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The map label for this gene is arnC [H]

Identifier: 123966934

GI number: 123966934

Start: 1498275

End: 1499237

Strand: Reverse

Name: arnC [H]

Synonym: P9515_17011

Alternate gene names: 123966934

Gene position: 1499237-1498275 (Counterclockwise)

Preceding gene: 123966935

Following gene: 123966932

Centisome position: 87.97

GC content: 29.6

Gene sequence:

>963_bases
ATGAAAAATATTACTCAGTTGATATCTATTATTATCCCTGTGTTTAATGAAAGTGAGAGTATTGGTTATTTATTAGATGA
AGTTTTAAATGTTATTAAAGATAATAATTATAATTGTGAATTGATAGTAGTTAATGATGGCTCTCGTGATAATACTTCAA
CTGTATTAGATCAATTAACTATTAAGATTAAGGAATTATCAGTAATTTCACTTCGAAAGAATTATGGACAAACTGCAGCA
ATGGCAGCAGGTTTTGATAATTCTAAAGGTGAAATTGTAATTACTCTAGATGGAGACTTACAAAATGATCCTAATGATAT
TCCAAAATTAATTTCATATATTAATTCTGGCTATGATTTAGTTTGTGGATGGAGATATGAAAGGAAAGATAAATTACTTA
ATAGACGCATACCATCAAAAATAGCTAATAAGTTGATAGCTAATGTTACTGGACTGAAGTTGCATGATTACGGTTGTTCA
TTGAAAGCTTTTAAAAAAGAAATTGTAGATGACATAAAATTATACGGTGAACTTCATAGGTTTTTACCAGTTTTAGCGAA
CATAGAAGGAGCTAAAATCAAAGAAATCGAAGTTAATCATAGAAGTCGCCAATACGGCTCTAGTAAATATGGGATAGATA
GAACTTTTAGGGTTTTGATGGATTTACTGACAGTTTGGTTTATGACTAAATTTTTAACTAGACCTATGTATGGATTCGGT
TTTGTTGGAATTATCAGTATTTTGATAAGTCTAGGCATGACTTTTTACTTATTTGTTCTCAAAACTTTAGGTCAAGATAT
TGGTAATCGTCCCATGCTAATGTTTGCTTTAATATTGGGAATTGCAGGTGTTCAATTATTTAGTTTTGGATTATTAGGCG
AACTGTTAATGAGAACTTATCACGAAAGTCAAAATAGGCCGATTTACAGAGTTAGAAAAATCCAAAGTAATTCTAAAGAG
TAA

Upstream 100 bases:

>100_bases
TATTAAATAAGATAAATCACCACTTATGTGGTGATTTTTTTTGTTTAATTTCTTTGTTCTAAATTAAGTTAAAATTAAAA
GATTATTAATCGCGAATCAT

Downstream 100 bases:

>100_bases
TTATTTACGTAAATTTTCTAATAAGTAGGGCAGAACGTTCAACTACCTGAAGGTTCATATCTTTTAATCCTTTTCTGAGA
ATAGGTAATGTAGATTTATC

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: Undecaprenyl-phosphate Ara4FN transferase; Ara4FN transferase [H]

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MKNITQLISIIIPVFNESESIGYLLDEVLNVIKDNNYNCELIVVNDGSRDNTSTVLDQLTIKIKELSVISLRKNYGQTAA
MAAGFDNSKGEIVITLDGDLQNDPNDIPKLISYINSGYDLVCGWRYERKDKLLNRRIPSKIANKLIANVTGLKLHDYGCS
LKAFKKEIVDDIKLYGELHRFLPVLANIEGAKIKEIEVNHRSRQYGSSKYGIDRTFRVLMDLLTVWFMTKFLTRPMYGFG
FVGIISILISLGMTFYLFVLKTLGQDIGNRPMLMFALILGIAGVQLFSFGLLGELLMRTYHESQNRPIYRVRKIQSNSKE

Sequences:

>Translated_320_residues
MKNITQLISIIIPVFNESESIGYLLDEVLNVIKDNNYNCELIVVNDGSRDNTSTVLDQLTIKIKELSVISLRKNYGQTAA
MAAGFDNSKGEIVITLDGDLQNDPNDIPKLISYINSGYDLVCGWRYERKDKLLNRRIPSKIANKLIANVTGLKLHDYGCS
LKAFKKEIVDDIKLYGELHRFLPVLANIEGAKIKEIEVNHRSRQYGSSKYGIDRTFRVLMDLLTVWFMTKFLTRPMYGFG
FVGIISILISLGMTFYLFVLKTLGQDIGNRPMLMFALILGIAGVQLFSFGLLGELLMRTYHESQNRPIYRVRKIQSNSKE
>Mature_320_residues
MKNITQLISIIIPVFNESESIGYLLDEVLNVIKDNNYNCELIVVNDGSRDNTSTVLDQLTIKIKELSVISLRKNYGQTAA
MAAGFDNSKGEIVITLDGDLQNDPNDIPKLISYINSGYDLVCGWRYERKDKLLNRRIPSKIANKLIANVTGLKLHDYGCS
LKAFKKEIVDDIKLYGELHRFLPVLANIEGAKIKEIEVNHRSRQYGSSKYGIDRTFRVLMDLLTVWFMTKFLTRPMYGFG
FVGIISILISLGMTFYLFVLKTLGQDIGNRPMLMFALILGIAGVQLFSFGLLGELLMRTYHESQNRPIYRVRKIQSNSKE

Specific function: Catalyzes the transfer of 4-deoxy-4-formamido-L- arabinose from UDP to undecaprenyl phosphate. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Homo sapiens, GI4503363, Length=234, Percent_Identity=29.0598290598291, Blast_Score=79, Evalue=5e-15,
Organism=Escherichia coli, GI1788588, Length=317, Percent_Identity=35.0157728706625, Blast_Score=194, Evalue=5e-51,
Organism=Escherichia coli, GI1788692, Length=313, Percent_Identity=26.8370607028754, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1787259, Length=93, Percent_Identity=39.7849462365591, Blast_Score=72, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI71999402, Length=222, Percent_Identity=27.027027027027, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24585265, Length=235, Percent_Identity=27.6595744680851, Blast_Score=71, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022857
- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: =2.7.8.30 [H]

Molecular weight: Translated: 36365; Mature: 36365

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNITQLISIIIPVFNESESIGYLLDEVLNVIKDNNYNCELIVVNDGSRDNTSTVLDQLT
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHH
IKIKELSVISLRKNYGQTAAMAAGFDNSKGEIVITLDGDLQNDPNDIPKLISYINSGYDL
HHHHHHHHHHHHHHCCCHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEE
VCGWRYERKDKLLNRRIPSKIANKLIANVTGLKLHDYGCSLKAFKKEIVDDIKLYGELHR
EEECCHHHHHHHHHHCCHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHH
FLPVLANIEGAKIKEIEVNHRSRQYGSSKYGIDRTFRVLMDLLTVWFMTKFLTRPMYGFG
HHHHHHCCCCCEEEEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
FVGIISILISLGMTFYLFVLKTLGQDIGNRPMLMFALILGIAGVQLFSFGLLGELLMRTY
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HESQNRPIYRVRKIQSNSKE
HHCCCCCHHHHHHHHCCCCC
>Mature Secondary Structure
MKNITQLISIIIPVFNESESIGYLLDEVLNVIKDNNYNCELIVVNDGSRDNTSTVLDQLT
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHH
IKIKELSVISLRKNYGQTAAMAAGFDNSKGEIVITLDGDLQNDPNDIPKLISYINSGYDL
HHHHHHHHHHHHHHCCCHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEE
VCGWRYERKDKLLNRRIPSKIANKLIANVTGLKLHDYGCSLKAFKKEIVDDIKLYGELHR
EEECCHHHHHHHHHHCCHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHH
FLPVLANIEGAKIKEIEVNHRSRQYGSSKYGIDRTFRVLMDLLTVWFMTKFLTRPMYGFG
HHHHHHCCCCCEEEEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
FVGIISILISLGMTFYLFVLKTLGQDIGNRPMLMFALILGIAGVQLFSFGLLGELLMRTY
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HESQNRPIYRVRKIQSNSKE
HHCCCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA