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The map label for this gene is ybeY [C]

Identifier: 123967737

GI number: 123967737

Start: 184619

End: 185158

Strand: Direct

Name: ybeY [C]

Synonym: A9601_02001

Alternate gene names: 123967737

Gene position: 184619-185158 (Clockwise)

Preceding gene: 123967736

Following gene: 123967738

Centisome position: 11.06

GC content: 24.07

Gene sequence:

>540_bases
ATGAAAGAAAAAATTATTTCTGAAATAAATTTAGATTTGGTTTTTCAATGTAATAATTTCTCTCAATTTTCAAATAAGTT
AAAAGATACTAAAACTAATCTTATTTTTGAATCTATTTTTTGGGAGAAAGTTTTTTTATCTTGGATAAATACTATATTAA
AAAATGAGGATTATGAATTACCAAATTATATTTTTGATAAAAAATCTTTTTCATTAGGCTTACAGATAATATCTAATCAA
GAAATTGCTTCTTTGAATAAGAAATGGATGCAAAAAAATGGTCCAACTGATGTTCTATCTTTTCCAATTATTTCTGATGA
ATCTCTAAATAATTTAGATCATATAGAGTTGGGAGATATTTTTATATCATTAGAGATGGCACTTGAGCAATCTTATGAAT
ATAAACATTCAATCTATAGAGAGATGATCTGGTTGGCTAGTCATGGATTTTTACATCTTTTGGGATGGGAACATAATAAT
GAGCATGATTTAGAAAATATGTTAAATTTCCAAGAATATTTAATTACTCGATTAGATTAA

Upstream 100 bases:

>100_bases
AAAAAGTATTTCTCATTTTTCAATAACCTTTCTAGTTTTAATTGGGATATTAATACTTGTAGCCACAATAGGTAAGCCCA
ATATTCCAGTTTAAGAATGT

Downstream 100 bases:

>100_bases
AAATAAATGGAAAAAAAAATAAACTATCTAGAAAATAGAAAAGAATCATACAAAACTTCTAGTAATATATTTATAAGTTT
TAAGTATGCTTTCAGTGGTA

Product: metal-dependent hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MKEKIISEINLDLVFQCNNFSQFSNKLKDTKTNLIFESIFWEKVFLSWINTILKNEDYELPNYIFDKKSFSLGLQIISNQ
EIASLNKKWMQKNGPTDVLSFPIISDESLNNLDHIELGDIFISLEMALEQSYEYKHSIYREMIWLASHGFLHLLGWEHNN
EHDLENMLNFQEYLITRLD

Sequences:

>Translated_179_residues
MKEKIISEINLDLVFQCNNFSQFSNKLKDTKTNLIFESIFWEKVFLSWINTILKNEDYELPNYIFDKKSFSLGLQIISNQ
EIASLNKKWMQKNGPTDVLSFPIISDESLNNLDHIELGDIFISLEMALEQSYEYKHSIYREMIWLASHGFLHLLGWEHNN
EHDLENMLNFQEYLITRLD
>Mature_179_residues
MKEKIISEINLDLVFQCNNFSQFSNKLKDTKTNLIFESIFWEKVFLSWINTILKNEDYELPNYIFDKKSFSLGLQIISNQ
EIASLNKKWMQKNGPTDVLSFPIISDESLNNLDHIELGDIFISLEMALEQSYEYKHSIYREMIWLASHGFLHLLGWEHNN
EHDLENMLNFQEYLITRLD

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 21289; Mature: 21289

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEKIISEINLDLVFQCNNFSQFSNKLKDTKTNLIFESIFWEKVFLSWINTILKNEDYEL
CCCHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PNYIFDKKSFSLGLQIISNQEIASLNKKWMQKNGPTDVLSFPIISDESLNNLDHIELGDI
CCHHHCCCCHHHHHHEECCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEHHHH
FISLEMALEQSYEYKHSIYREMIWLASHGFLHLLGWEHNNEHDLENMLNFQEYLITRLD
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKEKIISEINLDLVFQCNNFSQFSNKLKDTKTNLIFESIFWEKVFLSWINTILKNEDYEL
CCCHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PNYIFDKKSFSLGLQIISNQEIASLNKKWMQKNGPTDVLSFPIISDESLNNLDHIELGDI
CCHHHCCCCHHHHHHEECCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEHHHH
FISLEMALEQSYEYKHSIYREMIWLASHGFLHLLGWEHNNEHDLENMLNFQEYLITRLD
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA