| Definition | Prochlorococcus marinus str. MIT 9515, complete genome. |
|---|---|
| Accession | NC_008817 |
| Length | 1,704,176 |
Click here to switch to the map view.
The map label for this gene is yjgQ [C]
Identifier: 123966805
GI number: 123966805
Start: 1384344
End: 1385504
Strand: Reverse
Name: yjgQ [C]
Synonym: P9515_15721
Alternate gene names: 123966805
Gene position: 1385504-1384344 (Counterclockwise)
Preceding gene: 123966806
Following gene: 123966804
Centisome position: 81.3
GC content: 30.75
Gene sequence:
>1161_bases ATGTCTGCAATTTTAAGAAAAATTCCTCTTATAGATAAGTGGATAATATCGAAATTAATACCAATATTATTTTTTGCAAT TTCTGCTTTTACCATCGTATCTCTCTCCGTAGGGGTAATGTTTGATCTCATAAGAAAGATTGTTGAGTATGGATTACCTA TTTTTATAGCTTTAAAAATCTTTTTTTTAAGCCTGCCAGGATTCTTGGTTATTGCATTTCCTATGTCCGTTCTACTCTCA TGCTTACTAACTTATGGCAATCTTTCTTCAAATTCAGAAATATTAGCGCTAAAAAGTCTAGGAGTTAATAATTTTCGAGT AGTTTTACCTTCTTTGCTTTTGGCAGTTTTTATGACATTTCTTACATTTACTTTTAGTGATAATTTGGTTCCAATTTCAA ATCGTTTGGCCGCTGATTTATTGCAGAATAGTATGGGGAAATCAATGAGAACTGAAAGAGGAAGATATAATATTTCATTT TCGAAATATGGTTCAATTGTAGATAGTAATACTAATAAACCTATTGATGGAGCTTCTCATTTAACTCATATTTTTTATGC ACGGAGATTCCTAAAGAAAACCATGTATGATATTACAGTTATTGATTTTTCAAAAAAAGGAACAAAAATATTAATAACCG CTCAAAATGGTGTATTTGATGAAGAATTAAGTAGTTGGCAATTTAATAATGGAAAGATAATGGCTACTGAGGATGAGGGA TCTGTATCAACGATAATATTTGATACCTACATTTATCCATTAGATAATGGTCCATCTAAATTAGCTGAGATCCCTCTTGA CGCAAATAATATGACAATATCTCAAGCTAGAAAAGCTCAGAAAATGTATGAGATGTCAGGAAATACAAAAGAATCTAGAA AGATGAAAGTAAGAATTTATGAAAAAATGACATTACCTATGTCCTGCATAGTTTTTGCTTTGATAGGTAGCACGCTTGGG ATAAAACAAAATATTAGATCTTCAAAGAGTCAAGGATTTGGTATTAGTATTATACTTATTTTTTTATATTATTTAACTTG TTTCGTTTTTAGTTCGATGGGGGTTATTGGTATATTGACTCCCTTTTTTGCAGCTTGGATACCTGTCCTTATGTTTTTAG GTTTTGGAACCTTCTTACTATGGAGATCTAACGGAGTTTAG
Upstream 100 bases:
>100_bases ATCTCTTTAGTAGATCTAATAGTATATATATTTTTCCAATAAAAGTAGTTCCTTCTAGTCTAGAATTATTATCTTGAGAA ATTTAAAACTGCACTATAAG
Downstream 100 bases:
>100_bases TTAGGTATTGATCTTTTAAAATGATATATTTCTTTTCTAGTTTGTTTAAGTTATTTATCCATATATCCAACATTTTTTAA TTGAAACTAAAGACTCTTTG
Product: putative permease
Products: NA
Alternate protein names: Permease; Permease YjgP/YjgQ; Permease YjgP/YjgQ Family; Permease Yjgp/Yjgq Family Protein; YjgP/YjgQ Family Protein; Unclassified ABC-Type Transport System Permease; Permease Family Protein; YjgP/YjgQ Permease Superfamily; YjgP/YjgQ Family Permease; YjgP/YjgQ Permease; YjgP/YjgQ Family Membrane Protein
Number of amino acids: Translated: 386; Mature: 385
Protein sequence:
>386_residues MSAILRKIPLIDKWIISKLIPILFFAISAFTIVSLSVGVMFDLIRKIVEYGLPIFIALKIFFLSLPGFLVIAFPMSVLLS CLLTYGNLSSNSEILALKSLGVNNFRVVLPSLLLAVFMTFLTFTFSDNLVPISNRLAADLLQNSMGKSMRTERGRYNISF SKYGSIVDSNTNKPIDGASHLTHIFYARRFLKKTMYDITVIDFSKKGTKILITAQNGVFDEELSSWQFNNGKIMATEDEG SVSTIIFDTYIYPLDNGPSKLAEIPLDANNMTISQARKAQKMYEMSGNTKESRKMKVRIYEKMTLPMSCIVFALIGSTLG IKQNIRSSKSQGFGISIILIFLYYLTCFVFSSMGVIGILTPFFAAWIPVLMFLGFGTFLLWRSNGV
Sequences:
>Translated_386_residues MSAILRKIPLIDKWIISKLIPILFFAISAFTIVSLSVGVMFDLIRKIVEYGLPIFIALKIFFLSLPGFLVIAFPMSVLLS CLLTYGNLSSNSEILALKSLGVNNFRVVLPSLLLAVFMTFLTFTFSDNLVPISNRLAADLLQNSMGKSMRTERGRYNISF SKYGSIVDSNTNKPIDGASHLTHIFYARRFLKKTMYDITVIDFSKKGTKILITAQNGVFDEELSSWQFNNGKIMATEDEG SVSTIIFDTYIYPLDNGPSKLAEIPLDANNMTISQARKAQKMYEMSGNTKESRKMKVRIYEKMTLPMSCIVFALIGSTLG IKQNIRSSKSQGFGISIILIFLYYLTCFVFSSMGVIGILTPFFAAWIPVLMFLGFGTFLLWRSNGV >Mature_385_residues SAILRKIPLIDKWIISKLIPILFFAISAFTIVSLSVGVMFDLIRKIVEYGLPIFIALKIFFLSLPGFLVIAFPMSVLLSC LLTYGNLSSNSEILALKSLGVNNFRVVLPSLLLAVFMTFLTFTFSDNLVPISNRLAADLLQNSMGKSMRTERGRYNISFS KYGSIVDSNTNKPIDGASHLTHIFYARRFLKKTMYDITVIDFSKKGTKILITAQNGVFDEELSSWQFNNGKIMATEDEGS VSTIIFDTYIYPLDNGPSKLAEIPLDANNMTISQARKAQKMYEMSGNTKESRKMKVRIYEKMTLPMSCIVFALIGSTLGI KQNIRSSKSQGFGISIILIFLYYLTCFVFSSMGVIGILTPFFAAWIPVLMFLGFGTFLLWRSNGV
Specific function: Unknown
COG id: COG0795
COG function: function code R; Predicted permeases
Gene ontology:
Cell location: Integral Membrane Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43222; Mature: 43091
Theoretical pI: Translated: 10.10; Mature: 10.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAILRKIPLIDKWIISKLIPILFFAISAFTIVSLSVGVMFDLIRKIVEYGLPIFIALKI CCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH FFLSLPGFLVIAFPMSVLLSCLLTYGNLSSNSEILALKSLGVNNFRVVLPSLLLAVFMTF HHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHH LTFTFSDNLVPISNRLAADLLQNSMGKSMRTERGRYNISFSKYGSIVDSNTNKPIDGASH HHHHHCCCEECHHHHHHHHHHHHHHCCHHHHCCCCEEEEHHHHCCEEECCCCCCCCHHHH LTHIFYARRFLKKTMYDITVIDFSKKGTKILITAQNGVFDEELSSWQFNNGKIMATEDEG HHHHHHHHHHHHHHHHEEEEEEECCCCCEEEEEECCCCCHHHHHCCEECCCEEEEECCCC SVSTIIFDTYIYPLDNGPSKLAEIPLDANNMTISQARKAQKMYEMSGNTKESRKMKVRIY CEEEEEEEEEEEECCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHEEEEEE EKMTLPMSCIVFALIGSTLGIKQNIRSSKSQGFGISIILIFLYYLTCFVFSSMGVIGILT HHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHH PFFAAWIPVLMFLGFGTFLLWRSNGV HHHHHHHHHHHHHHHHHEEEEECCCC >Mature Secondary Structure SAILRKIPLIDKWIISKLIPILFFAISAFTIVSLSVGVMFDLIRKIVEYGLPIFIALKI CCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH FFLSLPGFLVIAFPMSVLLSCLLTYGNLSSNSEILALKSLGVNNFRVVLPSLLLAVFMTF HHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHH LTFTFSDNLVPISNRLAADLLQNSMGKSMRTERGRYNISFSKYGSIVDSNTNKPIDGASH HHHHHCCCEECHHHHHHHHHHHHHHCCHHHHCCCCEEEEHHHHCCEEECCCCCCCCHHHH LTHIFYARRFLKKTMYDITVIDFSKKGTKILITAQNGVFDEELSSWQFNNGKIMATEDEG HHHHHHHHHHHHHHHHEEEEEEECCCCCEEEEEECCCCCHHHHHCCEECCCEEEEECCCC SVSTIIFDTYIYPLDNGPSKLAEIPLDANNMTISQARKAQKMYEMSGNTKESRKMKVRIY CEEEEEEEEEEEECCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHEEEEEE EKMTLPMSCIVFALIGSTLGIKQNIRSSKSQGFGISIILIFLYYLTCFVFSSMGVIGILT HHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHH PFFAAWIPVLMFLGFGTFLLWRSNGV HHHHHHHHHHHHHHHHHEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA