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The map label for this gene is capD [H]

Identifier: 123968946

GI number: 123968946

Start: 1184809

End: 1186371

Strand: Reverse

Name: capD [H]

Synonym: A9601_14131

Alternate gene names: 123968946

Gene position: 1186371-1184809 (Counterclockwise)

Preceding gene: 123968947

Following gene: 123968945

Centisome position: 71.05

GC content: 28.79

Gene sequence:

>1563_bases
ATGCCAGCTTTAACAATATGGATATTGACTGCTGCATTAGTTTCAAGTTTTTCATTTATTGTTCGACTATTTTTAAAAGA
CGTAATATTTTTCCTTAAAAATAAACTTAATAATAAACAAAAAAATATTGTTATTTATGGAGCTGGTGATGCTGGGAATC
AACTTGCGAATGCATTGTGCTTGAGTCAAAAATATAAAATTATAAGTTTTATAGACGATTCTTCTAATCTTCAAGGTAGG
ACAATAGGAGGAATTCCAATAAAAAGTCCAAATTATTTAAATTTTCAAAATTCAAAAGTTGATAAAGTTCTTTTGGCAAT
ACCTTCTTTGACAAAAGAGAGAAAAAAAACTTTATTAGAAAATTTAGAAAAAAAATCTATAGGTGTATTACAAATCCCAT
CTATTGATGAATTAACTAGCGGCTCGGCACAAATTGACACATTGCGACCAGTTTCTCCTGAGGATTTATTAAGCAGAGAT
ATTGCAACTTATGAAGATAATAATCTAGAGGAATTAATAAAAAATAAAGTTGTTTGTATTTCGGGAGCAGGCGGATCTAT
TGGATCTGAATTATGTAGACAGATCATTAAACTTAAACCCAAAAAATTAATACTTATTGAAATGAATGAGCATAGTCTTT
ATAAAATTAACTATGAATTGACTCAAAAAGAAATTTACGAGATTGAAATTATTCCAATACTGGAAAATGCATCAAACTAT
AAATCTCTCAATCTCCTATTTAAACAAATTAAAATTAATATCTTATTTCACGCAGCTGCTTATAAACACGTACCCTTAGT
AGAAATGAATCCAATGTCAGGTCTGGCTAATAATTTTTTATCAACAAGTAATTTATGTAAATTAGCATTAGAAAATTCAA
TAGAGAGAATAATTTTAATTTCATCTGATAAAGCAGTAAGGCCTACTAACTTAATGGGCGTTTCAAAACGATTGTCAGAA
TTAATTTTTCAGGCATATTCCAAAATTGATAATAAAAAAGATGTTAATAAAAAGACTATTTTTGCGATGGTTAGGTTTGG
TAATGTACTTGGTTCTTCGGGATCAGTAGTGCCATTATTTAATAAACAAATTACTAAAGGAGGGCCTATAACTTTAACTC
ATCCAGATGTAATAAGATTTTTTATGACTATTTCAGAATCAGTACAATTAGTTCTACAAGCCGCCTTATTAGCTAATGGG
GGAGACTTATTCATACTTGATATGGGAAAACCTGTAAAAATATATGATCTTGCCATGAAAATGATTAATTTAAGAGGATT
AAAAATTAAAAATAAAGAGAATCCTGATGGTGATATTGAGATTATTTTTACAGGTCTAAGGCCAGGGGAAAAACTTTTTG
AGGAATTATTAATTGATGCCGATACTGAATCGACTATAAATCCATATATTCTTCGAGCACAAGAAAAATTTATTATGCCA
GAAAATCTTTTCCCTAGATTAGAAAAATTGGAATATCTTATTGACTCAAGGGATTCAAAAGAAGTTTGGAATCTCTTGAA
TGAAATTGTTCCTGAATGGATTAGAAGTAAAGAACTAAATTAA

Upstream 100 bases:

>100_bases
TACTCGTTATTCTTCTAGTGTCGACTTTTACGCAATCTTAGCCCGTAATATTATTCTTGTATTTATTCTTTTTTTAATTG
GAAAGATATTTAACTTGGCA

Downstream 100 bases:

