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The map label for this gene is atpD [H]

Identifier: 123966850

GI number: 123966850

Start: 1413296

End: 1414756

Strand: Direct

Name: atpD [H]

Synonym: P9515_16171

Alternate gene names: 123966850

Gene position: 1413296-1414756 (Clockwise)

Preceding gene: 123966847

Following gene: 123966851

Centisome position: 82.93

GC content: 39.77

Gene sequence:

>1461_bases
ATGGTAGCAACTCCATCAACTTCAGCACCAACAAAGGGTGTAGTACGTCAAGTAATTGGTCCAGTTTTGGATGTAGAATT
TCCAGCTGGTAAATTACCAAAAATATTGAATGCTTTAAGAATTGAATCAAAGAACCCAGCAGGTCAGGACATAGCGCTCA
CTGCAGAGGTCCAACAGCTGTTAGGAGACCATAGAGTTAGAGCTGTTGCCATGAGCGGCACTGACGGCCTTGTGAGAGGC
ATGGAGGCGACTGATACAGGTGCTCCTATATCAGTTCCTGTTGGAGAGGCGACTTTAGGAAGAATATTTAATGTATTAGG
AGAGCCAGTAGATGAACAAGGTCCAGTAAAAACTTCAGACACTGCTCCAATCCACAGATCAGCACCTAAATTAACTGATT
TAGAGACTAAGCCTAAAGTTTTCGAAACAGGAATTAAGGTTATAGACCTATTAGCTCCCTACAGACAAGGAGGTAAAGTC
GGTTTGTTTGGAGGTGCTGGCGTAGGTAAAACAGTATTGATACAGGAATTAATTAATAATATTGCCAAAGAGCATGGTGG
TGTATCAGTGTTTGGAGGGGTTGGGGAAAGAACTAGAGAGGGAAATGATTTATACGAAGAATTTAAAGAGTCAGGTGTTA
TTAACGCAGAAGATTTATCTCAATCTAAAGTTGCTTTGTGCTTCGGCCAGATGAATGAGCCACCAGGTGCCAGGATGAGA
GTTGGCTTATCAGCATTAACTATGGCTGAACATTTTAGAGATGTAAACAAGCAAGATGTTCTTCTTTTTGTAGACAATAT
TTTTAGATTTGTTCAAGCCGGTTCTGAAGTATCAGCATTGCTTGGAAGAATGCCTTCTGCGGTTGGTTATCAACCTACTT
TAGGAACTGATGTTGGAGCATTACAAGAAAGAATCACTTCAACTTTAGAGGGTTCCATTACATCAATTCAGGCTGTATAT
GTTCCAGCTGATGATCTAACTGACCCAGCTCCTGCTACAACTTTTGCACACTTAGATGCCACAACCGTTCTAGCAAGAGG
TCTTGCTGCAAAGGGTATTTACCCTGCAGTTGACCCTCTAGACTCAACAAGCACAATGCTCCAACCATCAGTAGTTGGCG
ATGACCATTATAAAACTGCTCGTGCAGTTCAATCTACTTTACAAAGATATAAAGAGCTCCAAGATATTATTGCAATTCTT
GGTTTAGATGAATTATCTGAAGAAGACAGATTAACTGTTAGCAGAGCAAGAAAGATTGAAAAATTCTTGTCTCAGCCATT
CTTCGTAGCAGAAATTTTTACAGGAATGTCTGGAAAATATGTCAAATTAGAAGATACAATTGCTGGTTTTAATATGATAT
TGGCTGGTGAACTAGATGATTTGCCCGAGCAAGCATTTTACTTGGTGGGTAATATTGAAGAAGTAAAAGCTAAAGCAGAC
AAAATAAATTCAGAAAAATAA

Upstream 100 bases:

>100_bases
CGGTTGGCCGAACCCAGTTAACGAATATACCCTCGAGGTGGTAATATTTCGCATTATGGGCTGTTCTAAAATCAGCTAAT
CATCACCAAGTCAATACAAA

Downstream 100 bases:

>100_bases
ATTATCAACTTTAATAAATAATTCTAAAAACTTTAAAAATTTAAATTAATGGCAATTTCACTCAAGGTTTTAGCTCCAAA
TCAAAATGTTTACGAAGGTG

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 486; Mature: 486

Protein sequence:

>486_residues
MVATPSTSAPTKGVVRQVIGPVLDVEFPAGKLPKILNALRIESKNPAGQDIALTAEVQQLLGDHRVRAVAMSGTDGLVRG
MEATDTGAPISVPVGEATLGRIFNVLGEPVDEQGPVKTSDTAPIHRSAPKLTDLETKPKVFETGIKVIDLLAPYRQGGKV
GLFGGAGVGKTVLIQELINNIAKEHGGVSVFGGVGERTREGNDLYEEFKESGVINAEDLSQSKVALCFGQMNEPPGARMR
VGLSALTMAEHFRDVNKQDVLLFVDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVGALQERITSTLEGSITSIQAVY
VPADDLTDPAPATTFAHLDATTVLARGLAAKGIYPAVDPLDSTSTMLQPSVVGDDHYKTARAVQSTLQRYKELQDIIAIL
GLDELSEEDRLTVSRARKIEKFLSQPFFVAEIFTGMSGKYVKLEDTIAGFNMILAGELDDLPEQAFYLVGNIEEVKAKAD
KINSEK

Sequences:

>Translated_486_residues
MVATPSTSAPTKGVVRQVIGPVLDVEFPAGKLPKILNALRIESKNPAGQDIALTAEVQQLLGDHRVRAVAMSGTDGLVRG
MEATDTGAPISVPVGEATLGRIFNVLGEPVDEQGPVKTSDTAPIHRSAPKLTDLETKPKVFETGIKVIDLLAPYRQGGKV
GLFGGAGVGKTVLIQELINNIAKEHGGVSVFGGVGERTREGNDLYEEFKESGVINAEDLSQSKVALCFGQMNEPPGARMR
VGLSALTMAEHFRDVNKQDVLLFVDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVGALQERITSTLEGSITSIQAVY
VPADDLTDPAPATTFAHLDATTVLARGLAAKGIYPAVDPLDSTSTMLQPSVVGDDHYKTARAVQSTLQRYKELQDIIAIL
GLDELSEEDRLTVSRARKIEKFLSQPFFVAEIFTGMSGKYVKLEDTIAGFNMILAGELDDLPEQAFYLVGNIEEVKAKAD
KINSEK
>Mature_486_residues
MVATPSTSAPTKGVVRQVIGPVLDVEFPAGKLPKILNALRIESKNPAGQDIALTAEVQQLLGDHRVRAVAMSGTDGLVRG
MEATDTGAPISVPVGEATLGRIFNVLGEPVDEQGPVKTSDTAPIHRSAPKLTDLETKPKVFETGIKVIDLLAPYRQGGKV
GLFGGAGVGKTVLIQELINNIAKEHGGVSVFGGVGERTREGNDLYEEFKESGVINAEDLSQSKVALCFGQMNEPPGARMR
VGLSALTMAEHFRDVNKQDVLLFVDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVGALQERITSTLEGSITSIQAVY
VPADDLTDPAPATTFAHLDATTVLARGLAAKGIYPAVDPLDSTSTMLQPSVVGDDHYKTARAVQSTLQRYKELQDIIAIL
GLDELSEEDRLTVSRARKIEKFLSQPFFVAEIFTGMSGKYVKLEDTIAGFNMILAGELDDLPEQAFYLVGNIEEVKAKAD
KINSEK

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=482, Percent_Identity=67.6348547717842, Blast_Score=652, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=298, Percent_Identity=28.8590604026846, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI19913428, Length=378, Percent_Identity=26.4550264550265, Blast_Score=105, Evalue=9e-23,
Organism=Homo sapiens, GI19913426, Length=393, Percent_Identity=26.4631043256997, Blast_Score=105, Evalue=9e-23,
Organism=Homo sapiens, GI50345984, Length=411, Percent_Identity=25.5474452554745, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI4757810, Length=411, Percent_Identity=25.5474452554745, Blast_Score=80, Evalue=3e-15,
Organism=Escherichia coli, GI1790170, Length=470, Percent_Identity=64.6808510638298, Blast_Score=602, Evalue=1e-173,
Organism=Escherichia coli, GI1788251, Length=348, Percent_Identity=30.7471264367816, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1790172, Length=426, Percent_Identity=23.4741784037559, Blast_Score=94, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI25144756, Length=481, Percent_Identity=65.2806652806653, Blast_Score=633, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17570191, Length=390, Percent_Identity=26.6666666666667, Blast_Score=113, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17510931, Length=390, Percent_Identity=26.6666666666667, Blast_Score=112, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI17565854, Length=299, Percent_Identity=28.4280936454849, Blast_Score=105, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI71988080, Length=306, Percent_Identity=24.8366013071895, Blast_Score=84, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI71988063, Length=306, Percent_Identity=24.8366013071895, Blast_Score=83, Evalue=3e-16,
Organism=Saccharomyces cerevisiae, GI6322581, Length=475, Percent_Identity=67.1578947368421, Blast_Score=644, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319603, Length=394, Percent_Identity=26.9035532994924, Blast_Score=112, Evalue=2e-25,
Organism=Saccharomyces cerevisiae, GI6319370, Length=393, Percent_Identity=24.4274809160305, Blast_Score=81, Evalue=4e-16,
Organism=Saccharomyces cerevisiae, GI6320016, Length=251, Percent_Identity=25.8964143426295, Blast_Score=70, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24638766, Length=474, Percent_Identity=66.4556962025316, Blast_Score=637, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=471, Percent_Identity=67.515923566879, Blast_Score=623, Evalue=1e-179,
Organism=Drosophila melanogaster, GI20129479, Length=431, Percent_Identity=27.3781902552204, Blast_Score=116, Evalue=3e-26,
Organism=Drosophila melanogaster, GI281361666, Length=410, Percent_Identity=27.0731707317073, Blast_Score=115, Evalue=5e-26,
Organism=Drosophila melanogaster, GI24646341, Length=410, Percent_Identity=27.0731707317073, Blast_Score=115, Evalue=5e-26,
Organism=Drosophila melanogaster, GI17136796, Length=410, Percent_Identity=27.0731707317073, Blast_Score=115, Evalue=5e-26,
Organism=Drosophila melanogaster, GI24583988, Length=302, Percent_Identity=28.8079470198675, Blast_Score=109, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24583986, Length=302, Percent_Identity=28.8079470198675, Blast_Score=109, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24583984, Length=302, Percent_Identity=28.8079470198675, Blast_Score=109, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24583992, Length=321, Percent_Identity=27.4143302180685, Blast_Score=109, Evalue=5e-24,
Organism=Drosophila melanogaster, GI24638768, Length=97, Percent_Identity=50.5154639175258, Blast_Score=89, Evalue=5e-18,
Organism=Drosophila melanogaster, GI24658560, Length=400, Percent_Identity=24.25, Blast_Score=80, Evalue=4e-15,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 51973; Mature: 51973

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVATPSTSAPTKGVVRQVIGPVLDVEFPAGKLPKILNALRIESKNPAGQDIALTAEVQQL
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEHHHHHHH
LGDHRVRAVAMSGTDGLVRGMEATDTGAPISVPVGEATLGRIFNVLGEPVDEQGPVKTSD
HCCCCEEEEEECCCCHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCCCC
TAPIHRSAPKLTDLETKPKVFETGIKVIDLLAPYRQGGKVGLFGGAGVGKTVLIQELINN
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHH
IAKEHGGVSVFGGVGERTREGNDLYEEFKESGVINAEDLSQSKVALCFGQMNEPPGARMR
HHHHCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCHHHCCCHHHHHHHHCCCCCCCCCEE
VGLSALTMAEHFRDVNKQDVLLFVDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVGA
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCHHH
LQERITSTLEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLARGLAAKGIYPAVDPL
HHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
DSTSTMLQPSVVGDDHYKTARAVQSTLQRYKELQDIIAILGLDELSEEDRLTVSRARKIE
CCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCHHHHHHHHHHHH
KFLSQPFFVAEIFTGMSGKYVKLEDTIAGFNMILAGELDDLPEQAFYLVGNIEEVKAKAD
HHHCCCHHHHHHHHCCCCCEEEEECHHCCCCEEEECCCCCCCHHHEEHHCCHHHHHHHHH
KINSEK
HCCCCC
>Mature Secondary Structure
MVATPSTSAPTKGVVRQVIGPVLDVEFPAGKLPKILNALRIESKNPAGQDIALTAEVQQL
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEHHHHHHH
LGDHRVRAVAMSGTDGLVRGMEATDTGAPISVPVGEATLGRIFNVLGEPVDEQGPVKTSD
HCCCCEEEEEECCCCHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCCCC
TAPIHRSAPKLTDLETKPKVFETGIKVIDLLAPYRQGGKVGLFGGAGVGKTVLIQELINN
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHH
IAKEHGGVSVFGGVGERTREGNDLYEEFKESGVINAEDLSQSKVALCFGQMNEPPGARMR
HHHHCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCHHHCCCHHHHHHHHCCCCCCCCCEE
VGLSALTMAEHFRDVNKQDVLLFVDNIFRFVQAGSEVSALLGRMPSAVGYQPTLGTDVGA
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCHHH
LQERITSTLEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLARGLAAKGIYPAVDPL
HHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
DSTSTMLQPSVVGDDHYKTARAVQSTLQRYKELQDIIAILGLDELSEEDRLTVSRARKIE
CCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCHHHHHHHHHHHH
KFLSQPFFVAEIFTGMSGKYVKLEDTIAGFNMILAGELDDLPEQAFYLVGNIEEVKAKAD
HHHCCCHHHHHHHHCCCCCEEEEECHHCCCCEEEECCCCCCCHHHEEHHCCHHHHHHHHH
KINSEK
HCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA