| Definition | Prochlorococcus marinus str. AS9601, complete genome. |
|---|---|
| Accession | NC_008816 |
| Length | 1,669,886 |
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The map label for this gene is dap2
Identifier: 123967618
GI number: 123967618
Start: 83680
End: 85605
Strand: Direct
Name: dap2
Synonym: A9601_00811
Alternate gene names: NA
Gene position: 83680-85605 (Clockwise)
Preceding gene: 123967612
Following gene: 123967623
Centisome position: 5.01
GC content: 27.47
Gene sequence:
>1926_bases ATGAGTAATGATGATCAGTTAAAAGTTAGGCAAACTGTATCTAAAAAGAAATCTTTTAAAGAATTAACTATTATTAGGGA TATCATTTTTTGGATTGATCTTGTTGGTGAAGGTCAAAATGAAAATGCCATTTTTGCAAGACCATTTAATAAAAAAGAGG CGTTTCCTCAGAAATTAACAAGTAAAAAATATAATATTAAAAATAACTTTCATGGATATGGTGGTAAATCTTATAAATGT ATATATTTAAAAAATAATTTTTATTTGATATGGATTGATCAGATTACCAACGCAGTTTGGTTTCAAATTTTTAAAGAGGT TGCATCAAATTATAGAAGTCAAAAAAGATATCTCGATTCAGTTCAAGAACCAAGACAACTATCTAAATCAATTGATGGAA ATTTTGATTCTTCGTTTGTTATTTCTCAAAAAAATTTTTTATATGGTATTTGTGAAATAAATAATAGAGATTACTTATTT TCTTTAAACCTAAAAAAAACTAAACAAGATATTTACCGAATAAAAAAATTTAAAAATTTCGCTGGAGAATTATCTTGTAA TTCTTCTGTTAGCTTACTTTCTTGGGTCGAGTGGGGTTCTCCATATATGCCTTGGGAGAAAAATGATCTTTTTTTTGCTC AAATTGACTTAGATGGAGAGATAACAAAAATAAAAAAATTCTCAGATAAGCTGATTAATGCCAAAAAAAACGTTTCTTTT TTTCATCCTTATTGGATAAGTGAAACTCTTTTAGTATGTTCTGAAGATAGTTCTGGATGGTGGAACTTATTGTTTTTAGA TGCTAGTAAAATTGAGAATATTTTTATTAAAAAAAGAGTAGAGAGAAATTTTGTTGAATATGGAGTACCTCAGTGGGTCT CAGGAATAACATTTTTTTCAGGGGATATAAAAGATTTATTTTGTTTAGCAAAAAAAGAAAATAATTTAGTAGTTGAACAA TATAAAGATCTTCAATGCGTTAAAGAATTTTCTACTCCTTTTACCTCAATAAGTGATTTCAGTGTTTTTGAGAAGAAAGT AGTTTTGAAAGGTCATGGATCTGATTTTCTTGGAAATTTACTTGAAATTGATTTTAAAAAGGAAGTTTTATCAAATGTTT TTGAGGAAATAAATGCTGAATATATAAAAGTTTGTTCAAAACCTGAAACATTTTGGTTTAAAGGTTTTGAAGCTCAATCT ACTCATTCTTTTCTTTATAGGCCGCTCGTAGAAAATTTTAGAAAGCCACCGCTCCTTGTTAGAGCACATAGCGGACCAAC TTCATGTTTTGATGGATCATATAATTCTGAGGTTCAATATTGGACTTCGAAGGGATTTTTTGTTGCTGAAGTTAATTATG GAGGATCATCAGGATTTGGCAAAGCATATATAGAGAGGTTGAATTGTAAATGGGGTATTGTTGATTCTTATGATTGCAAA GCACTAGCTCTTGAATTGATTAAATCAAATCAAGTTGATAGTGAAAAAGTAGTAATTTTTGGGAATAGTGCTGGTGGGTT AACTGCCCTGAATTGTTTATTATATGGGTCTATTTTTACAGCAGCAATTTGTAAATATCCTGTTATTGATTTGAAGGATA TGCATTACAACACTCATAGGTTTGAAAAAGATTATTTAAATTCTTTGGTAGGAATTTATGCACAAAATCATGATGATTAT ATAAATAGATCACCGATAAATCATATTAACAAAATAAAAAAACCTATCTTATTGTTTCATGGAAAAAAAGATAAAGTAAT TTCTTATAAACAAACTTTTAAAATCCAGGAAATTTTGATTCAGAATAATAAATATTCAGAAGTTATTTTTTTTGATAATG AGGGGCACGGTTTTAGAAATATTGAAAATAAAGAAATAGTAATGCAAAAATCTATGGAATTTTTAAAAAATGCTTTGAAT ATTTAA