>100_bases
ATAATGAAAAGTAATTTAAGAAAATTAATAAAAATTTTTATTAAAGAAAGTAAAAATCTTTTTATTTATGATAGCGGAAT
TAAAAATGTTTCTTTGGGTT

Product: nucleotide-diphosphate-sugar epimerase, membrane-associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 520; Mature: 519

Protein sequence:

>520_residues
MPALTIWILTAALVSSFSFIVRLFLKDVIFFLKNKLNNKQKNIVIYGAGDAGNQLANALCLSQKYKIISFIDDSSNLQGR
TIGGIPIKSPNYLNFQNSKVDKVLLAIPSLTKERKKTLLENLEKKSIGVLQIPSIDELTSGSAQIDTLRPVSPEDLLSRD
IATYEDNNLEELIKNKVVCISGAGGSIGSELCRQIIKLKPKKLILIEMNEHSLYKINYELTQKEIYEIEIIPILENASNY
KSLNLLFKQIKINILFHAAAYKHVPLVEMNPMSGLANNFLSTSNLCKLALENSIERIILISSDKAVRPTNLMGVSKRLSE
LIFQAYSKIDNKKDVNKKTIFAMVRFGNVLGSSGSVVPLFNKQITKGGPITLTHPDVIRFFMTISESVQLVLQAALLANG
GDLFILDMGKPVKIYDLAMKMINLRGLKIKNKENPDGDIEIIFTGLRPGEKLFEELLIDADTESTINPYILRAQEKFIMP
ENLFPRLEKLEYLIDSRDSKEVWNLLNEIVPEWIRSKELN

Sequences:

>Translated_520_residues
MPALTIWILTAALVSSFSFIVRLFLKDVIFFLKNKLNNKQKNIVIYGAGDAGNQLANALCLSQKYKIISFIDDSSNLQGR
TIGGIPIKSPNYLNFQNSKVDKVLLAIPSLTKERKKTLLENLEKKSIGVLQIPSIDELTSGSAQIDTLRPVSPEDLLSRD
IATYEDNNLEELIKNKVVCISGAGGSIGSELCRQIIKLKPKKLILIEMNEHSLYKINYELTQKEIYEIEIIPILENASNY
KSLNLLFKQIKINILFHAAAYKHVPLVEMNPMSGLANNFLSTSNLCKLALENSIERIILISSDKAVRPTNLMGVSKRLSE
LIFQAYSKIDNKKDVNKKTIFAMVRFGNVLGSSGSVVPLFNKQITKGGPITLTHPDVIRFFMTISESVQLVLQAALLANG
GDLFILDMGKPVKIYDLAMKMINLRGLKIKNKENPDGDIEIIFTGLRPGEKLFEELLIDADTESTINPYILRAQEKFIMP
ENLFPRLEKLEYLIDSRDSKEVWNLLNEIVPEWIRSKELN
>Mature_519_residues
PALTIWILTAALVSSFSFIVRLFLKDVIFFLKNKLNNKQKNIVIYGAGDAGNQLANALCLSQKYKIISFIDDSSNLQGRT
IGGIPIKSPNYLNFQNSKVDKVLLAIPSLTKERKKTLLENLEKKSIGVLQIPSIDELTSGSAQIDTLRPVSPEDLLSRDI
ATYEDNNLEELIKNKVVCISGAGGSIGSELCRQIIKLKPKKLILIEMNEHSLYKINYELTQKEIYEIEIIPILENASNYK
SLNLLFKQIKINILFHAAAYKHVPLVEMNPMSGLANNFLSTSNLCKLALENSIERIILISSDKAVRPTNLMGVSKRLSEL
IFQAYSKIDNKKDVNKKTIFAMVRFGNVLGSSGSVVPLFNKQITKGGPITLTHPDVIRFFMTISESVQLVLQAALLANGG
DLFILDMGKPVKIYDLAMKMINLRGLKIKNKENPDGDIEIIFTGLRPGEKLFEELLIDADTESTINPYILRAQEKFIMPE
NLFPRLEKLEYLIDSRDSKEVWNLLNEIVPEWIRSKELN

Specific function: Required for the biosynthesis of type 1 capsular polysaccharide [H]

COG id: COG1086

COG function: function code MG; Predicted nucleoside-diphosphate sugar epimerases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003869 [H]

Pfam domain/function: PF02719 Polysacc_synt_2 [H]

EC number: NA

Molecular weight: Translated: 58487; Mature: 58356

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPALTIWILTAALVSSFSFIVRLFLKDVIFFLKNKLNNKQKNIVIYGAGDAGNQLANALC
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHH
LSQKYKIISFIDDSSNLQGRTIGGIPIKSPNYLNFQNSKVDKVLLAIPSLTKERKKTLLE
HHCCCEEEEEECCCCCCCCCEECCEECCCCCEECCCCCCHHHHHHHCCCHHHHHHHHHHH
NLEKKSIGVLQIPSIDELTSGSAQIDTLRPVSPEDLLSRDIATYEDNNLEELIKNKVVCI
HHHHHCCCEEECCCCHHHCCCCCEECCCCCCCHHHHHHHCCCCCCCCCHHHHHCCCEEEE
SGAGGSIGSELCRQIIKLKPKKLILIEMNEHSLYKINYELTQKEIYEIEIIPILENASNY
ECCCCCHHHHHHHHHHHCCCCEEEEEEECCCEEEEEEEEECCCEEEEEEEEEEECCCCCC
KSLNLLFKQIKINILFHAAAYKHVPLVEMNPMSGLANNFLSTSNLCKLALENSIERIILI
HHHHHHHHHHEEEEEEEEHHHCCCCEEEECCCHHHHHHHCCHHHHHHHHHHCCCCEEEEE
SSDKAVRPTNLMGVSKRLSELIFQAYSKIDNKKDVNKKTIFAMVRFGNVLGSSGSVVPLF
ECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEC
NKQITKGGPITLTHPDVIRFFMTISESVQLVLQAALLANGGDLFILDMGKPVKIYDLAMK
CCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHH
MINLRGLKIKNKENPDGDIEIIFTGLRPGEKLFEELLIDADTESTINPYILRAQEKFIMP
HHHHCCEEECCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCEEEEECHHCCCC
ENLFPRLEKLEYLIDSRDSKEVWNLLNEIVPEWIRSKELN
CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PALTIWILTAALVSSFSFIVRLFLKDVIFFLKNKLNNKQKNIVIYGAGDAGNQLANALC
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHH
LSQKYKIISFIDDSSNLQGRTIGGIPIKSPNYLNFQNSKVDKVLLAIPSLTKERKKTLLE
HHCCCEEEEEECCCCCCCCCEECCEECCCCCEECCCCCCHHHHHHHCCCHHHHHHHHHHH
NLEKKSIGVLQIPSIDELTSGSAQIDTLRPVSPEDLLSRDIATYEDNNLEELIKNKVVCI
HHHHHCCCEEECCCCHHHCCCCCEECCCCCCCHHHHHHHCCCCCCCCCHHHHHCCCEEEE
SGAGGSIGSELCRQIIKLKPKKLILIEMNEHSLYKINYELTQKEIYEIEIIPILENASNY
ECCCCCHHHHHHHHHHHCCCCEEEEEEECCCEEEEEEEEECCCEEEEEEEEEEECCCCCC
KSLNLLFKQIKINILFHAAAYKHVPLVEMNPMSGLANNFLSTSNLCKLALENSIERIILI
HHHHHHHHHHEEEEEEEEHHHCCCCEEEECCCHHHHHHHCCHHHHHHHHHHCCCCEEEEE
SSDKAVRPTNLMGVSKRLSELIFQAYSKIDNKKDVNKKTIFAMVRFGNVLGSSGSVVPLF
ECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEC
NKQITKGGPITLTHPDVIRFFMTISESVQLVLQAALLANGGDLFILDMGKPVKIYDLAMK
CCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHH
MINLRGLKIKNKENPDGDIEIIFTGLRPGEKLFEELLIDADTESTINPYILRAQEKFIMP
HHHHCCEEECCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCEEEEECHHCCCC
ENLFPRLEKLEYLIDSRDSKEVWNLLNEIVPEWIRSKELN
CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7961465 [H]