Click here to switch to the map view.

The map label for this gene is fdx4 [H]

Identifier: 123968851

GI number: 123968851

Start: 1097093

End: 1097434

Strand: Direct

Name: fdx4 [H]

Synonym: A9601_13181

Alternate gene names: 123968851

Gene position: 1097093-1097434 (Clockwise)

Preceding gene: 123968850

Following gene: 123968856

Centisome position: 65.7

GC content: 30.99

Gene sequence:

>342_bases
GTGAATATTAAAAAGCATCTTCTACTGTGCGCAACACCTACAAAACAGAAATGCTTTAAAGGCAATGAAGGACAAAAAAC
ATGGGAATGTCTGAAAAAGACTTTAAAAAAATTTGAGAATGATCCCTCTACAAAAAACGTACATATATTAAGATCAAAAG
CTGACTGTTTAAGGGTATGTAAGAACGGCCCAATTCTTCTTATTTGGCCAGATGGTATTTGGTATGAGAAAGTTTCTCCA
GAAAAAATTTCTGAAATTTTTACCTCACATATTATTAACGGTAAGCCAATAGAAAAATGGATTTTCAAAAAAACACCATT
TTTAGATAGTTTTAGATACTAA

Upstream 100 bases:

>100_bases
GTCCAGAATTAGAAGATATTCTTGAAGTAGACAATTGGGCCAGGCTTTTTGTTAAGCAAGAAATTAAAAAAGGGAAAAAA
TACGTAAATATTGGCTAAAA

Downstream 100 bases:

>100_bases
TAAACCAGTTCTTTACGACTTCGTCTGACCAGCAGCCATTAATCGAATGAAAACCATTATGACCTCCTTTTTCAGTTATA
AAAATAGTAAATTTATCAAT

Product: ferredoxin

Products: NA

Alternate protein names: AaFd4 [H]

Number of amino acids: Translated: 113; Mature: 113

Protein sequence:

>113_residues
MNIKKHLLLCATPTKQKCFKGNEGQKTWECLKKTLKKFENDPSTKNVHILRSKADCLRVCKNGPILLIWPDGIWYEKVSP
EKISEIFTSHIINGKPIEKWIFKKTPFLDSFRY

Sequences:

>Translated_113_residues
MNIKKHLLLCATPTKQKCFKGNEGQKTWECLKKTLKKFENDPSTKNVHILRSKADCLRVCKNGPILLIWPDGIWYEKVSP
EKISEIFTSHIINGKPIEKWIFKKTPFLDSFRY
>Mature_113_residues
MNIKKHLLLCATPTKQKCFKGNEGQKTWECLKKTLKKFENDPSTKNVHILRSKADCLRVCKNGPILLIWPDGIWYEKVSP
EKISEIFTSHIINGKPIEKWIFKKTPFLDSFRY

Specific function: Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions [H]

COG id: COG3411

COG function: function code C; Ferredoxin

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 2Fe2S Shethna-type ferredoxin family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002023
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF01257 Complex1_24kDa [H]

EC number: NA

Molecular weight: Translated: 13251; Mature: 13251

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
4.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIKKHLLLCATPTKQKCFKGNEGQKTWECLKKTLKKFENDPSTKNVHILRSKADCLRVC
CCCCCCEEEEECCCHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHH
KNGPILLIWPDGIWYEKVSPEKISEIFTSHIINGKPIEKWIFKKTPFLDSFRY
CCCCEEEECCCCCEECCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MNIKKHLLLCATPTKQKCFKGNEGQKTWECLKKTLKKFENDPSTKNVHILRSKADCLRVC
CCCCCCEEEEECCCHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHH
KNGPILLIWPDGIWYEKVSPEKISEIFTSHIINGKPIEKWIFKKTPFLDSFRY
CCCCEEEECCCCCEECCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320; 10441520; 10884354; 12089152 [H]