Upstream 100 bases:
>100_bases GTGAAAAATGGTTTGCCACGTTAAAAAAAAAGGTTTTTACTTAAGAGTTTAGCTATAAAAATACTAGCACTTTAATTTGC ATTCTTTATAGTTTTTTTAA
Downstream 100 bases:
>100_bases GAATTGATTTTTAGAAAATCAATAGTATCTTTTAATTTTTCAAGAAATATATCAATTTCCTCCTTATTGGTTGTGAAATT CATACTGATTCTAGCTGTTG
Product: esterase/lipase/thioesterase family protein
Products: NA
Alternate protein names: AARE; Acyl-peptide hydrolase; APH; Acylaminoacyl-peptidase [H]
Number of amino acids: Translated: 641; Mature: 640
Protein sequence:
>641_residues MSNDDQLKVRQTVSKKKSFKELTIIRDIIFWIDLVGEGQNENAIFARPFNKKEAFPQKLTSKKYNIKNNFHGYGGKSYKC IYLKNNFYLIWIDQITNAVWFQIFKEVASNYRSQKRYLDSVQEPRQLSKSIDGNFDSSFVISQKNFLYGICEINNRDYLF SLNLKKTKQDIYRIKKFKNFAGELSCNSSVSLLSWVEWGSPYMPWEKNDLFFAQIDLDGEITKIKKFSDKLINAKKNVSF FHPYWISETLLVCSEDSSGWWNLLFLDASKIENIFIKKRVERNFVEYGVPQWVSGITFFSGDIKDLFCLAKKENNLVVEQ YKDLQCVKEFSTPFTSISDFSVFEKKVVLKGHGSDFLGNLLEIDFKKEVLSNVFEEINAEYIKVCSKPETFWFKGFEAQS THSFLYRPLVENFRKPPLLVRAHSGPTSCFDGSYNSEVQYWTSKGFFVAEVNYGGSSGFGKAYIERLNCKWGIVDSYDCK ALALELIKSNQVDSEKVVIFGNSAGGLTALNCLLYGSIFTAAICKYPVIDLKDMHYNTHRFEKDYLNSLVGIYAQNHDDY INRSPINHINKIKKPILLFHGKKDKVISYKQTFKIQEILIQNNKYSEVIFFDNEGHGFRNIENKEIVMQKSMEFLKNALN I
Sequences:
>Translated_641_residues MSNDDQLKVRQTVSKKKSFKELTIIRDIIFWIDLVGEGQNENAIFARPFNKKEAFPQKLTSKKYNIKNNFHGYGGKSYKC IYLKNNFYLIWIDQITNAVWFQIFKEVASNYRSQKRYLDSVQEPRQLSKSIDGNFDSSFVISQKNFLYGICEINNRDYLF SLNLKKTKQDIYRIKKFKNFAGELSCNSSVSLLSWVEWGSPYMPWEKNDLFFAQIDLDGEITKIKKFSDKLINAKKNVSF FHPYWISETLLVCSEDSSGWWNLLFLDASKIENIFIKKRVERNFVEYGVPQWVSGITFFSGDIKDLFCLAKKENNLVVEQ YKDLQCVKEFSTPFTSISDFSVFEKKVVLKGHGSDFLGNLLEIDFKKEVLSNVFEEINAEYIKVCSKPETFWFKGFEAQS THSFLYRPLVENFRKPPLLVRAHSGPTSCFDGSYNSEVQYWTSKGFFVAEVNYGGSSGFGKAYIERLNCKWGIVDSYDCK ALALELIKSNQVDSEKVVIFGNSAGGLTALNCLLYGSIFTAAICKYPVIDLKDMHYNTHRFEKDYLNSLVGIYAQNHDDY INRSPINHINKIKKPILLFHGKKDKVISYKQTFKIQEILIQNNKYSEVIFFDNEGHGFRNIENKEIVMQKSMEFLKNALN I >Mature_640_residues SNDDQLKVRQTVSKKKSFKELTIIRDIIFWIDLVGEGQNENAIFARPFNKKEAFPQKLTSKKYNIKNNFHGYGGKSYKCI YLKNNFYLIWIDQITNAVWFQIFKEVASNYRSQKRYLDSVQEPRQLSKSIDGNFDSSFVISQKNFLYGICEINNRDYLFS LNLKKTKQDIYRIKKFKNFAGELSCNSSVSLLSWVEWGSPYMPWEKNDLFFAQIDLDGEITKIKKFSDKLINAKKNVSFF HPYWISETLLVCSEDSSGWWNLLFLDASKIENIFIKKRVERNFVEYGVPQWVSGITFFSGDIKDLFCLAKKENNLVVEQY KDLQCVKEFSTPFTSISDFSVFEKKVVLKGHGSDFLGNLLEIDFKKEVLSNVFEEINAEYIKVCSKPETFWFKGFEAQST HSFLYRPLVENFRKPPLLVRAHSGPTSCFDGSYNSEVQYWTSKGFFVAEVNYGGSSGFGKAYIERLNCKWGIVDSYDCKA LALELIKSNQVDSEKVVIFGNSAGGLTALNCLLYGSIFTAAICKYPVIDLKDMHYNTHRFEKDYLNSLVGIYAQNHDDYI NRSPINHINKIKKPILLFHGKKDKVISYKQTFKIQEILIQNNKYSEVIFFDNEGHGFRNIENKEIVMQKSMEFLKNALNI
Specific function: This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N- acetylated amino acid and a peptide with a free N-terminus [H]
COG id: COG1506
COG function: function code E; Dipeptidyl aminopeptidases/acylaminoacyl-peptidases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S9C family [H]
Homologues:
Organism=Homo sapiens, GI23510451, Length=238, Percent_Identity=25.6302521008403, Blast_Score=88, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17552908, Length=466, Percent_Identity=29.6137339055794, Blast_Score=181, Evalue=1e-45, Organism=Caenorhabditis elegans, GI25149159, Length=189, Percent_Identity=28.042328042328, Blast_Score=74, Evalue=3e-13, Organism=Drosophila melanogaster, GI45550825, Length=262, Percent_Identity=26.3358778625954, Blast_Score=70, Evalue=4e-12, Organism=Drosophila melanogaster, GI45553511, Length=262, Percent_Identity=26.3358778625954, Blast_Score=70, Evalue=4e-12, Organism=Drosophila melanogaster, GI45551969, Length=265, Percent_Identity=26.0377358490566, Blast_Score=70, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011042 - InterPro: IPR001375 - InterPro: IPR004106 [H]
Pfam domain/function: PF00326 Peptidase_S9 [H]
EC number: =3.4.19.1 [H]
Molecular weight: Translated: 74466; Mature: 74335
Theoretical pI: Translated: 9.00; Mature: 9.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNDDQLKVRQTVSKKKSFKELTIIRDIIFWIDLVGEGQNENAIFARPFNKKEAFPQKLT CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHC SKKYNIKNNFHGYGGKSYKCIYLKNNFYLIWIDQITNAVWFQIFKEVASNYRSQKRYLDS CCCCCCCCCCCCCCCCEEEEEEEECCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VQEPRQLSKSIDGNFDSSFVISQKNFLYGICEINNRDYLFSLNLKKTKQDIYRIKKFKNF HHHHHHHHHHCCCCCCCEEEEECCCEEEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHH AGELSCNSSVSLLSWVEWGSPYMPWEKNDLFFAQIDLDGEITKIKKFSDKLINAKKNVSF CCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCE FHPYWISETLLVCSEDSSGWWNLLFLDASKIENIFIKKRVERNFVEYGVPQWVSGITFFS ECCCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHCCCEEEC GDIKDLFCLAKKENNLVVEQYKDLQCVKEFSTPFTSISDFSVFEKKVVLKGHGSDFLGNL CCHHHHHEEECCCCCEEHHHHHHHHHHHHHCCCCCCCCCHHHHHEEEEEEECCCHHHHHH LEIDFKKEVLSNVFEEINAEYIKVCSKPETFWFKGFEAQSTHSFLYRPLVENFRKPPLLV HHHHHHHHHHHHHHHHHCHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEE RAHSGPTSCFDGSYNSEVQYWTSKGFFVAEVNYGGSSGFGKAYIERLNCKWGIVDSYDCK EECCCCCCCCCCCCCCCEEEEECCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCHH ALALELIKSNQVDSEKVVIFGNSAGGLTALNCLLYGSIFTAAICKYPVIDLKDMHYNTHR HHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH FEKDYLNSLVGIYAQNHDDYINRSPINHINKIKKPILLFHGKKDKVISYKQTFKIQEILI HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCEEEEECCCCCEEEHHHHHHHHHHHH QNNKYSEVIFFDNEGHGFRNIENKEIVMQKSMEFLKNALNI CCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SNDDQLKVRQTVSKKKSFKELTIIRDIIFWIDLVGEGQNENAIFARPFNKKEAFPQKLT CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHC SKKYNIKNNFHGYGGKSYKCIYLKNNFYLIWIDQITNAVWFQIFKEVASNYRSQKRYLDS CCCCCCCCCCCCCCCCEEEEEEEECCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VQEPRQLSKSIDGNFDSSFVISQKNFLYGICEINNRDYLFSLNLKKTKQDIYRIKKFKNF HHHHHHHHHHCCCCCCCEEEEECCCEEEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHH AGELSCNSSVSLLSWVEWGSPYMPWEKNDLFFAQIDLDGEITKIKKFSDKLINAKKNVSF CCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCE FHPYWISETLLVCSEDSSGWWNLLFLDASKIENIFIKKRVERNFVEYGVPQWVSGITFFS ECCCCCCCEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHCCCEEEC GDIKDLFCLAKKENNLVVEQYKDLQCVKEFSTPFTSISDFSVFEKKVVLKGHGSDFLGNL CCHHHHHEEECCCCCEEHHHHHHHHHHHHHCCCCCCCCCHHHHHEEEEEEECCCHHHHHH LEIDFKKEVLSNVFEEINAEYIKVCSKPETFWFKGFEAQSTHSFLYRPLVENFRKPPLLV HHHHHHHHHHHHHHHHHCHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEE RAHSGPTSCFDGSYNSEVQYWTSKGFFVAEVNYGGSSGFGKAYIERLNCKWGIVDSYDCK EECCCCCCCCCCCCCCCEEEEECCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCHH ALALELIKSNQVDSEKVVIFGNSAGGLTALNCLLYGSIFTAAICKYPVIDLKDMHYNTHR HHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH FEKDYLNSLVGIYAQNHDDYINRSPINHINKIKKPILLFHGKKDKVISYKQTFKIQEILI HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCEEEEECCCCCEEEHHHHHHHHHHHH QNNKYSEVIFFDNEGHGFRNIENKEIVMQKSMEFLKNALNI CCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10382966; 12037315 [H]