| Definition | Prochlorococcus marinus str. AS9601, complete genome. |
|---|---|
| Accession | NC_008816 |
| Length | 1,669,886 |
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The map label for this gene is rsbU [H]
Identifier: 123967547
GI number: 123967547
Start: 13122
End: 14465
Strand: Direct
Name: rsbU [H]
Synonym: A9601_00101
Alternate gene names: 123967547
Gene position: 13122-14465 (Clockwise)
Preceding gene: 123967546
Following gene: 123967548
Centisome position: 0.79
GC content: 27.16
Gene sequence:
>1344_bases TTGACAAACTATCAAAAAGAAAAAATATTTTCGAACAAATTTATTAAAAATTTTTTAGAAAACGAATCTACAGAAATTTT AAAAAATAAATATAAATTTGCTGAAATTGCATCTTCACTAGCATATTATTTAAAATCGTTTTCCAACATAAATAAATTAT TAGATTATATTTCTTTAATTTTTAAACATATTTTTTCTGAGAATATAATTTTAATTATTCCTTTAAATTATGAGGGTGAT ATATGGAATGAAAATATAAAAATTTCTGTTAATGATAAATATTTAACAATTCAAAAAGAAATCAATAAATTTTTGAATCA ATTTCATTTTTCAAAAAATTTTAAAATAAAAGAAATTTTAACTTTTGAAAATGCTTTAAAAAATAATTTTAAAGAATATA AAATTGAAACAAAAAAAATAATATCTAGAGGTAAATGTAGAGGATTTATTTATATTTTTAGCAAAGATATTTATATACAG TCGATTACTGAAGATAGTAATTTTAATTTTATTGAAAATTGTCTAGCTGTTGGATTAGAAAATCACTATTTATTAAAAAC AAAGAAAAAGCATGAAAACGTAGATAGAGAAATCTCCACTGGTGCTGAAATTCAATCTCAATTACTTCCGGATTATTGCC CAATTATCCATGGTATAGATTTAGCAGCTCATTGTAGACCAGCTCTTCAGCTCGGAGGGGATTACTATGATTTTATGTGC TTGAAGACGAATATCTCTGAAAAAAGAAAAGAAAAATCAAGATGGGCTTTTGTTATAGGTGATGTCATGGGTAAAGGGAT TCCGGCTGGCCTTTTAATGACGATGTTGAGAGGAATGCTACGCGCTGAGGTTCTTACAGGTCTGCCTCCAGATAGAATTT TGCATGATTTGAATCAACTAGCAATAAATGATTTAGATCAATCACATAGATTTGTGACTTTATTTTACTCAGATTATGAC CCTAGAACTAGAAAATTGAGATTCGCTAATGCAGCACATAATCCTCCTCTGCTTTGGAAAAGTTCAGATCAGAAAATTAT TAAATTAGATGCAGAAGGATTTGTACTTGGACTACAAAAAGATGCAGAATACCAATGTGGTGAAATAAAGCTTAATCAAA ATGATTTAGTTCTCTATTACACAGATGGAGTAATAGATACTTCTAATTCCTTAGGGCAAAGATTTGACGAGGAAAGGTTA ATTAAAACGCTTACAAAATTTTGCAAGCAATCATATTCATCCCAAGAAATTTTAAATAAAATATTTAAAAAGTTAGATGA TTTTACTGGACAAAATAGACACTTGGAAGATGACGCCTCGATGGTTATTTTTCAATTGAAATAG
Upstream 100 bases:
>100_bases GAATTTGTAGAGGCTATGCTCGCAGATAAATAAATATTTAATTAATTTTTTTAAAAAATTAAAATTTAATGTTAAAACAT ATTTATCTATTAGATTTGTT
Downstream 100 bases:
>100_bases ATATTTTTGTCACACACATAAAAAAATGCTTTATTAGAGATACTTAAAGTTAATTATTGATATGGCAAAAGTTTGGAGTA AAAGGTTTGATAATGCACTT
Product: protein phosphatase 2C domain-containing protein
Products: NA
Alternate protein names: Sigma factor sigB regulation protein rsbU [H]
Number of amino acids: Translated: 447; Mature: 446
Protein sequence:
>447_residues MTNYQKEKIFSNKFIKNFLENESTEILKNKYKFAEIASSLAYYLKSFSNINKLLDYISLIFKHIFSENIILIIPLNYEGD IWNENIKISVNDKYLTIQKEINKFLNQFHFSKNFKIKEILTFENALKNNFKEYKIETKKIISRGKCRGFIYIFSKDIYIQ SITEDSNFNFIENCLAVGLENHYLLKTKKKHENVDREISTGAEIQSQLLPDYCPIIHGIDLAAHCRPALQLGGDYYDFMC LKTNISEKRKEKSRWAFVIGDVMGKGIPAGLLMTMLRGMLRAEVLTGLPPDRILHDLNQLAINDLDQSHRFVTLFYSDYD PRTRKLRFANAAHNPPLLWKSSDQKIIKLDAEGFVLGLQKDAEYQCGEIKLNQNDLVLYYTDGVIDTSNSLGQRFDEERL IKTLTKFCKQSYSSQEILNKIFKKLDDFTGQNRHLEDDASMVIFQLK
Sequences:
>Translated_447_residues MTNYQKEKIFSNKFIKNFLENESTEILKNKYKFAEIASSLAYYLKSFSNINKLLDYISLIFKHIFSENIILIIPLNYEGD IWNENIKISVNDKYLTIQKEINKFLNQFHFSKNFKIKEILTFENALKNNFKEYKIETKKIISRGKCRGFIYIFSKDIYIQ SITEDSNFNFIENCLAVGLENHYLLKTKKKHENVDREISTGAEIQSQLLPDYCPIIHGIDLAAHCRPALQLGGDYYDFMC LKTNISEKRKEKSRWAFVIGDVMGKGIPAGLLMTMLRGMLRAEVLTGLPPDRILHDLNQLAINDLDQSHRFVTLFYSDYD PRTRKLRFANAAHNPPLLWKSSDQKIIKLDAEGFVLGLQKDAEYQCGEIKLNQNDLVLYYTDGVIDTSNSLGQRFDEERL IKTLTKFCKQSYSSQEILNKIFKKLDDFTGQNRHLEDDASMVIFQLK >Mature_446_residues TNYQKEKIFSNKFIKNFLENESTEILKNKYKFAEIASSLAYYLKSFSNINKLLDYISLIFKHIFSENIILIIPLNYEGDI WNENIKISVNDKYLTIQKEINKFLNQFHFSKNFKIKEILTFENALKNNFKEYKIETKKIISRGKCRGFIYIFSKDIYIQS ITEDSNFNFIENCLAVGLENHYLLKTKKKHENVDREISTGAEIQSQLLPDYCPIIHGIDLAAHCRPALQLGGDYYDFMCL KTNISEKRKEKSRWAFVIGDVMGKGIPAGLLMTMLRGMLRAEVLTGLPPDRILHDLNQLAINDLDQSHRFVTLFYSDYDP RTRKLRFANAAHNPPLLWKSSDQKIIKLDAEGFVLGLQKDAEYQCGEIKLNQNDLVLYYTDGVIDTSNSLGQRFDEERLI KTLTKFCKQSYSSQEILNKIFKKLDDFTGQNRHLEDDASMVIFQLK
Specific function: Positive regulator of sigma-B activity. Dephosphorylates rsbV in response to environmental stress conveyed from the rsbXST module [H]
COG id: COG2208
COG function: function code TK; Serine phosphatase RsbU, regulator of sigma subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PP2C-like domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017944 - InterPro: IPR001932 - InterPro: IPR014787 - InterPro: IPR010822 - ProDom: PD685490 [H]
Pfam domain/function: PF08673 RsbU_N; PF07228 SpoIIE [H]
EC number: =3.1.3.3 [H]
Molecular weight: Translated: 52082; Mature: 51950
Theoretical pI: Translated: 8.57; Mature: 8.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNYQKEKIFSNKFIKNFLENESTEILKNKYKFAEIASSLAYYLKSFSNINKLLDYISLI CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FKHIFSENIILIIPLNYEGDIWNENIKISVNDKYLTIQKEINKFLNQFHFSKNFKIKEIL HHHHHCCCEEEEEEECCCCCEECCEEEEEECCCEEEHHHHHHHHHHHHHCCCCCCHHHHH TFENALKNNFKEYKIETKKIISRGKCRGFIYIFSKDIYIQSITEDSNFNFIENCLAVGLE HHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCC NHYLLKTKKKHENVDREISTGAEIQSQLLPDYCPIIHGIDLAAHCRPALQLGGDYYDFMC CCEEEEECHHHCCCCHHHHCCHHHHHHHCCHHHHHHHCCCHHHHCCHHHHCCCCEEEEEE LKTNISEKRKEKSRWAFVIGDVMGKGIPAGLLMTMLRGMLRAEVLTGLPPDRILHDLNQL EECCCHHHHHHHHHHEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH AINDLDQSHRFVTLFYSDYDPRTRKLRFANAAHNPPLLWKSSDQKIIKLDAEGFVLGLQK HHHCCCCCCCEEEEEEECCCCCHHEEEEECCCCCCCEEEECCCCEEEEEECCCEEEEECC DAEYQCGEIKLNQNDLVLYYTDGVIDTSNSLGQRFDEERLIKTLTKFCKQSYSSQEILNK CCCCCCCEEEECCCCEEEEEECCEEECCHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHH IFKKLDDFTGQNRHLEDDASMVIFQLK HHHHHHHCCCCCCCCCCCCCEEEEEEC >Mature Secondary Structure TNYQKEKIFSNKFIKNFLENESTEILKNKYKFAEIASSLAYYLKSFSNINKLLDYISLI CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FKHIFSENIILIIPLNYEGDIWNENIKISVNDKYLTIQKEINKFLNQFHFSKNFKIKEIL HHHHHCCCEEEEEEECCCCCEECCEEEEEECCCEEEHHHHHHHHHHHHHCCCCCCHHHHH TFENALKNNFKEYKIETKKIISRGKCRGFIYIFSKDIYIQSITEDSNFNFIENCLAVGLE HHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCC NHYLLKTKKKHENVDREISTGAEIQSQLLPDYCPIIHGIDLAAHCRPALQLGGDYYDFMC CCEEEEECHHHCCCCHHHHCCHHHHHHHCCHHHHHHHCCCHHHHCCHHHHCCCCEEEEEE LKTNISEKRKEKSRWAFVIGDVMGKGIPAGLLMTMLRGMLRAEVLTGLPPDRILHDLNQL EECCCHHHHHHHHHHEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH AINDLDQSHRFVTLFYSDYDPRTRKLRFANAAHNPPLLWKSSDQKIIKLDAEGFVLGLQK HHHCCCCCCCEEEEEEECCCCCHHEEEEECCCCCCCEEEECCCCEEEEEECCCEEEEECC DAEYQCGEIKLNQNDLVLYYTDGVIDTSNSLGQRFDEERLIKTLTKFCKQSYSSQEILNK CCCCCCCEEEECCCCEEEEEECCEEECCHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHH IFKKLDDFTGQNRHLEDDASMVIFQLK HHHHHHHCCCCCCCCCCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8002610; 8002609; 9384377; 8824586; 9786195; 12499568 [H]