| Definition | Prochlorococcus marinus str. AS9601, complete genome. |
|---|---|
| Accession | NC_008816 |
| Length | 1,669,886 |
Click here to switch to the map view.
The map label for this gene is 123968271
Identifier: 123968271
GI number: 123968271
Start: 655068
End: 656258
Strand: Direct
Name: 123968271
Synonym: A9601_07361
Alternate gene names: NA
Gene position: 655068-656258 (Clockwise)
Preceding gene: 123968269
Following gene: 123968273
Centisome position: 39.23
GC content: 30.98
Gene sequence:
>1191_bases ATGAATAGCTTACCCGCGAATAATCCAGATTGGTTAGTAAAAAAAATAATAAAAATGGGTGGGACTATAAGTTTTTATGA CTTTATGAATTTTGCATTAAATGATCCTATTAATGGTTATTACGGCAGCGGAAAAGCTGAGTTAGGCGTTCGAGGAGATT TTGTCACATCACCATCTTTATCTGATGACTTTGCTTTTTTAGTTGGTAAACAAATAGAAGATTGGTTGATTCAGTTCAAA AGTAGTTTTTTATCTAATGAGACATTATCTGTAACTGAATTTGGAGCTGGAGATGGAAGCTTTATGAGTGGATTAATTAA ATACTTTTTAGAAAACAGCAAGAATTTTTTAGAAGGTATTTCTTTTGTAATTATTGAACCTAATGAAGGGATGGTAGAAA AACAAAAAAATAAATTGGAGGAATTTTTGAACTTAGGTATTGATATTTTATGGAAAGGTTTGGATGAAGTAGAGGAAAAT AATATAAATGGAATAGTTCTAGCAAATGAAGTTTTGGATGCTTTGCCAGTAGAAAGAATAACCTTCTCAAAGGGAAAACT AATTCGACAAGCAGTTTCTATAGACAAAAAATCTCATAAATTATTTTTTGATAAAATGCCAATTACACGTGAATTGGAAA AAAGTTTTGAACTTGCTAAAAGTGAGTTGGGAATAACTATTCCGCCTGAAGATGCTCTTGAAGGATGGACGACAGAATGG CATGTAGATAACTCAAAATGGTTAGAAGCTATTTATGGGAAAATCAATAATGGTATTTTATTGATAATTGATTACGCTAA AGAAGCTAAAAAATACTATAACTCTAAGAATTCTGATGGGACTATAGTTTCATATGAAAATCAAAAAATGAGGAATAATG TCCTAGATTCTCCTGGAAATTGCGATTTAACATCTCATGTATGCATAGAAACTTTAATTAATGATGCTGAGACTCTTGGA TTTGATACTGTTGGAATAACAAAACAAGGAGAGGCTTTATTGGCGCTTGGATTGGCTGAGAGACTTTATGGGATTCAGAA AGAATTTAAGGAGAATTTATCAAATGCTCTTTTAAGAAGAGAGGCATTACTTAGACTAGTAGATCCTGTTTGTTTAGGTG ATTTTAAGTGGTTTGTTTTTAAAAAGTTTAATGAGAAGAAAATAAATATAAATTCAACCTGTTTGCGTTAA
Upstream 100 bases:
>100_bases GGGTTTATGTGAAATTAAAACTAATATAGATAGAAATATTCCTAATAAATAGTTAATCTTTGAAGGCATAAATAAGTTTT GTCTCTTTATATTTTCGCCG
Downstream 100 bases:
>100_bases GAAAAAAACTTTAAAAATAATGAATCTTCCACGTCATCATATATATCAACAGCACCAATTTCTTTCGGTAATATAAATCT CATTTTGCCATCACGAACTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 396; Mature: 396
Protein sequence:
>396_residues MNSLPANNPDWLVKKIIKMGGTISFYDFMNFALNDPINGYYGSGKAELGVRGDFVTSPSLSDDFAFLVGKQIEDWLIQFK SSFLSNETLSVTEFGAGDGSFMSGLIKYFLENSKNFLEGISFVIIEPNEGMVEKQKNKLEEFLNLGIDILWKGLDEVEEN NINGIVLANEVLDALPVERITFSKGKLIRQAVSIDKKSHKLFFDKMPITRELEKSFELAKSELGITIPPEDALEGWTTEW HVDNSKWLEAIYGKINNGILLIIDYAKEAKKYYNSKNSDGTIVSYENQKMRNNVLDSPGNCDLTSHVCIETLINDAETLG FDTVGITKQGEALLALGLAERLYGIQKEFKENLSNALLRREALLRLVDPVCLGDFKWFVFKKFNEKKININSTCLR
Sequences:
>Translated_396_residues MNSLPANNPDWLVKKIIKMGGTISFYDFMNFALNDPINGYYGSGKAELGVRGDFVTSPSLSDDFAFLVGKQIEDWLIQFK SSFLSNETLSVTEFGAGDGSFMSGLIKYFLENSKNFLEGISFVIIEPNEGMVEKQKNKLEEFLNLGIDILWKGLDEVEEN NINGIVLANEVLDALPVERITFSKGKLIRQAVSIDKKSHKLFFDKMPITRELEKSFELAKSELGITIPPEDALEGWTTEW HVDNSKWLEAIYGKINNGILLIIDYAKEAKKYYNSKNSDGTIVSYENQKMRNNVLDSPGNCDLTSHVCIETLINDAETLG FDTVGITKQGEALLALGLAERLYGIQKEFKENLSNALLRREALLRLVDPVCLGDFKWFVFKKFNEKKININSTCLR >Mature_396_residues MNSLPANNPDWLVKKIIKMGGTISFYDFMNFALNDPINGYYGSGKAELGVRGDFVTSPSLSDDFAFLVGKQIEDWLIQFK SSFLSNETLSVTEFGAGDGSFMSGLIKYFLENSKNFLEGISFVIIEPNEGMVEKQKNKLEEFLNLGIDILWKGLDEVEEN NINGIVLANEVLDALPVERITFSKGKLIRQAVSIDKKSHKLFFDKMPITRELEKSFELAKSELGITIPPEDALEGWTTEW HVDNSKWLEAIYGKINNGILLIIDYAKEAKKYYNSKNSDGTIVSYENQKMRNNVLDSPGNCDLTSHVCIETLINDAETLG FDTVGITKQGEALLALGLAERLYGIQKEFKENLSNALLRREALLRLVDPVCLGDFKWFVFKKFNEKKININSTCLR
Specific function: Unknown
COG id: COG1565
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Caenorhabditis elegans, GI193211224, Length=357, Percent_Identity=23.5294117647059, Blast_Score=71, Evalue=8e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44656; Mature: 44656
Theoretical pI: Translated: 4.75; Mature: 4.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSLPANNPDWLVKKIIKMGGTISFYDFMNFALNDPINGYYGSGKAELGVRGDFVTSPSL CCCCCCCCHHHHHHHHHHHCCCEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCC SDDFAFLVGKQIEDWLIQFKSSFLSNETLSVTEFGAGDGSFMSGLIKYFLENSKNFLEGI CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCHHHHCCC SFVIIEPNEGMVEKQKNKLEEFLNLGIDILWKGLDEVEENNINGIVLANEVLDALPVERI EEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHCHHHHHHCCCCEEEEHHHHHHHCCCHHE TFSKGKLIRQAVSIDKKSHKLFFDKMPITRELEKSFELAKSELGITIPPEDALEGWTTEW ECCHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCHHHHCCCCEEE HVDNSKWLEAIYGKINNGILLIIDYAKEAKKYYNSKNSDGTIVSYENQKMRNNVLDSPGN ECCCHHHHHHHHHHCCCCEEEEEECHHHHHHHHCCCCCCCCEEEECCHHHHHHCCCCCCC CDLTSHVCIETLINDAETLGFDTVGITKQGEALLALGLAERLYGIQKEFKENLSNALLRR CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EALLRLVDPVCLGDFKWFVFKKFNEKKININSTCLR HHHHHHHCHHHHCCCCEEEEEECCCCEECCCHHCCC >Mature Secondary Structure MNSLPANNPDWLVKKIIKMGGTISFYDFMNFALNDPINGYYGSGKAELGVRGDFVTSPSL CCCCCCCCHHHHHHHHHHHCCCEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCC SDDFAFLVGKQIEDWLIQFKSSFLSNETLSVTEFGAGDGSFMSGLIKYFLENSKNFLEGI CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCHHHHCCC SFVIIEPNEGMVEKQKNKLEEFLNLGIDILWKGLDEVEENNINGIVLANEVLDALPVERI EEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHCHHHHHHCCCCEEEEHHHHHHHCCCHHE TFSKGKLIRQAVSIDKKSHKLFFDKMPITRELEKSFELAKSELGITIPPEDALEGWTTEW ECCHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCHHHHCCCCEEE HVDNSKWLEAIYGKINNGILLIIDYAKEAKKYYNSKNSDGTIVSYENQKMRNNVLDSPGN ECCCHHHHHHHHHHCCCCEEEEEECHHHHHHHHCCCCCCCCEEEECCHHHHHHCCCCCCC CDLTSHVCIETLINDAETLGFDTVGITKQGEALLALGLAERLYGIQKEFKENLSNALLRR CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EALLRLVDPVCLGDFKWFVFKKFNEKKININSTCLR HHHHHHHCHHHHCCCCEEEEEECCCCEECCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA