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The map label for this gene is degT [H]

Identifier: 123968944

GI number: 123968944

Start: 1183160

End: 1184266

Strand: Reverse

Name: degT [H]

Synonym: A9601_14111

Alternate gene names: 123968944

Gene position: 1184266-1183160 (Counterclockwise)

Preceding gene: 123968945

Following gene: 123968943

Centisome position: 70.92

GC content: 30.62

Gene sequence:

>1107_bases
ATGAAAAATATTCCAATATTAGACTTAAATCTTCAGCATTTAAATTTACAGGATGAGATTTTTGATGCATTTAAGAAAGT
TATTAATAAATCCTCCTTTATAAGAGGGGAGTATGTAGATTCTTTTGAAAATGAGTTTGCTAAATTGACGGGAAGGAAAC
ACTGCATATCCTGTGCAAATGGAACAGATGCACTATACATAGCTATGCATGCTATGAATTTGAAAAATAAAGAGGAAGTT
ATTGTTCCTGCACATTCTTGGATATCAACTTCTGAGACCGTAACGCAAGCTGGAGGAAAGGTAGTTTTTTGTGATACTAA
TGTTGATGATTTTACTATAAATACTGATCTTATTGAATCAAAAATAACTGAAAAAACAGTTGGAATAATACCAGTCCACT
TGTATGGTCAGCCAGCTAATATGTCAAAAATAAAGCAGATTGCTAAAAAGTATTCTCTTTGGATTATTGAGGATTGTGCA
CAAGCCCATTTTGCTGAATTTAAAAATTTGCAGGTTGGCTCATTTGGAGAAGCATCGACTTTTTCTTTTTATCCTGGGAA
AAATCTTGGAGCTTTGGGTGATGCTGGAGCTATAGTTACAGATAATGATGAAGTCGCTTATAAATTAAAAACTTTTGCTA
GACATGGCGGATTATTGAAGGGTGATCATCAAATTGAAGGGATTAATAGTCGTATGGATGGATTACAGGCAGCCTTCCTC
TTAATCAAGATGAAGTATATAAACAAATGGACAGATCAAAGAATTGATAAAGCTAATAATTACTTTAAATTGTTAAATGA
TATTCCAAATTTAACTTTGCCGGTAGTTAATAAGGGTAATAAACATGTTTGGCATTTATTTGTTATCAAACATGCAAAAA
GAGATGAATTATCAATTTATTTAAAAGGTAAAGGAATATCCACATCAATTAATTATCCTATTGCATTACCTTTTTTACCT
GCATATAAATATCTAAATCATTCTAAAAATGATTTTCCAGCAGCATATGAAAATCAAAGTAAAATTTTATCAATTCCTCT
TTACCCAGAACTAACTTTAGATCAACAATCTTTTATATCTAAAAACATAATAGATTTCTGTATTTAG

Upstream 100 bases:

>100_bases
TTGTAACCAGGGATATTCTGAAATCGGGGATATATGTGGGAAACCCAGCAATTTTTCTTAGAAATATTGATTATAAATAA
ATTTAAAATATATTAAATAA

Downstream 100 bases:

>100_bases
TTTATAGTAAAGTTAAAAATTAAAATCTAAAATAATATTTATGTATGCGAAATTCAAACCTATCACTAATAGAAAAATTA
AAGTTGGAATAGTTGGTTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 368

Protein sequence:

>368_residues
MKNIPILDLNLQHLNLQDEIFDAFKKVINKSSFIRGEYVDSFENEFAKLTGRKHCISCANGTDALYIAMHAMNLKNKEEV
IVPAHSWISTSETVTQAGGKVVFCDTNVDDFTINTDLIESKITEKTVGIIPVHLYGQPANMSKIKQIAKKYSLWIIEDCA
QAHFAEFKNLQVGSFGEASTFSFYPGKNLGALGDAGAIVTDNDEVAYKLKTFARHGGLLKGDHQIEGINSRMDGLQAAFL
LIKMKYINKWTDQRIDKANNYFKLLNDIPNLTLPVVNKGNKHVWHLFVIKHAKRDELSIYLKGKGISTSINYPIALPFLP
AYKYLNHSKNDFPAAYENQSKILSIPLYPELTLDQQSFISKNIIDFCI

Sequences:

>Translated_368_residues
MKNIPILDLNLQHLNLQDEIFDAFKKVINKSSFIRGEYVDSFENEFAKLTGRKHCISCANGTDALYIAMHAMNLKNKEEV
IVPAHSWISTSETVTQAGGKVVFCDTNVDDFTINTDLIESKITEKTVGIIPVHLYGQPANMSKIKQIAKKYSLWIIEDCA
QAHFAEFKNLQVGSFGEASTFSFYPGKNLGALGDAGAIVTDNDEVAYKLKTFARHGGLLKGDHQIEGINSRMDGLQAAFL
LIKMKYINKWTDQRIDKANNYFKLLNDIPNLTLPVVNKGNKHVWHLFVIKHAKRDELSIYLKGKGISTSINYPIALPFLP
AYKYLNHSKNDFPAAYENQSKILSIPLYPELTLDQQSFISKNIIDFCI
>Mature_368_residues
MKNIPILDLNLQHLNLQDEIFDAFKKVINKSSFIRGEYVDSFENEFAKLTGRKHCISCANGTDALYIAMHAMNLKNKEEV
IVPAHSWISTSETVTQAGGKVVFCDTNVDDFTINTDLIESKITEKTVGIIPVHLYGQPANMSKIKQIAKKYSLWIIEDCA
QAHFAEFKNLQVGSFGEASTFSFYPGKNLGALGDAGAIVTDNDEVAYKLKTFARHGGLLKGDHQIEGINSRMDGLQAAFL
LIKMKYINKWTDQRIDKANNYFKLLNDIPNLTLPVVNKGNKHVWHLFVIKHAKRDELSIYLKGKGISTSINYPIALPFLP
AYKYLNHSKNDFPAAYENQSKILSIPLYPELTLDQQSFISKNIIDFCI

Specific function: This membrane protein may function as a sensor protein and may transfer the signal of environmental stimuli to the regulatory region of target genes to activate or repress transcription of the genes [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=355, Percent_Identity=29.0140845070423, Blast_Score=153, Evalue=2e-38,
Organism=Escherichia coli, GI2367285, Length=326, Percent_Identity=27.9141104294479, Blast_Score=125, Evalue=3e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 41457; Mature: 41457

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNIPILDLNLQHLNLQDEIFDAFKKVINKSSFIRGEYVDSFENEFAKLTGRKHCISCAN
CCCCCEEEECHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECC
GTDALYIAMHAMNLKNKEEVIVPAHSWISTSETVTQAGGKVVFCDTNVDDFTINTDLIES
CCCEEEEEEEECCCCCCCEEEEECCCCCCCCHHHHHCCCEEEEEECCCCCEEECHHHHHH
KITEKTVGIIPVHLYGQPANMSKIKQIAKKYSLWIIEDCAQAHFAEFKNLQVGSFGEAST
HHHHHHCCEEEEEEECCCCCHHHHHHHHHHHCEEEEHHHHHHHHHHHCCCCCCCCCCCCE
FSFYPGKNLGALGDAGAIVTDNDEVAYKLKTFARHGGLLKGDHQIEGINSRMDGLQAAFL
EEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHHH
LIKMKYINKWTDQRIDKANNYFKLLNDIPNLTLPVVNKGNKHVWHLFVIKHAKRDELSIY
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEEEEEECCCCCEEEE
LKGKGISTSINYPIALPFLPAYKYLNHSKNDFPAAYENQSKILSIPLYPELTLDQQSFIS
EECCCCCEECCCCEEECCHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHH
KNIIDFCI
HHHHHHCC
>Mature Secondary Structure
MKNIPILDLNLQHLNLQDEIFDAFKKVINKSSFIRGEYVDSFENEFAKLTGRKHCISCAN
CCCCCEEEECHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECC
GTDALYIAMHAMNLKNKEEVIVPAHSWISTSETVTQAGGKVVFCDTNVDDFTINTDLIES
CCCEEEEEEEECCCCCCCEEEEECCCCCCCCHHHHHCCCEEEEEECCCCCEEECHHHHHH
KITEKTVGIIPVHLYGQPANMSKIKQIAKKYSLWIIEDCAQAHFAEFKNLQVGSFGEAST
HHHHHHCCEEEEEEECCCCCHHHHHHHHHHHCEEEEHHHHHHHHHHHCCCCCCCCCCCCE
FSFYPGKNLGALGDAGAIVTDNDEVAYKLKTFARHGGLLKGDHQIEGINSRMDGLQAAFL
EEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHHH
LIKMKYINKWTDQRIDKANNYFKLLNDIPNLTLPVVNKGNKHVWHLFVIKHAKRDELSIY
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEEEEEECCCCCEEEE
LKGKGISTSINYPIALPFLPAYKYLNHSKNDFPAAYENQSKILSIPLYPELTLDQQSFIS
EECCCCCEECCCCEEECCHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHH
KNIIDFCI
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2104607 [H]