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The map label for this gene is 123967856

Identifier: 123967856

GI number: 123967856

Start: 294668

End: 295684

Strand: Direct

Name: 123967856

Synonym: A9601_03191

Alternate gene names: NA

Gene position: 294668-295684 (Clockwise)

Preceding gene: 123967855

Following gene: 123967857

Centisome position: 17.65

GC content: 35.2

Gene sequence:

>1017_bases
ATGAAAAAAATTATTACTAGTATTCCCAATCTTCTTTTATCAGTTCTCCTTTGTTTTGTATTGAGCAGTTGTTCATCTAC
AGGAGTAAAGATGAGTGATAGCAGCCCTTGGAAAACAATTCAGTTTGAGGACCAGGCTAATGCTTTAGATGTTGATTTTA
TAGATAATAAAAATGGATTTTTAGTAGGTTCTAATAGACTTATTATGGAATCTAATGATGGAGGGGAAACTTGGGAAAAA
AGAAATTTAGATTTACCAAGTGAAGAGAACTTTCGTCTTCTAGATATAGATTTTAAAGGGGAAGAGGGATGGTTAATAGG
TCAGCCTTCATTAGTTATGCATACACTTGATGCAGGAAAGAATTGGACACGTTTATCTCTAGGTAACAAATTACCAGGCC
AACCATTTCTAATAACAACAGTTGATGCAGGTGTTGCAGAATTGGCTACCACTGCAGGTGCTATATATGAAACATCAGAT
AGTGGTGAATCATGGAATGCAAAAGTTGTTGATGCATCTGGTTCTGGAGGTGTAAGAGATTTAAGAAGGACTAATAAGGG
AGATTATGTCAGTGTAAGTAGTCTAGGCAATTTCTTTTCTACTTTGGAAAAGGATAGTGACGCATGGATAGCTCATCAAA
GAGCAAGTAGCAAAAGAGTTCAAAGTATTGGTTTTAATCCAGAAGGAAGTTTATGGATGCTTTCTAGAGGAGCAGAAATT
AGATTTAATGAAGATACTAATGACTTAGAAAATTGGTCAAAGCCTATTATCCCAATTCTGAATGGATACAATTATCTAGA
CATGGGATGGGATCCAAATGGTGATATATGGGCTGGCGGGGGTAATGGAACTTTAATAGTAAGTAAAGATCAAGGTAAAA
CTTGGAATAAAGATCCTATTGCTTCTGAATTGCCAACAAACTACATTAAAATAGTTTTTCTTGATAAGGAGGCTTTAGAC
AATCAAAAAGGATTTGTACTTGGTGAGCGTGGTTATATCCTTAAATGGAATAGCTAA

Upstream 100 bases:

>100_bases
CAGTTTACCTCCTGGACAAAAAAACATATTGATTTTTGGAGGTCTGGCGTTTGCTGCCGCTATGTTCCTTTCTTTGTACT
CTTTGCATTAATATATACAA

Downstream 100 bases:

>100_bases
CTTTAAATAAATCGATTTAATAGTAAAAAAAAAATTAATTTTTGAAAGATTTAGCAACTGTCTGTAACCAACCTGTTAAT
TTCTTCGCGAACTTATGATT

Product: Ycf48-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MKKIITSIPNLLLSVLLCFVLSSCSSTGVKMSDSSPWKTIQFEDQANALDVDFIDNKNGFLVGSNRLIMESNDGGETWEK
RNLDLPSEENFRLLDIDFKGEEGWLIGQPSLVMHTLDAGKNWTRLSLGNKLPGQPFLITTVDAGVAELATTAGAIYETSD
SGESWNAKVVDASGSGGVRDLRRTNKGDYVSVSSLGNFFSTLEKDSDAWIAHQRASSKRVQSIGFNPEGSLWMLSRGAEI
RFNEDTNDLENWSKPIIPILNGYNYLDMGWDPNGDIWAGGGNGTLIVSKDQGKTWNKDPIASELPTNYIKIVFLDKEALD
NQKGFVLGERGYILKWNS

Sequences:

>Translated_338_residues
MKKIITSIPNLLLSVLLCFVLSSCSSTGVKMSDSSPWKTIQFEDQANALDVDFIDNKNGFLVGSNRLIMESNDGGETWEK
RNLDLPSEENFRLLDIDFKGEEGWLIGQPSLVMHTLDAGKNWTRLSLGNKLPGQPFLITTVDAGVAELATTAGAIYETSD
SGESWNAKVVDASGSGGVRDLRRTNKGDYVSVSSLGNFFSTLEKDSDAWIAHQRASSKRVQSIGFNPEGSLWMLSRGAEI
RFNEDTNDLENWSKPIIPILNGYNYLDMGWDPNGDIWAGGGNGTLIVSKDQGKTWNKDPIASELPTNYIKIVFLDKEALD
NQKGFVLGERGYILKWNS
>Mature_338_residues
MKKIITSIPNLLLSVLLCFVLSSCSSTGVKMSDSSPWKTIQFEDQANALDVDFIDNKNGFLVGSNRLIMESNDGGETWEK
RNLDLPSEENFRLLDIDFKGEEGWLIGQPSLVMHTLDAGKNWTRLSLGNKLPGQPFLITTVDAGVAELATTAGAIYETSD
SGESWNAKVVDASGSGGVRDLRRTNKGDYVSVSSLGNFFSTLEKDSDAWIAHQRASSKRVQSIGFNPEGSLWMLSRGAEI
RFNEDTNDLENWSKPIIPILNGYNYLDMGWDPNGDIWAGGGNGTLIVSKDQGKTWNKDPIASELPTNYIKIVFLDKEALD
NQKGFVLGERGYILKWNS

Specific function: Unknown. The ortholog in A.thaliana is involved in photosystem II (PSII) assembly, but knockout of the corresponding gene in Synechoccus PCC 7002 has no effect on PSII activity [H]

COG id: COG4447

COG function: function code R; Uncharacterized protein related to plant photosystem II stability/assembly factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 BNR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002860
- InterPro:   IPR016705
- InterPro:   IPR015943 [H]

Pfam domain/function: PF02012 BNR [H]

EC number: NA

Molecular weight: Translated: 37286; Mature: 37286

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIITSIPNLLLSVLLCFVLSSCSSTGVKMSDSSPWKTIQFEDQANALDVDFIDNKNGF
CCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEEEECCCCCEEEEEEEECCCCE
LVGSNRLIMESNDGGETWEKRNLDLPSEENFRLLDIDFKGEEGWLIGQPSLVMHTLDAGK
EEECCEEEEECCCCCCCHHHCCCCCCCCCCEEEEEEEECCCCCEEECCCCEEEEEECCCC
NWTRLSLGNKLPGQPFLITTVDAGVAELATTAGAIYETSDSGESWNAKVVDASGSGGVRD
CEEEEECCCCCCCCCEEEEEECCCHHHHHHHCCEEEEECCCCCCCCEEEEECCCCCCHHH
LRRTNKGDYVSVSSLGNFFSTLEKDSDAWIAHQRASSKRVQSIGFNPEGSLWMLSRGAEI
HHHCCCCCEEEHHHHHHHHHHHHCCCCCEEEHHHCCHHHHHHCCCCCCCCEEEEECCCEE
RFNEDTNDLENWSKPIIPILNGYNYLDMGWDPNGDIWAGGGNGTLIVSKDQGKTWNKDPI
EECCCCCHHHHHCCCCEEEECCCCEEECCCCCCCCEEECCCCEEEEEECCCCCCCCCCCC
ASELPTNYIKIVFLDKEALDNQKGFVLGERGYILKWNS
CHHCCCCEEEEEEEEHHHCCCCCCEEEECCCEEEEECC
>Mature Secondary Structure
MKKIITSIPNLLLSVLLCFVLSSCSSTGVKMSDSSPWKTIQFEDQANALDVDFIDNKNGF
CCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEEEECCCCCEEEEEEEECCCCE
LVGSNRLIMESNDGGETWEKRNLDLPSEENFRLLDIDFKGEEGWLIGQPSLVMHTLDAGK
EEECCEEEEECCCCCCCHHHCCCCCCCCCCEEEEEEEECCCCCEEECCCCEEEEEECCCC
NWTRLSLGNKLPGQPFLITTVDAGVAELATTAGAIYETSDSGESWNAKVVDASGSGGVRD
CEEEEECCCCCCCCCEEEEEECCCHHHHHHHCCEEEEECCCCCCCCEEEEECCCCCCHHH
LRRTNKGDYVSVSSLGNFFSTLEKDSDAWIAHQRASSKRVQSIGFNPEGSLWMLSRGAEI
HHHCCCCCEEEHHHHHHHHHHHHCCCCCEEEHHHCCHHHHHHCCCCCCCCEEEEECCCEE
RFNEDTNDLENWSKPIIPILNGYNYLDMGWDPNGDIWAGGGNGTLIVSKDQGKTWNKDPI
EECCCCCHHHHHCCCCEEEECCCCEEECCCCCCCCEEECCCCEEEEEECCCCCCCCCCCC
ASELPTNYIKIVFLDKEALDNQKGFVLGERGYILKWNS
CHHCCCCEEEEEEEEHHHCCCCCCEEEECCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA