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The map label for this gene is rimM

Identifier: 123967026

GI number: 123967026

Start: 1579439

End: 1579978

Strand: Direct

Name: rimM

Synonym: P9515_17931

Alternate gene names: 123967026

Gene position: 1579439-1579978 (Clockwise)

Preceding gene: 123967024

Following gene: 123967029

Centisome position: 92.68

GC content: 25.37

Gene sequence:

>540_bases
ATGATAAATCATGATGAATGGTTGATTGTTGGATTAATAACATCTCCTCAAGGAATAAATGGGAAAATTAAAGTTAAGTC
TCTTAGTGATTTTGAAGAAAGATTTACAAAACCTGGTATTAGATGGATACAAAAAGAAACCGAGTCTCCTAAGAAATTAC
AACTTATATCTGGTTTCCAAAAACCTGGCAAAGAATCTTTCGTAATTACATTTAAAGAAATAAAAAATAGAAATGAAGCA
GAAAAATTAAAAGGATATAAGTTACTTGTAAAAGTTGATGAAATTCCTAAGTTAAATAAAAATGAATTTCACTTGACCGA
ACTAATGAATTTAAAAGTGAAAATTTTAGAAAATAACAAATTAAAAATTATAGGTAAAGTTGTAAATTTAGAAAACGAAA
AAAATAATTTACTTGTAATTAAACTTCTAACAAATGATAAAGAGGTTCTTGTCCCATTTGTTAAGGAAATTATTCCAGAA
ATTGATATAAAGAATAAATTTTTAATAATTACTCCTCCGCCAGGCCTTTTAGAATTATGA

Upstream 100 bases:

>100_bases
ATATCCTCTATAAATAGAGTTAACATCTTTAACAATTACTATAGAACCTGGAAGTATTGGTTTATTCGATAATTCCATAG
AAATAATTTACCTACATACT

Downstream 100 bases:

>100_bases
AACTTCATGGGAAATTCATTTTAATGAATCCCACCCAAGAGCTATTCCACTGTTACACTTTTAGCTAAATTTCTTGGTTG
ATCTACATCGAGGCCTCGAT

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MINHDEWLIVGLITSPQGINGKIKVKSLSDFEERFTKPGIRWIQKETESPKKLQLISGFQKPGKESFVITFKEIKNRNEA
EKLKGYKLLVKVDEIPKLNKNEFHLTELMNLKVKILENNKLKIIGKVVNLENEKNNLLVIKLLTNDKEVLVPFVKEIIPE
IDIKNKFLIITPPPGLLEL

Sequences:

>Translated_179_residues
MINHDEWLIVGLITSPQGINGKIKVKSLSDFEERFTKPGIRWIQKETESPKKLQLISGFQKPGKESFVITFKEIKNRNEA
EKLKGYKLLVKVDEIPKLNKNEFHLTELMNLKVKILENNKLKIIGKVVNLENEKNNLLVIKLLTNDKEVLVPFVKEIIPE
IDIKNKFLIITPPPGLLEL
>Mature_179_residues
MINHDEWLIVGLITSPQGINGKIKVKSLSDFEERFTKPGIRWIQKETESPKKLQLISGFQKPGKESFVITFKEIKNRNEA
EKLKGYKLLVKVDEIPKLNKNEFHLTELMNLKVKILENNKLKIIGKVVNLENEKNNLLVIKLLTNDKEVLVPFVKEIIPE
IDIKNKFLIITPPPGLLEL

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=182, Percent_Identity=26.3736263736264, Blast_Score=64, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_PROM5 (A2BYY9)

Other databases:

- EMBL:   CP000552
- RefSeq:   YP_001012107.1
- ProteinModelPortal:   A2BYY9
- SMR:   A2BYY9
- STRING:   A2BYY9
- GeneID:   4719962
- GenomeReviews:   CP000552_GR
- KEGG:   pmc:P9515_17931
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   TSCHGIN
- ProtClustDB:   PRK00122
- BioCyc:   PMAR167542:P9515ORF_1872-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 20646; Mature: 20646

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINHDEWLIVGLITSPQGINGKIKVKSLSDFEERFTKPGIRWIQKETESPKKLQLISGFQ
CCCCCCEEEEEEEECCCCCCCEEEEEECCHHHHHHCCCCHHHHHHCCCCCCEEHHHHCCC
KPGKESFVITFKEIKNRNEAEKLKGYKLLVKVDEIPKLNKNEFHLTELMNLKVKILENNK
CCCCCEEEEEEHHHCCCCHHHHCCCEEEEEEECCCCCCCCCCEEEEEHHCEEEEEEECCC
LKIIGKVVNLENEKNNLLVIKLLTNDKEVLVPFVKEIIPEIDIKNKFLIITPPPGLLEL
EEEEEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCC
>Mature Secondary Structure
MINHDEWLIVGLITSPQGINGKIKVKSLSDFEERFTKPGIRWIQKETESPKKLQLISGFQ
CCCCCCEEEEEEEECCCCCCCEEEEEECCHHHHHHCCCCHHHHHHCCCCCCEEHHHHCCC
KPGKESFVITFKEIKNRNEAEKLKGYKLLVKVDEIPKLNKNEFHLTELMNLKVKILENNK
CCCCCEEEEEEHHHCCCCHHHHCCCEEEEEEECCCCCCCCCCEEEEEHHCEEEEEEECCC
LKIIGKVVNLENEKNNLLVIKLLTNDKEVLVPFVKEIIPEIDIKNKFLIITPPPGLLEL
EEEEEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA