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The map label for this gene is ydiF [H]

Identifier: 123967641

GI number: 123967641

Start: 104410

End: 106035

Strand: Direct

Name: ydiF [H]

Synonym: A9601_01041

Alternate gene names: 123967641

Gene position: 104410-106035 (Clockwise)

Preceding gene: 123967638

Following gene: 123967642

Centisome position: 6.25

GC content: 29.03

Gene sequence:

>1626_bases
GTGATTAGATTTGAAGGTGTAAGCAAAATTTATTCTACAGATGTTGTTTTAAAAAATATTAGTTGGGAGATTAAGAAAGG
AGAAAAAGTTGGCTTAGTTGGTTCTAATGGTGCAGGTAAATCAACCCAATTTAAGATTTTAATTGGAGAGGAAGAGCAAA
CAAGTGGAACGATCATCAAAGAGGGAAATCCTAAAATTGCCCATTTAAAGCAAGAGTTTGATTGTAATTTGAATTTTTCA
GTGAGACAGGAATTAGAAAGTTCTTTTATAGATATACAAATTGTTGCCATTAAACTTTTAGAAATTGAGAATAAAATGAA
ATCGTTGGATATAAAAAAAAATTCCGATGAACTTGAAATACTTGTTAATCAACTCGCAAAATATCAAGCAAAATTTGAAG
CGTTAGGAGGTTATAAAATGCAATCTGATGTAGAAAAAATATTACCAAAATTAGGCTTTTCTTTAGCAGATGCTGATAAA
TTAGTTGGCAACTTCTCAGGTGGTTGGCAGATGAAAGTTGCTCTTGGAAAAATAATCTTACAAAAACCAGATTTACTTTT
ATTGGATGAACCAACCAATCATTTAGATTTAGAAACTATTTTTTGGTTGGAAGAATATCTATCATCGCTTAAAATTGCAG
TGATTATAATTAGCCATGATAGATATTTCTTAGATAAATTATGTAAAAAAATAATTTTTGTAGATAGAGGAATATCTGAA
ACATATAATGGGAACTATTCTTTTTTTGTCGAACAGAAATCTTTGAATGAAGAATCACAAAATAAAGCATATCAATTACA
ACAAAAAGAAATTGAGTTACAAAAGAGGTATATAGATAGATTTAGAGCTAGTGCAACAAGAAGTTCTCAAGCAAAGAGTA
GAGAAAAACAATTAAAAAAGATTACTAAAATTGAGGCTCCCATAGCAAAATCAAAAAGTCCTGTTTTTAATTTTCCAGAG
TGCCCTCGCTCTGGAAAATTAGTTCTAAATATTAAAAATTTGTCCCATAGTTTCGAGGATAAAATTCTTTTTCTAGATAT
TAATTTAAAGATTTCTTCTGGGGAGAAAATAGCAATATTGGGCCCTAATGGATGCGGCAAATCTACATTGCTTAAAATTA
TTATGAAAAAAATATCTCCTGAAATTGGAGAAATTAATCTTGGTAAACATAATATAATTACTAACTATTATGAACAGAAT
CAGGCTGAAGCGCTTTCACTTGATGAAACGGTTATTGATTTAATATGTAATAAGTCTCCAGAATGGTCCCAAAAAAAAGT
TAGAACATTTTTAGGGGGTTTTGGCTTTCAAAATGAAACTGTTTTTAAATATATTAAACAACTCAGTGGGGGAGAAAAGG
CAAGATTAGCATTGGCGCTCATGATTATTAATCCTAGTAATTTCCTTCTTTTGGACGAACCAACTAATCATTTGGATCTG
CAATCTAAGGAAAACTTAGAATTAGCAATTAAAAATTATAAAGGTTCATTATTAATCATTTCTCATGATCGGTATTTTAT
TTCAAAGGTTGCAAATAGAATTATTGAAATTAAAGATTCAAAGTTATATTCATATGACGGTAATTATGAATATTTTTTAG
AAAAAACTCAAAGCCAAAAAATTTGA

Upstream 100 bases:

>100_bases
TCACTACAATTTGTTCTATTCTTTTCATGATTTAATTTTATTCCACAAAATATTTTTTAGTAAATAAGCCACAGATTTTG
TAAATTCTATTTTTAAAACA

Downstream 100 bases:

>100_bases
TTACTTTTAATAAAATTTACACTTGGCTAAGTAAGATCACTCATTTATCTTTACATAGTTTATCGTCCTTGATTAATCTT
AAAAATACAGAATAGGTTTT

Product: ABC transporter, ATP binding component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 541; Mature: 541

Protein sequence:

>541_residues
MIRFEGVSKIYSTDVVLKNISWEIKKGEKVGLVGSNGAGKSTQFKILIGEEEQTSGTIIKEGNPKIAHLKQEFDCNLNFS
VRQELESSFIDIQIVAIKLLEIENKMKSLDIKKNSDELEILVNQLAKYQAKFEALGGYKMQSDVEKILPKLGFSLADADK
LVGNFSGGWQMKVALGKIILQKPDLLLLDEPTNHLDLETIFWLEEYLSSLKIAVIIISHDRYFLDKLCKKIIFVDRGISE
TYNGNYSFFVEQKSLNEESQNKAYQLQQKEIELQKRYIDRFRASATRSSQAKSREKQLKKITKIEAPIAKSKSPVFNFPE
CPRSGKLVLNIKNLSHSFEDKILFLDINLKISSGEKIAILGPNGCGKSTLLKIIMKKISPEIGEINLGKHNIITNYYEQN
QAEALSLDETVIDLICNKSPEWSQKKVRTFLGGFGFQNETVFKYIKQLSGGEKARLALALMIINPSNFLLLDEPTNHLDL
QSKENLELAIKNYKGSLLIISHDRYFISKVANRIIEIKDSKLYSYDGNYEYFLEKTQSQKI

Sequences:

>Translated_541_residues
MIRFEGVSKIYSTDVVLKNISWEIKKGEKVGLVGSNGAGKSTQFKILIGEEEQTSGTIIKEGNPKIAHLKQEFDCNLNFS
VRQELESSFIDIQIVAIKLLEIENKMKSLDIKKNSDELEILVNQLAKYQAKFEALGGYKMQSDVEKILPKLGFSLADADK
LVGNFSGGWQMKVALGKIILQKPDLLLLDEPTNHLDLETIFWLEEYLSSLKIAVIIISHDRYFLDKLCKKIIFVDRGISE
TYNGNYSFFVEQKSLNEESQNKAYQLQQKEIELQKRYIDRFRASATRSSQAKSREKQLKKITKIEAPIAKSKSPVFNFPE
CPRSGKLVLNIKNLSHSFEDKILFLDINLKISSGEKIAILGPNGCGKSTLLKIIMKKISPEIGEINLGKHNIITNYYEQN
QAEALSLDETVIDLICNKSPEWSQKKVRTFLGGFGFQNETVFKYIKQLSGGEKARLALALMIINPSNFLLLDEPTNHLDL
QSKENLELAIKNYKGSLLIISHDRYFISKVANRIIEIKDSKLYSYDGNYEYFLEKTQSQKI
>Mature_541_residues
MIRFEGVSKIYSTDVVLKNISWEIKKGEKVGLVGSNGAGKSTQFKILIGEEEQTSGTIIKEGNPKIAHLKQEFDCNLNFS
VRQELESSFIDIQIVAIKLLEIENKMKSLDIKKNSDELEILVNQLAKYQAKFEALGGYKMQSDVEKILPKLGFSLADADK
LVGNFSGGWQMKVALGKIILQKPDLLLLDEPTNHLDLETIFWLEEYLSSLKIAVIIISHDRYFLDKLCKKIIFVDRGISE
TYNGNYSFFVEQKSLNEESQNKAYQLQQKEIELQKRYIDRFRASATRSSQAKSREKQLKKITKIEAPIAKSKSPVFNFPE
CPRSGKLVLNIKNLSHSFEDKILFLDINLKISSGEKIAILGPNGCGKSTLLKIIMKKISPEIGEINLGKHNIITNYYEQN
QAEALSLDETVIDLICNKSPEWSQKKVRTFLGGFGFQNETVFKYIKQLSGGEKARLALALMIINPSNFLLLDEPTNHLDL
QSKENLELAIKNYKGSLLIISHDRYFISKVANRIIEIKDSKLYSYDGNYEYFLEKTQSQKI

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=540, Percent_Identity=30.3703703703704, Blast_Score=275, Evalue=9e-74,
Organism=Homo sapiens, GI10947137, Length=532, Percent_Identity=30.8270676691729, Blast_Score=242, Evalue=5e-64,
Organism=Homo sapiens, GI27881506, Length=532, Percent_Identity=30.8270676691729, Blast_Score=242, Evalue=6e-64,
Organism=Homo sapiens, GI10947135, Length=537, Percent_Identity=29.9813780260708, Blast_Score=203, Evalue=4e-52,
Organism=Homo sapiens, GI69354671, Length=537, Percent_Identity=29.9813780260708, Blast_Score=202, Evalue=5e-52,
Organism=Homo sapiens, GI9961252, Length=196, Percent_Identity=26.530612244898, Blast_Score=71, Evalue=3e-12,
Organism=Homo sapiens, GI9961250, Length=196, Percent_Identity=26.530612244898, Blast_Score=71, Evalue=3e-12,
Organism=Homo sapiens, GI4505771, Length=196, Percent_Identity=26.530612244898, Blast_Score=70, Evalue=3e-12,
Organism=Escherichia coli, GI1789751, Length=547, Percent_Identity=35.6489945155393, Blast_Score=338, Evalue=4e-94,
Organism=Escherichia coli, GI1787041, Length=545, Percent_Identity=32.2935779816514, Blast_Score=298, Evalue=5e-82,
Organism=Escherichia coli, GI2367384, Length=531, Percent_Identity=33.7099811676083, Blast_Score=286, Evalue=3e-78,
Organism=Escherichia coli, GI1787182, Length=546, Percent_Identity=33.5164835164835, Blast_Score=269, Evalue=3e-73,
Organism=Escherichia coli, GI1790190, Length=556, Percent_Identity=22.1223021582734, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1789672, Length=261, Percent_Identity=27.9693486590038, Blast_Score=91, Evalue=3e-19,
Organism=Escherichia coli, GI1788506, Length=233, Percent_Identity=29.6137339055794, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1787029, Length=253, Percent_Identity=30.4347826086957, Blast_Score=89, Evalue=8e-19,
Organism=Escherichia coli, GI48995001, Length=558, Percent_Identity=24.0143369175627, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788225, Length=237, Percent_Identity=25.7383966244726, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1789891, Length=236, Percent_Identity=26.271186440678, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1787089, Length=257, Percent_Identity=26.8482490272374, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI1788472, Length=226, Percent_Identity=26.9911504424779, Blast_Score=76, Evalue=7e-15,
Organism=Escherichia coli, GI1786698, Length=220, Percent_Identity=30.4545454545455, Blast_Score=76, Evalue=7e-15,
Organism=Escherichia coli, GI87081791, Length=203, Percent_Identity=30.5418719211823, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1786703, Length=209, Percent_Identity=27.2727272727273, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1787370, Length=218, Percent_Identity=27.0642201834862, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1788165, Length=189, Percent_Identity=29.6296296296296, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1787112, Length=251, Percent_Identity=26.2948207171315, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI87081709, Length=207, Percent_Identity=26.0869565217391, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1786253, Length=197, Percent_Identity=26.9035532994924, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1787758, Length=182, Percent_Identity=28.5714285714286, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1789873, Length=202, Percent_Identity=27.2277227722772, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI1787164, Length=203, Percent_Identity=26.1083743842365, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1786872, Length=260, Percent_Identity=28.8461538461538, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1789962, Length=227, Percent_Identity=23.7885462555066, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI87081834, Length=225, Percent_Identity=25.3333333333333, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI48994997, Length=224, Percent_Identity=22.7678571428571, Blast_Score=63, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17553372, Length=551, Percent_Identity=30.8529945553539, Blast_Score=258, Evalue=5e-69,
Organism=Caenorhabditis elegans, GI17555318, Length=550, Percent_Identity=30.3636363636364, Blast_Score=248, Evalue=7e-66,
Organism=Caenorhabditis elegans, GI17559834, Length=540, Percent_Identity=30.1851851851852, Blast_Score=246, Evalue=3e-65,
Organism=Caenorhabditis elegans, GI71996809, Length=220, Percent_Identity=27.2727272727273, Blast_Score=71, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI193211017, Length=220, Percent_Identity=27.2727272727273, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193211015, Length=220, Percent_Identity=27.2727272727273, Blast_Score=70, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI115533592, Length=216, Percent_Identity=29.6296296296296, Blast_Score=67, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI193209708, Length=220, Percent_Identity=29.0909090909091, Blast_Score=66, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6321121, Length=530, Percent_Identity=31.5094339622642, Blast_Score=270, Evalue=4e-73,
Organism=Saccharomyces cerevisiae, GI6320874, Length=540, Percent_Identity=30.7407407407407, Blast_Score=244, Evalue=2e-65,
Organism=Saccharomyces cerevisiae, GI6325030, Length=392, Percent_Identity=28.3163265306122, Blast_Score=136, Evalue=9e-33,
Organism=Saccharomyces cerevisiae, GI6324314, Length=375, Percent_Identity=25.6, Blast_Score=129, Evalue=1e-30,
Organism=Saccharomyces cerevisiae, GI6323278, Length=379, Percent_Identity=25.5936675461741, Blast_Score=122, Evalue=1e-28,
Organism=Saccharomyces cerevisiae, GI6323217, Length=218, Percent_Identity=30.7339449541284, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24666836, Length=537, Percent_Identity=32.7746741154562, Blast_Score=278, Evalue=7e-75,
Organism=Drosophila melanogaster, GI24642252, Length=518, Percent_Identity=32.046332046332, Blast_Score=258, Evalue=8e-69,
Organism=Drosophila melanogaster, GI18859989, Length=518, Percent_Identity=32.046332046332, Blast_Score=258, Evalue=8e-69,
Organism=Drosophila melanogaster, GI24641342, Length=539, Percent_Identity=30.7977736549165, Blast_Score=251, Evalue=7e-67,
Organism=Drosophila melanogaster, GI24659289, Length=205, Percent_Identity=30.2439024390244, Blast_Score=80, Evalue=4e-15,
Organism=Drosophila melanogaster, GI17136662, Length=201, Percent_Identity=29.3532338308458, Blast_Score=74, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 61552; Mature: 61552

