| Definition | Prochlorococcus marinus str. AS9601, complete genome. |
|---|---|
| Accession | NC_008816 |
| Length | 1,669,886 |
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The map label for this gene is rbcL [H]
Identifier: 123968141
GI number: 123968141
Start: 529175
End: 530590
Strand: Direct
Name: rbcL [H]
Synonym: A9601_06061
Alternate gene names: 123968141
Gene position: 529175-530590 (Clockwise)
Preceding gene: 123968140
Following gene: 123968142
Centisome position: 31.69
GC content: 40.68
Gene sequence:
>1416_bases ATGAGTAAGAAGTATGATGCAGGGGTAAAGGAGTACAGAGATACCTACTGGACTCCAGAATATGTACCCCTAGACACCGA TTTACTAGCCTGTTTCAAATGTACAGGTCAAGAAGGTGTCCCCAGAGAAGAAGTTGCAGCAGCTGTTGCCGCTGAATCTT CAACAGGTACTTGGTCAACAGTTTGGTCCGAGTTACTTACAGATTTAGAATTTTATAAAGGACGTTGTTATCGAATCGAA GACGTTCCTGGAGACCCTGAAGCTTTTTATGCTTTTATTGCATATCCTTTAGATCTTTTTGAAGAAGGTTCTATTACAAA CGTATTAACATCTCTTGTAGGAAACGTTTTTGGATTTAAAGCTCTAAGACACTTACGTCTAGAAGATATTAGATTCCCAA TCGCTTTCATCAAAACTTGCGGTGGTCCACCAAATGGAATCGTAGTTGAAAGAGATCGTTTAAACAAATATGGAAGACCT CTACTTGGTTGTACAATTAAACCTAAATTAGGATTATCTGGTAAAAACTATGGCCGAGTTGTATATGAGTGCCTTAGAGG TGGTCTCGATTTAACGAAGGATGACGAGAATATAAACTCTCAGCCATTCCAACGTTGGAGAGAAAGATTTGAGTTTGTTG CAGAAGCAGTTAAGCTTGCTCAGCAGGAAACTGGCGAAGTTAAAGGTCACTACCTAAACTGTACTGCCAACACTCCTGAA GAACTTTACGAAAGAGCTGAATTTGCAAAAGAGCTAGATATGCCAATCATCATGCATGATTATATAACTGGCGGTTTTAC TGCAAATACTGGATTAGCAAACTGGTGTCGTAAAAATGGCATGCTTCTACATATTCATAGAGCGATGCATGCTGTTATTG ATAGACATCCAAAACACGGTATCCATTTCAGGGTTCTAGCAAAATGTTTGAGACTCTCCGGAGGAGATCAACTACATACT GGAACTGTTGTTGGAAAACTAGAGGGTGATCGTCAAACAACTCTTGGTTACATTGACAACTTAAGAGAGTCATTTGTTCC CGAAGATAGATCAAGAGGTAACTTCTTTGATCAAGATTGGGGTTCAATGCCAGGAGTATTTGCTGTCGCATCAGGTGGTA TTCACGTATGGCATATGCCTGCACTCCTAGCGATTTTTGGAGATGATTCTTGTCTTCAGTTTGGTGGAGGAACACATGGT CATCCATGGGGTTCAGCTGCTGGAGCTGCAGCCAACAGAGTTGCTTTAGAAGCTTGCGTAAAAGCACGTAATGCTGGTCG CGAAATCGAAAAAGAGAGTAGAGACATTCTTATGGAAGCTGCTAAACACAGTCCTGAATTAGCTATCGCTCTTGAAACTT GGAAGGAAATTAAGTTTGAATTTGATACCGTCGACAAACTAGACGTTCAAGGTTAA
Upstream 100 bases:
>100_bases GTAATGGTGAATTTCTTGGTCAAAAGGACTAATAAATAAAGCAAGATTAATAAATTTTGCACAATAATTATTTTCCCTAC ACAGACCTAAATTTATCCTT
Downstream 100 bases:
>100_bases ACCAGATTTCAACATTGAGGAGATTCTTCTCCTCAAACTTCTACAAATCTCGTTCTATTACGAGTAATTTCATTCACATT TAAATTAATTATGCCTTTCC
Product: ribulose bisophosphate carboxylase
Products: NA
Alternate protein names: RuBisCO large subunit [H]
Number of amino acids: Translated: 471; Mature: 470
Protein sequence:
>471_residues MSKKYDAGVKEYRDTYWTPEYVPLDTDLLACFKCTGQEGVPREEVAAAVAAESSTGTWSTVWSELLTDLEFYKGRCYRIE DVPGDPEAFYAFIAYPLDLFEEGSITNVLTSLVGNVFGFKALRHLRLEDIRFPIAFIKTCGGPPNGIVVERDRLNKYGRP LLGCTIKPKLGLSGKNYGRVVYECLRGGLDLTKDDENINSQPFQRWRERFEFVAEAVKLAQQETGEVKGHYLNCTANTPE ELYERAEFAKELDMPIIMHDYITGGFTANTGLANWCRKNGMLLHIHRAMHAVIDRHPKHGIHFRVLAKCLRLSGGDQLHT GTVVGKLEGDRQTTLGYIDNLRESFVPEDRSRGNFFDQDWGSMPGVFAVASGGIHVWHMPALLAIFGDDSCLQFGGGTHG HPWGSAAGAAANRVALEACVKARNAGREIEKESRDILMEAAKHSPELAIALETWKEIKFEFDTVDKLDVQG
Sequences:
>Translated_471_residues MSKKYDAGVKEYRDTYWTPEYVPLDTDLLACFKCTGQEGVPREEVAAAVAAESSTGTWSTVWSELLTDLEFYKGRCYRIE DVPGDPEAFYAFIAYPLDLFEEGSITNVLTSLVGNVFGFKALRHLRLEDIRFPIAFIKTCGGPPNGIVVERDRLNKYGRP LLGCTIKPKLGLSGKNYGRVVYECLRGGLDLTKDDENINSQPFQRWRERFEFVAEAVKLAQQETGEVKGHYLNCTANTPE ELYERAEFAKELDMPIIMHDYITGGFTANTGLANWCRKNGMLLHIHRAMHAVIDRHPKHGIHFRVLAKCLRLSGGDQLHT GTVVGKLEGDRQTTLGYIDNLRESFVPEDRSRGNFFDQDWGSMPGVFAVASGGIHVWHMPALLAIFGDDSCLQFGGGTHG HPWGSAAGAAANRVALEACVKARNAGREIEKESRDILMEAAKHSPELAIALETWKEIKFEFDTVDKLDVQG >Mature_470_residues SKKYDAGVKEYRDTYWTPEYVPLDTDLLACFKCTGQEGVPREEVAAAVAAESSTGTWSTVWSELLTDLEFYKGRCYRIED VPGDPEAFYAFIAYPLDLFEEGSITNVLTSLVGNVFGFKALRHLRLEDIRFPIAFIKTCGGPPNGIVVERDRLNKYGRPL LGCTIKPKLGLSGKNYGRVVYECLRGGLDLTKDDENINSQPFQRWRERFEFVAEAVKLAQQETGEVKGHYLNCTANTPEE LYERAEFAKELDMPIIMHDYITGGFTANTGLANWCRKNGMLLHIHRAMHAVIDRHPKHGIHFRVLAKCLRLSGGDQLHTG TVVGKLEGDRQTTLGYIDNLRESFVPEDRSRGNFFDQDWGSMPGVFAVASGGIHVWHMPALLAIFGDDSCLQFGGGTHGH PWGSAAGAAANRVALEACVKARNAGREIEKESRDILMEAAKHSPELAIALETWKEIKFEFDTVDKLDVQG
Specific function: RuBisCO catalyzes two reactions:the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultan
COG id: COG1850
COG function: function code G; Ribulose 1,5-bisphosphate carboxylase, large subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the RuBisCO large chain family. Type I subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020888 - InterPro: IPR000685 - InterPro: IPR017443 - InterPro: IPR017444 [H]
Pfam domain/function: PF00016 RuBisCO_large; PF02788 RuBisCO_large_N [H]
EC number: =4.1.1.39 [H]
Molecular weight: Translated: 52574; Mature: 52443
Theoretical pI: Translated: 6.01; Mature: 6.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKKYDAGVKEYRDTYWTPEYVPLDTDLLACFKCTGQEGVPREEVAAAVAAESSTGTWST CCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHH VWSELLTDLEFYKGRCYRIEDVPGDPEAFYAFIAYPLDLFEEGSITNVLTSLVGNVFGFK HHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH ALRHLRLEDIRFPIAFIKTCGGPPNGIVVERDRLNKYGRPLLGCTIKPKLGLSGKNYGRV HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHCCCCEEEEEECCCCCCCCCCHHHH VYECLRGGLDLTKDDENINSQPFQRWRERFEFVAEAVKLAQQETGEVKGHYLNCTANTPE HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHH ELYERAEFAKELDMPIIMHDYITGGFTANTGLANWCRKNGMLLHIHRAMHAVIDRHPKHG HHHHHHHHHHHCCCCEEEHHHCCCCCCCCCCHHHHHHHCCEEEEHHHHHHHHHHCCCCCC IHFRVLAKCLRLSGGDQLHTGTVVGKLEGDRQTTLGYIDNLRESFVPEDRSRGNFFDQDW CHHHHHHHHHHCCCCCEEECCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC GSMPGVFAVASGGIHVWHMPALLAIFGDDSCLQFGGGTHGHPWGSAAGAAANRVALEACV CCCCCEEEEECCCEEEEEHHHHHHHCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHH KARNAGREIEKESRDILMEAAKHSPELAIALETWKEIKFEFDTVDKLDVQG HHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHEEECCCCCCCCCCC >Mature Secondary Structure SKKYDAGVKEYRDTYWTPEYVPLDTDLLACFKCTGQEGVPREEVAAAVAAESSTGTWST CCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHH VWSELLTDLEFYKGRCYRIEDVPGDPEAFYAFIAYPLDLFEEGSITNVLTSLVGNVFGFK HHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH ALRHLRLEDIRFPIAFIKTCGGPPNGIVVERDRLNKYGRPLLGCTIKPKLGLSGKNYGRV HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHCCCCEEEEEECCCCCCCCCCHHHH VYECLRGGLDLTKDDENINSQPFQRWRERFEFVAEAVKLAQQETGEVKGHYLNCTANTPE HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHH ELYERAEFAKELDMPIIMHDYITGGFTANTGLANWCRKNGMLLHIHRAMHAVIDRHPKHG HHHHHHHHHHHCCCCEEEHHHCCCCCCCCCCHHHHHHHCCEEEEHHHHHHHHHHCCCCCC IHFRVLAKCLRLSGGDQLHTGTVVGKLEGDRQTTLGYIDNLRESFVPEDRSRGNFFDQDW CHHHHHHHHHHCCCCCEEECCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC GSMPGVFAVASGGIHVWHMPALLAIFGDDSCLQFGGGTHGHPWGSAAGAAANRVALEACV CCCCCEEEEECCCEEEEEHHHHHHHCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHH KARNAGREIEKESRDILMEAAKHSPELAIALETWKEIKFEFDTVDKLDVQG HHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA