| Definition | Prochlorococcus marinus str. AS9601, complete genome. |
|---|---|
| Accession | NC_008816 |
| Length | 1,669,886 |
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The map label for this gene is 123968072
Identifier: 123968072
GI number: 123968072
Start: 465545
End: 466057
Strand: Direct
Name: 123968072
Synonym: A9601_05351
Alternate gene names: NA
Gene position: 465545-466057 (Clockwise)
Preceding gene: 123968071
Following gene: 123968073
Centisome position: 27.88
GC content: 36.45
Gene sequence:
>513_bases TTGAGTCGCTCTTTAGATCTACCAGCAACTGAAGGTGTTGATGCCTTAGCTCAAGAACTTGCAAAACTCCAAGATAATGG GAAAAGGAGAATTGCTTTTTTAGGTAGTAGACACGTGCCGGTCGTAGATATCCACTTAATTGAGTTGATAGCAAGGTCGT TAGCAGAGGAAGGACATAATATCCTTACGTCTGGATCTCAAGGTGTTAATGCAGCTGTTATTCGAGCGGTCTTAGATATT AATCCATCATTATTAACTGTTTTATTACCACAAAGTCTTGATAGACAAATTCCTGAAATAAAGGACCAACTTGAGAGGGT TATGCATTTGGTTGAAAAAAGTGAAAATGATGAATTACCTTTGCCACTTGCAAGTAGTCTTTGTAATCAAGAAATTATTA CTAGGTGCGATCAATTAATATGCTTTGCCTTTCACGATAGTGAAACTTTGCTAAATAGTTGTAGATGTGCTGAAGAAATG GGCAAAGTGGTTAGTTTGTTATTTTTTGATTAA
Upstream 100 bases:
>100_bases GTTCAAGAGCATGTAAATCTAAAAAGAATTCTCGAAAAGATAGATTTTCCCTGCAATTTTTCAGATAAATGCTAATTTCA AATATAGGAACTTTATTATT
Downstream 100 bases:
>100_bases ATTAACCCATTTCCCCTTAATAAAAGATGATTTATGCTAATAATATTTAGCGTATAATAATTTACTATGGCAGAAAGTTT TTCATTTGATGTAGTTTCTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 170; Mature: 169
Protein sequence:
>170_residues MSRSLDLPATEGVDALAQELAKLQDNGKRRIAFLGSRHVPVVDIHLIELIARSLAEEGHNILTSGSQGVNAAVIRAVLDI NPSLLTVLLPQSLDRQIPEIKDQLERVMHLVEKSENDELPLPLASSLCNQEIITRCDQLICFAFHDSETLLNSCRCAEEM GKVVSLLFFD
Sequences:
>Translated_170_residues MSRSLDLPATEGVDALAQELAKLQDNGKRRIAFLGSRHVPVVDIHLIELIARSLAEEGHNILTSGSQGVNAAVIRAVLDI NPSLLTVLLPQSLDRQIPEIKDQLERVMHLVEKSENDELPLPLASSLCNQEIITRCDQLICFAFHDSETLLNSCRCAEEM GKVVSLLFFD >Mature_169_residues SRSLDLPATEGVDALAQELAKLQDNGKRRIAFLGSRHVPVVDIHLIELIARSLAEEGHNILTSGSQGVNAAVIRAVLDIN PSLLTVLLPQSLDRQIPEIKDQLERVMHLVEKSENDELPLPLASSLCNQEIITRCDQLICFAFHDSETLLNSCRCAEEMG KVVSLLFFD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18780; Mature: 18649
Theoretical pI: Translated: 4.62; Mature: 4.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 3.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRSLDLPATEGVDALAQELAKLQDNGKRRIAFLGSRHVPVVDIHLIELIARSLAEEGHN CCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCC ILTSGSQGVNAAVIRAVLDINPSLLTVLLPQSLDRQIPEIKDQLERVMHLVEKSENDELP EECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCC LPLASSLCNQEIITRCDQLICFAFHDSETLLNSCRCAEEMGKVVSLLFFD CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SRSLDLPATEGVDALAQELAKLQDNGKRRIAFLGSRHVPVVDIHLIELIARSLAEEGHN CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCC ILTSGSQGVNAAVIRAVLDINPSLLTVLLPQSLDRQIPEIKDQLERVMHLVEKSENDELP EECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCC LPLASSLCNQEIITRCDQLICFAFHDSETLLNSCRCAEEMGKVVSLLFFD CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA