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The map label for this gene is dnaQ

Identifier: 123968212

GI number: 123968212

Start: 602456

End: 603235

Strand: Direct

Name: dnaQ

Synonym: A9601_06771

Alternate gene names: NA

Gene position: 602456-603235 (Clockwise)

Preceding gene: 123968210

Following gene: 123968214

Centisome position: 36.08

GC content: 30.13

Gene sequence:

>780_bases
TTGGAACTATTTAACAAAAAAGAATTAAATCAATTGGATTTTCTTCATGATCAAATTAACACCAATCCCTCTGAAGAGAG
AGTAACGAATAAAAATAAAAAAATTGAAAAAATTTTAATTCTTGATACTGAAACAACAGGTTTAGACGAAAATAAAGATG
AAGTGATAGAAATAGGTTGCATCTTATTTGATGTGTCTTTTAAATGTGTACTTTCACAAGTTTCTTTTTTATTTCCAGTT
AATAATAATGAAGCCGAACATGTAAATGGTATATCTGCAGAAGTAACTAATATCTCTCAACCATGGGAAGATGGATTGAA
TTTCTTTCTAAAACTTGTTGATTCTTCAGATTTTATAGTTGCTCATAATGTGGAGTTTGATAAGAAATGGTTTGGAAAAG
GAAGATTACCTAAGCTTAATAAGAAATGGATATGTAGTTTAGAGGATATTAATTGGTCTTTTCAAAAATCACTAAAAACA
AGACCTTCAGTAACTGATCTAGCCTTATCTTTTTCAATACCAGTTTGGAATTTACATAGAGCTTTATCTGATTGCTTTTA
CTTATCTGAGGTCTTCAAAAAATGCGACAACTTAGAGGAACTTTTACTTAAAGCTACTGAACCGAGGTTTTTATACAAGG
CTTTGGTTAGTTATGAAGATAGGTCTTTACCTAAAAATGCAGGGTTCAAATGGAATAGTCCTGTGCAAGGAGCTTGGTCA
AGAAAATTAACTACTGATGAGGCAAAAAATCTTGATTTTAGAGTTGAGATTTTGAATTAA

Upstream 100 bases:

>100_bases
ATGTTTCAAAAAATATTTTCTAGGCTGTTTTTTAATTTATATTAATTTAAAAGAAATATTTATTAAATGCGTCAAGATAA
ATGAAAGTATTTTGAGTTAA

Downstream 100 bases:

>100_bases
TATTTATTTAATTTTTGACTAAGAAAATATTTAGTGCATCTTGCAAGGCATCCATTTATTACCCATTTTATGTGCTCCAA
TACATCCGTATTTTGAAGCA

Product: putative DNA polymerase III, epsilon subunit

Products: diphosphate; DNAn+1

Alternate protein names: DNA Polymerase III Subunit Epsilon; Exonuclease; Exonuclease RNAse T And DNA Polymerase III; Exonuclease RNAse T/DNA Polymerase III; 3--5' Exonuclease

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MELFNKKELNQLDFLHDQINTNPSEERVTNKNKKIEKILILDTETTGLDENKDEVIEIGCILFDVSFKCVLSQVSFLFPV
NNNEAEHVNGISAEVTNISQPWEDGLNFFLKLVDSSDFIVAHNVEFDKKWFGKGRLPKLNKKWICSLEDINWSFQKSLKT
RPSVTDLALSFSIPVWNLHRALSDCFYLSEVFKKCDNLEELLLKATEPRFLYKALVSYEDRSLPKNAGFKWNSPVQGAWS
RKLTTDEAKNLDFRVEILN

Sequences:

>Translated_259_residues
MELFNKKELNQLDFLHDQINTNPSEERVTNKNKKIEKILILDTETTGLDENKDEVIEIGCILFDVSFKCVLSQVSFLFPV
NNNEAEHVNGISAEVTNISQPWEDGLNFFLKLVDSSDFIVAHNVEFDKKWFGKGRLPKLNKKWICSLEDINWSFQKSLKT
RPSVTDLALSFSIPVWNLHRALSDCFYLSEVFKKCDNLEELLLKATEPRFLYKALVSYEDRSLPKNAGFKWNSPVQGAWS
RKLTTDEAKNLDFRVEILN
>Mature_259_residues
MELFNKKELNQLDFLHDQINTNPSEERVTNKNKKIEKILILDTETTGLDENKDEVIEIGCILFDVSFKCVLSQVSFLFPV
NNNEAEHVNGISAEVTNISQPWEDGLNFFLKLVDSSDFIVAHNVEFDKKWFGKGRLPKLNKKWICSLEDINWSFQKSLKT
RPSVTDLALSFSIPVWNLHRALSDCFYLSEVFKKCDNLEELLLKATEPRFLYKALVSYEDRSLPKNAGFKWNSPVQGAWS
RKLTTDEAKNLDFRVEILN

Specific function: Unknown

COG id: COG0847

COG function: function code L; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.7.7.7

Molecular weight: Translated: 29971; Mature: 29971

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELFNKKELNQLDFLHDQINTNPSEERVTNKNKKIEKILILDTETTGLDENKDEVIEIGC
CCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCEEEEEEEECCCCCCCCCCCHHEEHHH
ILFDVSFKCVLSQVSFLFPVNNNEAEHVNGISAEVTNISQPWEDGLNFFLKLVDSSDFIV
HEEHHHHHHHHHHHHEEEECCCCCHHHHCCCCCEECCCCCCHHHHHHHHHHHHCCCCEEE
AHNVEFDKKWFGKGRLPKLNKKWICSLEDINWSFQKSLKTRPSVTDLALSFSIPVWNLHR
EECCCCCHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHCCCCCHHHEEEEECCCHHHHHH
ALSDCFYLSEVFKKCDNLEELLLKATEPRFLYKALVSYEDRSLPKNAGFKWNSPVQGAWS
HHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
RKLTTDEAKNLDFRVEILN
CCCCCCHHCCCEEEEEEEC
>Mature Secondary Structure
MELFNKKELNQLDFLHDQINTNPSEERVTNKNKKIEKILILDTETTGLDENKDEVIEIGC
CCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCEEEEEEEECCCCCCCCCCCHHEEHHH
ILFDVSFKCVLSQVSFLFPVNNNEAEHVNGISAEVTNISQPWEDGLNFFLKLVDSSDFIV
HEEHHHHHHHHHHHHEEEECCCCCHHHHCCCCCEECCCCCCHHHHHHHHHHHHCCCCEEE
AHNVEFDKKWFGKGRLPKLNKKWICSLEDINWSFQKSLKTRPSVTDLALSFSIPVWNLHR
EECCCCCHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHCCCCCHHHEEEEECCCHHHHHH
ALSDCFYLSEVFKKCDNLEELLLKATEPRFLYKALVSYEDRSLPKNAGFKWNSPVQGAWS
HHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
RKLTTDEAKNLDFRVEILN
CCCCCCHHCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: deoxynucleoside triphosphate; DNAn

Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA