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The map label for this gene is 123969124

Identifier: 123969124

GI number: 123969124

Start: 1355480

End: 1356514

Strand: Direct

Name: 123969124

Synonym: A9601_15921

Alternate gene names: NA

Gene position: 1355480-1356514 (Clockwise)

Preceding gene: 123969122

Following gene: 123969125

Centisome position: 81.17

GC content: 34.98

Gene sequence:

>1035_bases
TTGAGTAATATAAAATTTTCAGGTCTTAAAGGCCAAGCGCTTGTAATAGAGGATAAAGATATTCCAAGCATAAAAGAATT
TCAGGATGTTATCCCAGATCACTACTTTAAGTGCAATACCAAAACTTCTTTGAGGTATCTTTTACAATCAACTTTAATTC
AATTATTAATAGTTGCGATAGGGTTATCTATTCCATTTACCCCAAAAATGATCCCAATTTGGATTATTTACGCATTTCTA
TCAGGCACCACTGCAATGGGATTCTGGGTAATTGCCCATGAATGTGGGCATGGAGCATTCTCTAAAAACAAGACGCTGGA
GTCTATTACTGGTTATTTCCTACATTCATTACTTCTAGTGCCTTATTTTTCTTGGCAGCGTTCTCATGCTATTCATCATC
GATTCACAAATAACATAACCAATGGAGAAACTCACGTCCCATTGGTCATAAAAGGGAATGGAGTTACAGAAAAAGTTGGC
GGAGAAAAAGAATTACATTTTTCAAATTCCTTAGGTAAGAAAAAATATGGAATTCTTCAACTTGTCTTACATCTAATATT
TGGCTGGCCTGCTTATTTACTTACAGGAAGTACAGGAGGGCTTAAATATGGTACTTCAAATCATTTTTGGCCAATAAAAC
CATTTTCTAAAGCATTATGGCCATCAATATGGGCCAAGAAAGTTTGGATATCAGATATAGGTGTATGTTTAACATTAGTG
GGCATAGTTTATTCAGTTTTCAAGTATGGATTATTTCCAGTAATTGCTATGTATTTTGGCCCTTTATTAGTGGTTAATTG
TTGGCTAGTAGTTTATACATGGCTTCATCATACAGATTCAGATGTGCCTCATCTTTCAAATACGGAATTTTCCTTTATGA
AAGGCGCATTTCTGTCTATTGACAGGCCTTACGGTAGAGTCCTTAATTTTCTTCACCATAATATAGGTTCTAGCCATGTC
GTTCATCATGTATGTCCAACGATCCCTCATTATCATGCAAAAAAGGCAACTGTCTTTATTAAAAAAGCCTTTTAA

Upstream 100 bases:

>100_bases
GGAACAAAATTATAAATTCTTTTCATTATGAGATCCTTTGATGGATAATAGAATTTATAAATTCACTTTTATTTAACACT
ATTCTTAACCAAAAAAAAAT

Downstream 100 bases:

>100_bases
AAAGCATATCTTTTTAATCCTGACCCAATACACAAAGCTCTATGGAATATTGCTTGCAATTGCGTTGCTGTTAAGTCAGA
CATTAAGAGAGGAAGATATA

Product: fatty acid desaturase, type 2

Products: NA

Alternate protein names: Delta(12)-Fatty Acid Dehydrogenase; Omega-3 Fatty Acid Desaturase; Fatty Acid Desaturase Domain Protein; Omega-3 Acyl-Lipid Desaturase; Omega 3 Acyl-Lipid Desaturase; Phosphatidylcholine Desaturase

Number of amino acids: Translated: 344; Mature: 343

Protein sequence:

>344_residues
MSNIKFSGLKGQALVIEDKDIPSIKEFQDVIPDHYFKCNTKTSLRYLLQSTLIQLLIVAIGLSIPFTPKMIPIWIIYAFL
SGTTAMGFWVIAHECGHGAFSKNKTLESITGYFLHSLLLVPYFSWQRSHAIHHRFTNNITNGETHVPLVIKGNGVTEKVG
GEKELHFSNSLGKKKYGILQLVLHLIFGWPAYLLTGSTGGLKYGTSNHFWPIKPFSKALWPSIWAKKVWISDIGVCLTLV
GIVYSVFKYGLFPVIAMYFGPLLVVNCWLVVYTWLHHTDSDVPHLSNTEFSFMKGAFLSIDRPYGRVLNFLHHNIGSSHV
VHHVCPTIPHYHAKKATVFIKKAF

Sequences:

>Translated_344_residues
MSNIKFSGLKGQALVIEDKDIPSIKEFQDVIPDHYFKCNTKTSLRYLLQSTLIQLLIVAIGLSIPFTPKMIPIWIIYAFL
SGTTAMGFWVIAHECGHGAFSKNKTLESITGYFLHSLLLVPYFSWQRSHAIHHRFTNNITNGETHVPLVIKGNGVTEKVG
GEKELHFSNSLGKKKYGILQLVLHLIFGWPAYLLTGSTGGLKYGTSNHFWPIKPFSKALWPSIWAKKVWISDIGVCLTLV
GIVYSVFKYGLFPVIAMYFGPLLVVNCWLVVYTWLHHTDSDVPHLSNTEFSFMKGAFLSIDRPYGRVLNFLHHNIGSSHV
VHHVCPTIPHYHAKKATVFIKKAF
>Mature_343_residues
SNIKFSGLKGQALVIEDKDIPSIKEFQDVIPDHYFKCNTKTSLRYLLQSTLIQLLIVAIGLSIPFTPKMIPIWIIYAFLS
GTTAMGFWVIAHECGHGAFSKNKTLESITGYFLHSLLLVPYFSWQRSHAIHHRFTNNITNGETHVPLVIKGNGVTEKVGG
EKELHFSNSLGKKKYGILQLVLHLIFGWPAYLLTGSTGGLKYGTSNHFWPIKPFSKALWPSIWAKKVWISDIGVCLTLVG
IVYSVFKYGLFPVIAMYFGPLLVVNCWLVVYTWLHHTDSDVPHLSNTEFSFMKGAFLSIDRPYGRVLNFLHHNIGSSHVV
HHVCPTIPHYHAKKATVFIKKAF

Specific function: Unknown

COG id: COG3239

COG function: function code I; Fatty acid desaturase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Caenorhabditis elegans, GI17542730, Length=348, Percent_Identity=28.1609195402299, Blast_Score=132, Evalue=3e-31,
Organism=Caenorhabditis elegans, GI71999459, Length=342, Percent_Identity=30.4093567251462, Blast_Score=123, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 1.14.99.-

Molecular weight: Translated: 38854; Mature: 38723

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNIKFSGLKGQALVIEDKDIPSIKEFQDVIPDHYFKCNTKTSLRYLLQSTLIQLLIVAI
CCCCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHH
GLSIPFTPKMIPIWIIYAFLSGTTAMGFWVIAHECGHGAFSKNKTLESITGYFLHSLLLV
HCCCCCCCCHHHHHHHHHHHHCCHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH
PYFSWQRSHAIHHRFTNNITNGETHVPLVIKGNGVTEKVGGEKELHFSNSLGKKKYGILQ
HHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHCCCCCCEEECCCCCCHHHHHHH
LVLHLIFGWPAYLLTGSTGGLKYGTSNHFWPIKPFSKALWPSIWAKKVWISDIGVCLTLV
HHHHHHHCCHHHEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIVYSVFKYGLFPVIAMYFGPLLVVNCWLVVYTWLHHTDSDVPHLSNTEFSFMKGAFLSI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHCC
DRPYGRVLNFLHHNIGSSHVVHHVCPTIPHYHAKKATVFIKKAF
CCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCEEEEEEECC
>Mature Secondary Structure 
SNIKFSGLKGQALVIEDKDIPSIKEFQDVIPDHYFKCNTKTSLRYLLQSTLIQLLIVAI
CCCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHH
GLSIPFTPKMIPIWIIYAFLSGTTAMGFWVIAHECGHGAFSKNKTLESITGYFLHSLLLV
HCCCCCCCCHHHHHHHHHHHHCCHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH
PYFSWQRSHAIHHRFTNNITNGETHVPLVIKGNGVTEKVGGEKELHFSNSLGKKKYGILQ
HHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHCCCCCCEEECCCCCCHHHHHHH
LVLHLIFGWPAYLLTGSTGGLKYGTSNHFWPIKPFSKALWPSIWAKKVWISDIGVCLTLV
HHHHHHHCCHHHEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIVYSVFKYGLFPVIAMYFGPLLVVNCWLVVYTWLHHTDSDVPHLSNTEFSFMKGAFLSI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHCC
DRPYGRVLNFLHHNIGSSHVVHHVCPTIPHYHAKKATVFIKKAF
CCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA