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The map label for this gene is yggS [C]

Identifier: 123967982

GI number: 123967982

Start: 386113

End: 386685

Strand: Direct

Name: yggS [C]

Synonym: A9601_04451

Alternate gene names: 123967982

Gene position: 386113-386685 (Clockwise)

Preceding gene: 123967981

Following gene: 123967983

Centisome position: 23.12

GC content: 32.64

Gene sequence:

>573_bases
GTGAGTAAAGGATTTAAAAGTCAAGAAATCAAGACTATTCAAAATATAGGTCAGAACGATTTTGGTGAAAGTAAGGTTCA
AGAGGCGTTTGAAAAACAATTAACATTAAAAGAGCTTAAACAAATAAATTGGCACTTTATTGGAAGAATACAAAGTAATA
AAATAAGAAAAATAGTTCAAAATTTTAAATATATTCATTCAGTAGATTCATTTGAAAAGTTGCAAAAGATTTCTAATATT
TCACGTGAAGAGAAGAAAAAACCATTCATTATGTTGCAGGTTAAGTTGAGTGATGACCCTACTAAAGGAGGCTTTAATCC
TGAATCTTTAATTTTGAAATGGACAGAAATTCAAGAGTTGAAAAATATTTCATTAACCGGTTTGATGACTATCAATCCTA
AAGGACTTAGCCCTAAAGAAAATTTAGGATTGTTCAAAAAATGTCGCGCTCTCGCTGATTACCTGCAACTACCAGATTGT
TCCATGGGGATGTCAGGTGATTGGGAGGAAGCTATTGACGCTGGATCAACTTGGTTAAGATTAGGAGCATTGATTTTTGG
AGGCAGATCCTAA

Upstream 100 bases:

>100_bases
ATGGGAGAATTTATTTACGCAAACTTTCTTATAAAATGTGAACTCTGCAAATTATTTAAAAATAAAAAATAAAATACCAT
CAAATATAAATATTCTTGCG

Downstream 100 bases:

>100_bases
TTAGTTATTTTTTTATAAAAATCTTATCTATAAACTTGCAGTAAAGTTCAACTAACGTTATTTAAGTATAGGTAGTTTAT
TCATTTAAAAAATGAATCTA

Product: TIM-barrel fold family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 189

Protein sequence:

>190_residues
MSKGFKSQEIKTIQNIGQNDFGESKVQEAFEKQLTLKELKQINWHFIGRIQSNKIRKIVQNFKYIHSVDSFEKLQKISNI
SREEKKKPFIMLQVKLSDDPTKGGFNPESLILKWTEIQELKNISLTGLMTINPKGLSPKENLGLFKKCRALADYLQLPDC
SMGMSGDWEEAIDAGSTWLRLGALIFGGRS

Sequences:

>Translated_190_residues
MSKGFKSQEIKTIQNIGQNDFGESKVQEAFEKQLTLKELKQINWHFIGRIQSNKIRKIVQNFKYIHSVDSFEKLQKISNI
SREEKKKPFIMLQVKLSDDPTKGGFNPESLILKWTEIQELKNISLTGLMTINPKGLSPKENLGLFKKCRALADYLQLPDC
SMGMSGDWEEAIDAGSTWLRLGALIFGGRS
>Mature_189_residues
SKGFKSQEIKTIQNIGQNDFGESKVQEAFEKQLTLKELKQINWHFIGRIQSNKIRKIVQNFKYIHSVDSFEKLQKISNIS
REEKKKPFIMLQVKLSDDPTKGGFNPESLILKWTEIQELKNISLTGLMTINPKGLSPKENLGLFKKCRALADYLQLPDCS
MGMSGDWEEAIDAGSTWLRLGALIFGGRS

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=194, Percent_Identity=35.5670103092784, Blast_Score=87, Evalue=6e-18,
Organism=Escherichia coli, GI1789321, Length=199, Percent_Identity=33.1658291457286, Blast_Score=101, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI17533025, Length=209, Percent_Identity=33.0143540669856, Blast_Score=70, Evalue=9e-13,
Organism=Saccharomyces cerevisiae, GI6319435, Length=205, Percent_Identity=34.1463414634146, Blast_Score=84, Evalue=1e-17,
Organism=Drosophila melanogaster, GI45550861, Length=193, Percent_Identity=35.7512953367876, Blast_Score=93, Evalue=8e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 21652; Mature: 21521

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKGFKSQEIKTIQNIGQNDFGESKVQEAFEKQLTLKELKQINWHFIGRIQSNKIRKIVQ
CCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHEEEECHHHHHHHHH
NFKYIHSVDSFEKLQKISNISREEKKKPFIMLQVKLSDDPTKGGFNPESLILKWTEIQEL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCHHHHEEHHHHHHHH
KNISLTGLMTINPKGLSPKENLGLFKKCRALADYLQLPDCSMGMSGDWEEAIDAGSTWLR
HCCCEEEEEEECCCCCCCHHHCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCHHHHH
LGALIFGGRS
HHHHHHCCCC
>Mature Secondary Structure 
SKGFKSQEIKTIQNIGQNDFGESKVQEAFEKQLTLKELKQINWHFIGRIQSNKIRKIVQ
CCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHEEEECHHHHHHHHH
NFKYIHSVDSFEKLQKISNISREEKKKPFIMLQVKLSDDPTKGGFNPESLILKWTEIQEL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCHHHHEEHHHHHHHH
KNISLTGLMTINPKGLSPKENLGLFKKCRALADYLQLPDCSMGMSGDWEEAIDAGSTWLR
HCCCEEEEEEECCCCCCCHHHCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCHHHHH
LGALIFGGRS
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]