| Definition | Prochlorococcus marinus str. AS9601, complete genome. |
|---|---|
| Accession | NC_008816 |
| Length | 1,669,886 |
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The map label for this gene is menF [H]
Identifier: 123967732
GI number: 123967732
Start: 180639
End: 182051
Strand: Direct
Name: menF [H]
Synonym: A9601_01951
Alternate gene names: 123967732
Gene position: 180639-182051 (Clockwise)
Preceding gene: 123967728
Following gene: 123967735
Centisome position: 10.82
GC content: 28.1
Gene sequence:
>1413_bases ATGAAAAATGATTTAAACTTAACAGATTTTTTAAAAGATGTATTTTCCTCTTTCGATAAGAAAGTTGAAAATTCTGGATT AGTAAGTATTTGTGTTGAGATTCCTTGTATTGATTTATTCCAAGTTTATGCATTGTTAATAAATCAATATCCGTTTTCTT CATTTTGGGAGGAATCTGATGGAATTTCATATATAGCTTTCGAGAAGTGTAAATATGTTACTCTGGATGGCCCAAAAAGA TTTGAGGTAGCAAAAGAGTTTAATTCTGAGAATTTTAAAAATTTAATTAACTTAACTAATGAATCGCATAATTCTGCACT TTCAAAAATAATTTATTTATTTTCTTTCTCTGAAAATTTGAATAATAAGAATTTACCTTCAGATATCCCTAGTTTGGAAG CCATTTTGCCAAAAATATTAATTACTAAAAGTGGCAAGAATTGCTGGTTAAGAATCAATGGTCATGTTGAAGGTAAATCA TCATTAAGAACATTAATTGAAGAAATATGGACAATTAGAAATCAAGTTTTTAATTCTGGCTCAGAATTAATAAAATCATC TGGCTTAAAAACTAGTTTTGATTCCCCTTTTATTGATGATTTCTCACGCTCCTTAGAAACTTCTAAAACAAACATGAAAA AAGTAGTAAATAGTGGAATTCAATTAGTAGATAAAGATATCCTCGAAAAGATAGTTTTAGCTAATAGGATTAAAATAAAA CTTAAAAATAAATTAGATTTAGTAGAAATTTTAAAAAGATTTAAAAAGAATCAACCAAATACATGTAGATACGTTTGGAA AAGGAATAGTAAGGATATTTTGTTTGGAGCATCTCCAGAAAAATTATTTTCTTTCTCTAAACCTAATTTAACTTTAGAGG CTCTTGCTGGAACTATCTCTACTAATTCAAATTTTGAGAAACTCCTAACAAGTACTAAAGACTTAAAGGAACATAATTAT GTAATACAACATTTGATTAAATCTTTAGAAGTTTCAAAAATAACAAACTTTAAAAAAAGTGATATCAAGGTAAATTCATT TGGAGATATTTCTCATTTGCAAACACTCATTTTCTCTAAAGTTGAAAATATTTGTCCTTTTGAATTGCTTAAAAACTTAC ATCCATCTCCAGCTGTTTGTGGATACCCAAAAAATGCAGCATTGGATTGGATAAATACTCTTGAATCTTTTCCTAGAGGA AATTATGCTTCTCCAATGGGTTGGGTTGACTCATCAGGCAATGCTTCATTTCTTTTGGCAATAAGAGGCGCAAGATGTAT TGAAGAAAATATTGAATTTACTGCAGGTTCAGGTTTAGTTTCTGGCTCCGTTTTAGAGAAAGAAATAGATGAGATTAAAT TAAAATTTGAATCTATAGTAAAACAGATATTTTGCGCTAAAAACCCTAGATAA
Upstream 100 bases:
>100_bases TTTAATTAACACGCAAAATTAGATAATTATTGAATGTAGTTTATAAATTGAGTTACATTTTTTACTTTATTGCATCATTT TTAGTTATTTTCAATAAGTA
Downstream 100 bases:
>100_bases TTTCTACTAATTTTTCAATAACTTCCTCTGAAACATTTTTATTGGATAAATTTTCTATTTCTCTTAAACCTGTTGGACTG GTTACATTAATCTCGCTAAG
Product: isochorismate synthase
Products: NA
Alternate protein names: Isochorismate mutase [H]
Number of amino acids: Translated: 470; Mature: 470
Protein sequence:
>470_residues MKNDLNLTDFLKDVFSSFDKKVENSGLVSICVEIPCIDLFQVYALLINQYPFSSFWEESDGISYIAFEKCKYVTLDGPKR FEVAKEFNSENFKNLINLTNESHNSALSKIIYLFSFSENLNNKNLPSDIPSLEAILPKILITKSGKNCWLRINGHVEGKS SLRTLIEEIWTIRNQVFNSGSELIKSSGLKTSFDSPFIDDFSRSLETSKTNMKKVVNSGIQLVDKDILEKIVLANRIKIK LKNKLDLVEILKRFKKNQPNTCRYVWKRNSKDILFGASPEKLFSFSKPNLTLEALAGTISTNSNFEKLLTSTKDLKEHNY VIQHLIKSLEVSKITNFKKSDIKVNSFGDISHLQTLIFSKVENICPFELLKNLHPSPAVCGYPKNAALDWINTLESFPRG NYASPMGWVDSSGNASFLLAIRGARCIEENIEFTAGSGLVSGSVLEKEIDEIKLKFESIVKQIFCAKNPR
Sequences:
>Translated_470_residues MKNDLNLTDFLKDVFSSFDKKVENSGLVSICVEIPCIDLFQVYALLINQYPFSSFWEESDGISYIAFEKCKYVTLDGPKR FEVAKEFNSENFKNLINLTNESHNSALSKIIYLFSFSENLNNKNLPSDIPSLEAILPKILITKSGKNCWLRINGHVEGKS SLRTLIEEIWTIRNQVFNSGSELIKSSGLKTSFDSPFIDDFSRSLETSKTNMKKVVNSGIQLVDKDILEKIVLANRIKIK LKNKLDLVEILKRFKKNQPNTCRYVWKRNSKDILFGASPEKLFSFSKPNLTLEALAGTISTNSNFEKLLTSTKDLKEHNY VIQHLIKSLEVSKITNFKKSDIKVNSFGDISHLQTLIFSKVENICPFELLKNLHPSPAVCGYPKNAALDWINTLESFPRG NYASPMGWVDSSGNASFLLAIRGARCIEENIEFTAGSGLVSGSVLEKEIDEIKLKFESIVKQIFCAKNPR >Mature_470_residues MKNDLNLTDFLKDVFSSFDKKVENSGLVSICVEIPCIDLFQVYALLINQYPFSSFWEESDGISYIAFEKCKYVTLDGPKR FEVAKEFNSENFKNLINLTNESHNSALSKIIYLFSFSENLNNKNLPSDIPSLEAILPKILITKSGKNCWLRINGHVEGKS SLRTLIEEIWTIRNQVFNSGSELIKSSGLKTSFDSPFIDDFSRSLETSKTNMKKVVNSGIQLVDKDILEKIVLANRIKIK LKNKLDLVEILKRFKKNQPNTCRYVWKRNSKDILFGASPEKLFSFSKPNLTLEALAGTISTNSNFEKLLTSTKDLKEHNY VIQHLIKSLEVSKITNFKKSDIKVNSFGDISHLQTLIFSKVENICPFELLKNLHPSPAVCGYPKNAALDWINTLESFPRG NYASPMGWVDSSGNASFLLAIRGARCIEENIEFTAGSGLVSGSVLEKEIDEIKLKFESIVKQIFCAKNPR
Specific function: Involved in the conversion of chorismate to salicylate (Probable) [H]
COG id: COG1169
COG function: function code HQ; Isochorismate synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the isochorismate synthase family [H]
Homologues:
Organism=Escherichia coli, GI1786809, Length=262, Percent_Identity=27.4809160305344, Blast_Score=94, Evalue=3e-20, Organism=Escherichia coli, GI87082077, Length=467, Percent_Identity=20.5567451820128, Blast_Score=83, Evalue=4e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005801 - InterPro: IPR015890 - InterPro: IPR004561 [H]
Pfam domain/function: PF00425 Chorismate_bind [H]
EC number: =5.4.4.2 [H]
Molecular weight: Translated: 53165; Mature: 53165
Theoretical pI: Translated: 8.87; Mature: 8.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNDLNLTDFLKDVFSSFDKKVENSGLVSICVEIPCIDLFQVYALLINQYPFSSFWEESD CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCHHHHCCCC GISYIAFEKCKYVTLDGPKRFEVAKEFNSENFKNLINLTNESHNSALSKIIYLFSFSENL CCEEEEECCEEEEECCCCHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC NNKNLPSDIPSLEAILPKILITKSGKNCWLRINGHVEGKSSLRTLIEEIWTIRNQVFNSG CCCCCCCCCCHHHHHHHHHHEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCH SELIKSSGLKTSFDSPFIDDFSRSLETSKTNMKKVVNSGIQLVDKDILEKIVLANRIKIK HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE LKNKLDLVEILKRFKKNQPNTCRYVWKRNSKDILFGASPEKLFSFSKPNLTLEALAGTIS ECCCCCHHHHHHHHHCCCCCHHHHHEECCCCCEEECCCHHHHHCCCCCCEEHHHHHHHCC TNSNFEKLLTSTKDLKEHNYVIQHLIKSLEVSKITNFKKSDIKVNSFGDISHLQTLIFSK CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHH VENICPFELLKNLHPSPAVCGYPKNAALDWINTLESFPRGNYASPMGWVDSSGNASFLLA HHCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEE IRGARCIEENIEFTAGSGLVSGSVLEKEIDEIKLKFESIVKQIFCAKNPR ECCCHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MKNDLNLTDFLKDVFSSFDKKVENSGLVSICVEIPCIDLFQVYALLINQYPFSSFWEESD CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCHHHHCCCC GISYIAFEKCKYVTLDGPKRFEVAKEFNSENFKNLINLTNESHNSALSKIIYLFSFSENL CCEEEEECCEEEEECCCCHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC NNKNLPSDIPSLEAILPKILITKSGKNCWLRINGHVEGKSSLRTLIEEIWTIRNQVFNSG CCCCCCCCCCHHHHHHHHHHEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCH SELIKSSGLKTSFDSPFIDDFSRSLETSKTNMKKVVNSGIQLVDKDILEKIVLANRIKIK HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE LKNKLDLVEILKRFKKNQPNTCRYVWKRNSKDILFGASPEKLFSFSKPNLTLEALAGTIS ECCCCCHHHHHHHHHCCCCCHHHHHEECCCCCEEECCCHHHHHCCCCCCEEHHHHHHHCC TNSNFEKLLTSTKDLKEHNYVIQHLIKSLEVSKITNFKKSDIKVNSFGDISHLQTLIFSK CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHH VENICPFELLKNLHPSPAVCGYPKNAALDWINTLESFPRGNYASPMGWVDSSGNASFLLA HHCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEE IRGARCIEENIEFTAGSGLVSGSVLEKEIDEIKLKFESIVKQIFCAKNPR ECCCHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7500944; 10984043 [H]