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRFEGVSKIYSTDVVLKNISWEIKKGEKVGLVGSNGAGKSTQFKILIGEEEQTSGTIIK
CEEECCCHHHHHHHEEEECCEEEEECCCEEEEEECCCCCCCEEEEEEECCCCCCCCCEEE
EGNPKIAHLKQEFDCNLNFSVRQELESSFIDIQIVAIKLLEIENKMKSLDIKKNSDELEI
CCCCCEEEEHHHCCCCCCHHHHHHHHHCCEEEEEEEEEEHHHHHHHHHCCCCCCCHHHHH
LVNQLAKYQAKFEALGGYKMQSDVEKILPKLGFSLADADKLVGNFSGGWQMKVALGKIIL
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHCCCCCCEEEEEEHHHHHC
QKPDLLLLDEPTNHLDLETIFWLEEYLSSLKIAVIIISHDRYFLDKLCKKIIFVDRGISE
CCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHHHHCCCCCC
TYNGNYSFFVEQKSLNEESQNKAYQLQQKEIELQKRYIDRFRASATRSSQAKSREKQLKK
CCCCCEEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
ITKIEAPIAKSKSPVFNFPECPRSGKLVLNIKNLSHSFEDKILFLDINLKISSGEKIAIL
HHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEEEEECCCCEEEEE
GPNGCGKSTLLKIIMKKISPEIGEINLGKHNIITNYYEQNQAEALSLDETVIDLICNKSP
CCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCEEHHHHCCCHHHEEHHHHHHHHHHCCCC
EWSQKKVRTFLGGFGFQNETVFKYIKQLSGGEKARLALALMIINPSNFLLLDEPTNHLDL
CHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEECCCCCCCCC
QSKENLELAIKNYKGSLLIISHDRYFISKVANRIIEIKDSKLYSYDGNYEYFLEKTQSQK
CCCCCCEEEEEECCCCEEEEECCHHHHHHHHHHHEEEECCEEEEECCCEEEEEECCCCCC
I
C
>Mature Secondary Structure
MIRFEGVSKIYSTDVVLKNISWEIKKGEKVGLVGSNGAGKSTQFKILIGEEEQTSGTIIK
CEEECCCHHHHHHHEEEECCEEEEECCCEEEEEECCCCCCCEEEEEEECCCCCCCCCEEE
EGNPKIAHLKQEFDCNLNFSVRQELESSFIDIQIVAIKLLEIENKMKSLDIKKNSDELEI
CCCCCEEEEHHHCCCCCCHHHHHHHHHCCEEEEEEEEEEHHHHHHHHHCCCCCCCHHHHH
LVNQLAKYQAKFEALGGYKMQSDVEKILPKLGFSLADADKLVGNFSGGWQMKVALGKIIL
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHCCCCCCEEEEEEHHHHHC
QKPDLLLLDEPTNHLDLETIFWLEEYLSSLKIAVIIISHDRYFLDKLCKKIIFVDRGISE
CCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHHHHCCCCCC
TYNGNYSFFVEQKSLNEESQNKAYQLQQKEIELQKRYIDRFRASATRSSQAKSREKQLKK
CCCCCEEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
ITKIEAPIAKSKSPVFNFPECPRSGKLVLNIKNLSHSFEDKILFLDINLKISSGEKIAIL
HHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEEEEECCCCEEEEE
GPNGCGKSTLLKIIMKKISPEIGEINLGKHNIITNYYEQNQAEALSLDETVIDLICNKSP
CCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCEEHHHHCCCHHHEEHHHHHHHHHHCCCC
EWSQKKVRTFLGGFGFQNETVFKYIKQLSGGEKARLALALMIINPSNFLLLDEPTNHLDL
CHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEECCCCCCCCC
QSKENLELAIKNYKGSLLIISHDRYFISKVANRIIEIKDSKLYSYDGNYEYFLEKTQSQK
CCCCCCEEEEEECCCCEEEEECCHHHHHHHHHHHEEEECCEEEEECCCEEEEEECCCCCC
I
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]