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The map label for this gene is secD [H]

Identifier: 123968464

GI number: 123968464

Start: 800688

End: 802157

Strand: Direct

Name: secD [H]

Synonym: A9601_09311

Alternate gene names: 123968464

Gene position: 800688-802157 (Clockwise)

Preceding gene: 123968463

Following gene: 123968465

Centisome position: 47.95

GC content: 29.66

Gene sequence:

>1470_bases
ATGAAAAGAAGGCAAGGTTGGCTTTTTTTTATTATATTTCTACTTACTTTATCTGTTTATCTATTAATAAATTATCCATT
ACAGTTGGGATTGGATTTACAAGGGGGGTCTCAACTTACACTTCAAATTATTAAAGAGGAAGGTAAGGTAACAAGGGATG
AACTTGAAGCAGTTAATTCGGTTATAGATAAGCGCGTTAACAATTTAGGAGTTTCTGAGTCTAATTTACAAACCCTCGGT
GGAGATCAATTGATTTTAGAATTACCAGGTGAACAAAATCCATTAGTTGCTTCAAGGGTATTAGGTAAGACTGCTTTATT
AGAATTTAGAACCCAAAAAGAAGGAACATCTACAGATTTAAAAACCCTGCAACTTCAAAGATTGAGTATTAAAGAATTAA
TTGAACAATATTCCTTTGAAGAAAAAAATCAAAATAATGTTAATTTCTTAAAAGTTATTCAAGATGATCTTAAAGATATA
GAGCAAGAATTGAATTACTCATCTACTAGTAATGATTTATATGGGAAGTTAATTGAAATCAAAAAATATATTGATAAAGA
AATTACAAATTTATTTATTAAAACAGATTTATCTGGTAAGGATCTTATTAACGCAGGAAGGAGACAAGAACAAACAAATA
GTAATTGGGAAGTTTTATTAACTTTTAGTAATTCTGGAGGTGAAAAGTTTGCAGAAATTACAAAGTCAATTGCTGGCACT
AATCAACTATTGGCTATTATTCTTGATGGCGAATCTATAAGTGAAGCTAGTGTTGGTAACCAGTTTTCTAGTACTGGTAT
TACAGGTGGATCAGCAACAATAAGCGGTAATTTTAGTGCTGAAAATGCTAAAGAATTAGAAGTTCAACTTAAAGGAGGCT
CATTGCCATTGCCAATTGAAATAGTAGAAACTAACACTATAGGGGCTCTATTGGGATCCAAAAATATTTTAAAAAGTCTT
TATGCAGCTATTAGTGGTTTAATTTTTGTTGGTATATTTATGATTCTTAATTATAGAATTCTAGGTTTCGTTTCAGTTTT
ATCTCTAGTACTTTATGGTTTCTTTAACTTAGCCCTATATTCTTTAATTCCTGTAACTTTGACTTTACCTGGAATATCTG
GGCTTATACTTAGCATTGGTATGGCTGTTGATGCAAATATTCTAATATTTGAGAGAATTAGAGAAGAATTATATGAAGGA
AATACTCTTACAAGATCTATTGATAGCGGTTTTCAAAGAGCTAATTCATCTATAGTTGATGGTCATATTACAACTCTTCT
AAGTTGTTTTGTATTGTTTTTATTAGGAACAAATTTTGTTAAAGGTTTTGCGGCAACATTAGGTATTGGAGTTCTAATAA
GCTTGTTTACCTCATTAAATTGTTCTAAAACTATTTTGCGATTTTTTACAACATATCAATCTTTAAGAGAAAAAAATCTC
TATCTACCCAAGAATAATTTTTCAAATTAA

Upstream 100 bases:

>100_bases
TCCAACTCCCTATAATGGAAATCTTGAGAATTTGACAATAATCCAACCACATCAAATTGTTGAAAAAGTTGAACATTTAA
TTAGTGGGAGTATATAGAAA

Downstream 100 bases:

>100_bases
ATTTTTTGTTTCTAAATTCCATGAAATACAATCTTGAACTAATAAAAAATAAAAGAAAAATAATTAGTTTTTCAACTCTT
CTTATTTTGTTAAGTCTTTT

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 489; Mature: 489

Protein sequence:

>489_residues
MKRRQGWLFFIIFLLTLSVYLLINYPLQLGLDLQGGSQLTLQIIKEEGKVTRDELEAVNSVIDKRVNNLGVSESNLQTLG
GDQLILELPGEQNPLVASRVLGKTALLEFRTQKEGTSTDLKTLQLQRLSIKELIEQYSFEEKNQNNVNFLKVIQDDLKDI
EQELNYSSTSNDLYGKLIEIKKYIDKEITNLFIKTDLSGKDLINAGRRQEQTNSNWEVLLTFSNSGGEKFAEITKSIAGT
NQLLAIILDGESISEASVGNQFSSTGITGGSATISGNFSAENAKELEVQLKGGSLPLPIEIVETNTIGALLGSKNILKSL
YAAISGLIFVGIFMILNYRILGFVSVLSLVLYGFFNLALYSLIPVTLTLPGISGLILSIGMAVDANILIFERIREELYEG
NTLTRSIDSGFQRANSSIVDGHITTLLSCFVLFLLGTNFVKGFAATLGIGVLISLFTSLNCSKTILRFFTTYQSLREKNL
YLPKNNFSN

Sequences:

>Translated_489_residues
MKRRQGWLFFIIFLLTLSVYLLINYPLQLGLDLQGGSQLTLQIIKEEGKVTRDELEAVNSVIDKRVNNLGVSESNLQTLG
GDQLILELPGEQNPLVASRVLGKTALLEFRTQKEGTSTDLKTLQLQRLSIKELIEQYSFEEKNQNNVNFLKVIQDDLKDI
EQELNYSSTSNDLYGKLIEIKKYIDKEITNLFIKTDLSGKDLINAGRRQEQTNSNWEVLLTFSNSGGEKFAEITKSIAGT
NQLLAIILDGESISEASVGNQFSSTGITGGSATISGNFSAENAKELEVQLKGGSLPLPIEIVETNTIGALLGSKNILKSL
YAAISGLIFVGIFMILNYRILGFVSVLSLVLYGFFNLALYSLIPVTLTLPGISGLILSIGMAVDANILIFERIREELYEG
NTLTRSIDSGFQRANSSIVDGHITTLLSCFVLFLLGTNFVKGFAATLGIGVLISLFTSLNCSKTILRFFTTYQSLREKNL
YLPKNNFSN
>Mature_489_residues
MKRRQGWLFFIIFLLTLSVYLLINYPLQLGLDLQGGSQLTLQIIKEEGKVTRDELEAVNSVIDKRVNNLGVSESNLQTLG
GDQLILELPGEQNPLVASRVLGKTALLEFRTQKEGTSTDLKTLQLQRLSIKELIEQYSFEEKNQNNVNFLKVIQDDLKDI
EQELNYSSTSNDLYGKLIEIKKYIDKEITNLFIKTDLSGKDLINAGRRQEQTNSNWEVLLTFSNSGGEKFAEITKSIAGT
NQLLAIILDGESISEASVGNQFSSTGITGGSATISGNFSAENAKELEVQLKGGSLPLPIEIVETNTIGALLGSKNILKSL
YAAISGLIFVGIFMILNYRILGFVSVLSLVLYGFFNLALYSLIPVTLTLPGISGLILSIGMAVDANILIFERIREELYEG
NTLTRSIDSGFQRANSSIVDGHITTLLSCFVLFLLGTNFVKGFAATLGIGVLISLFTSLNCSKTILRFFTTYQSLREKNL
YLPKNNFSN

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=471, Percent_Identity=31.2101910828025, Blast_Score=190, Evalue=2e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 53953; Mature: 53953

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRRQGWLFFIIFLLTLSVYLLINYPLQLGLDLQGGSQLTLQIIKEEGKVTRDELEAVNS
CCCCCHHHHHHHHHHHHHHHHHHCCCHHCCEEECCCCCEEHHEEHHCCCCCHHHHHHHHH
VIDKRVNNLGVSESNLQTLGGDQLILELPGEQNPLVASRVLGKTALLEFRTQKEGTSTDL
HHHHHHHHCCCCCCCHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHH
KTLQLQRLSIKELIEQYSFEEKNQNNVNFLKVIQDDLKDIEQELNYSSTSNDLYGKLIEI
HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
KKYIDKEITNLFIKTDLSGKDLINAGRRQEQTNSNWEVLLTFSNSGGEKFAEITKSIAGT
HHHHHHHHHHEEEEECCCCHHHHHCCCCHHCCCCCCEEEEEEECCCCHHHHHHHHHHCCC
NQLLAIILDGESISEASVGNQFSSTGITGGSATISGNFSAENAKELEVQLKGGSLPLPIE
CEEEEEEECCCCCCHHHCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCEE
IVETNTIGALLGSKNILKSLYAAISGLIFVGIFMILNYRILGFVSVLSLVLYGFFNLALY
EEECCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLIPVTLTLPGISGLILSIGMAVDANILIFERIREELYEGNTLTRSIDSGFQRANSSIVD
HHHHHHEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC
GHITTLLSCFVLFLLGTNFVKGFAATLGIGVLISLFTSLNCSKTILRFFTTYQSLREKNL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
YLPKNNFSN
CCCCCCCCC
>Mature Secondary Structure
MKRRQGWLFFIIFLLTLSVYLLINYPLQLGLDLQGGSQLTLQIIKEEGKVTRDELEAVNS
CCCCCHHHHHHHHHHHHHHHHHHCCCHHCCEEECCCCCEEHHEEHHCCCCCHHHHHHHHH
VIDKRVNNLGVSESNLQTLGGDQLILELPGEQNPLVASRVLGKTALLEFRTQKEGTSTDL
HHHHHHHHCCCCCCCHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHH
KTLQLQRLSIKELIEQYSFEEKNQNNVNFLKVIQDDLKDIEQELNYSSTSNDLYGKLIEI
HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
KKYIDKEITNLFIKTDLSGKDLINAGRRQEQTNSNWEVLLTFSNSGGEKFAEITKSIAGT
HHHHHHHHHHEEEEECCCCHHHHHCCCCHHCCCCCCEEEEEEECCCCHHHHHHHHHHCCC
NQLLAIILDGESISEASVGNQFSSTGITGGSATISGNFSAENAKELEVQLKGGSLPLPIE
CEEEEEEECCCCCCHHHCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCEE
IVETNTIGALLGSKNILKSLYAAISGLIFVGIFMILNYRILGFVSVLSLVLYGFFNLALY
EEECCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLIPVTLTLPGISGLILSIGMAVDANILIFERIREELYEGNTLTRSIDSGFQRANSSIVD
HHHHHHEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC
GHITTLLSCFVLFLLGTNFVKGFAATLGIGVLISLFTSLNCSKTILRFFTTYQSLREKNL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
YLPKNNFSN
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]