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The map label for this gene is 123966793

Identifier: 123966793

GI number: 123966793

Start: 1376566

End: 1377693

Strand: Direct

Name: 123966793

Synonym: P9515_15601

Alternate gene names: NA

Gene position: 1376566-1377693 (Clockwise)

Preceding gene: 123966792

Following gene: 123966794

Centisome position: 80.78

GC content: 35.37

Gene sequence:

>1128_bases
ATGAGTGATATCCCAAGCTTGAAAGAGTTTCAAAGTGTGATTCCAAATCACTGCTTCAAACCTCAAACCAGAACTTCATT
ACGCTATCTTTTACAGTCGACCATTATTCAGGCAATTGTTATAGCAATAGGATTAACTATTCCTTTCACTCAAAGTATGA
TCCCAATTTGGATTCTTTATGCATTTTTATCAGGAACAACTGCGATGGGTTTTTGGGTAATTGCCCACGAATGTGGTCAT
GGGGCATTCTCGAAAAATAGGACCTTGGAAACCATTACTGGATATTTACTTCATTCATTATTATTAGTTCCATATTTCTC
TTGGCAACGTTCACATGCAGTCCATCATCGTTTCACCAATCATATAACCAATGGAGAAACTCACGTCCCAATAGTTATTG
ATGGGAATGGAATTAGCGAAAAAGTTGGAGGTGAAAAGGAACTTTCTTTTTCAAGTAAATTAGGCAAAACTAAGTATGGA
ATTCTCCAACTTGTTCTTCATCTTATTTTTGGTTGGCCTGCTTATTTATTATCAGGAAGTACAGGAGGGATCAAATATGG
AACTTCAAATCATTTTTGGCCAAGGAAACCTTTTTCTAAGACATTATGGCCTGCTGTATGGGCTAAGAAAGTTTGGATTT
CAGACATTGGTGTAGCTGCAGTAATAATTGGACTTATTATTTTAGTTACCAAATATGGAATTTTTCCAATAATAGCAATG
TATTTTGGTCCCTTATTAGTAGTTAATTGTTGGTTAGTTATCTATACTTGGCTTCATCATACAGATTCAGATGTTCCACA
CCTCGCTAATTCAGAATTTTCTTTTATGAGAGGAGCCTTCCTTTCCATTGATAGGCCTTATGGCAAGATTATTAATTTAC
TTCATCATAATATTGGTTCAAGTCATGTAGTTCATCATGTGTGCCCAACTATTCCTCACTATCATGCTACGAAGGCAACT
CTTGCAATAAAAAAAGCATTCAATAAAGCCTACCTTTTCAATCCCGATCCAATACATAAGGCTTTATGGAATATTGCTTG
TAATTGTATTGCTGTTAAATCAGAGATGGATGACGGAAGGTATATTTGGCAATCCTCTTACAAAAAAAATGTTCAAACCA
AATTCTGA

Upstream 100 bases:

>100_bases
ATTATGTAGATTAAAATTTATTTAAAACTAAATCCTAACCAAAAAAAATTTGAGTAATATTAATTTTTCTGGCCTTAAAG
GTCAAGCACTTGCAATAAAG

Downstream 100 bases:

>100_bases
TAATTTAACTCATATCACATAAATTTACGCAAATCTGAAAATAATATAAAAGATTCAGGAAATTAGGTACTTTCTATCTT
AAATAGTTAACTATATAAAC

Product: fatty acid desaturase, type 2

Products: NA

Alternate protein names: Delta(12)-Fatty Acid Dehydrogenase; Omega-3 Fatty Acid Desaturase; Fatty Acid Desaturase Domain Protein; Omega-3 Acyl-Lipid Desaturase; Omega 3 Acyl-Lipid Desaturase; Phosphatidylcholine Desaturase

Number of amino acids: Translated: 375; Mature: 374

Protein sequence:

>375_residues
MSDIPSLKEFQSVIPNHCFKPQTRTSLRYLLQSTIIQAIVIAIGLTIPFTQSMIPIWILYAFLSGTTAMGFWVIAHECGH
GAFSKNRTLETITGYLLHSLLLVPYFSWQRSHAVHHRFTNHITNGETHVPIVIDGNGISEKVGGEKELSFSSKLGKTKYG
ILQLVLHLIFGWPAYLLSGSTGGIKYGTSNHFWPRKPFSKTLWPAVWAKKVWISDIGVAAVIIGLIILVTKYGIFPIIAM
YFGPLLVVNCWLVIYTWLHHTDSDVPHLANSEFSFMRGAFLSIDRPYGKIINLLHHNIGSSHVVHHVCPTIPHYHATKAT
LAIKKAFNKAYLFNPDPIHKALWNIACNCIAVKSEMDDGRYIWQSSYKKNVQTKF

Sequences:

>Translated_375_residues
MSDIPSLKEFQSVIPNHCFKPQTRTSLRYLLQSTIIQAIVIAIGLTIPFTQSMIPIWILYAFLSGTTAMGFWVIAHECGH
GAFSKNRTLETITGYLLHSLLLVPYFSWQRSHAVHHRFTNHITNGETHVPIVIDGNGISEKVGGEKELSFSSKLGKTKYG
ILQLVLHLIFGWPAYLLSGSTGGIKYGTSNHFWPRKPFSKTLWPAVWAKKVWISDIGVAAVIIGLIILVTKYGIFPIIAM
YFGPLLVVNCWLVIYTWLHHTDSDVPHLANSEFSFMRGAFLSIDRPYGKIINLLHHNIGSSHVVHHVCPTIPHYHATKAT
LAIKKAFNKAYLFNPDPIHKALWNIACNCIAVKSEMDDGRYIWQSSYKKNVQTKF
>Mature_374_residues
SDIPSLKEFQSVIPNHCFKPQTRTSLRYLLQSTIIQAIVIAIGLTIPFTQSMIPIWILYAFLSGTTAMGFWVIAHECGHG
AFSKNRTLETITGYLLHSLLLVPYFSWQRSHAVHHRFTNHITNGETHVPIVIDGNGISEKVGGEKELSFSSKLGKTKYGI
LQLVLHLIFGWPAYLLSGSTGGIKYGTSNHFWPRKPFSKTLWPAVWAKKVWISDIGVAAVIIGLIILVTKYGIFPIIAMY
FGPLLVVNCWLVIYTWLHHTDSDVPHLANSEFSFMRGAFLSIDRPYGKIINLLHHNIGSSHVVHHVCPTIPHYHATKATL
AIKKAFNKAYLFNPDPIHKALWNIACNCIAVKSEMDDGRYIWQSSYKKNVQTKF

Specific function: Unknown

COG id: COG3239

COG function: function code I; Fatty acid desaturase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Caenorhabditis elegans, GI17542730, Length=339, Percent_Identity=30.9734513274336, Blast_Score=147, Evalue=1e-35,
Organism=Caenorhabditis elegans, GI71999459, Length=327, Percent_Identity=29.9694189602446, Blast_Score=137, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 1.14.99.-

Molecular weight: Translated: 42294; Mature: 42163

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDIPSLKEFQSVIPNHCFKPQTRTSLRYLLQSTIIQAIVIAIGLTIPFTQSMIPIWILY
CCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
AFLSGTTAMGFWVIAHECGHGAFSKNRTLETITGYLLHSLLLVPYFSWQRSHAVHHRFTN
HHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HITNGETHVPIVIDGNGISEKVGGEKELSFSSKLGKTKYGILQLVLHLIFGWPAYLLSGS
HCCCCCEEEEEEEECCCCHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCHHHHHCCC
TGGIKYGTSNHFWPRKPFSKTLWPAVWAKKVWISDIGVAAVIIGLIILVTKYGIFPIIAM
CCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
YFGPLLVVNCWLVIYTWLHHTDSDVPHLANSEFSFMRGAFLSIDRPYGKIINLLHHNIGS
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCC
SHVVHHVCPTIPHYHATKATLAIKKAFNKAYLFNPDPIHKALWNIACNCIAVKSEMDDGR
HHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHEEEECCCCCCH
YIWQSSYKKNVQTKF
HHHHHHHHCCCCCCC
>Mature Secondary Structure 
SDIPSLKEFQSVIPNHCFKPQTRTSLRYLLQSTIIQAIVIAIGLTIPFTQSMIPIWILY
CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
AFLSGTTAMGFWVIAHECGHGAFSKNRTLETITGYLLHSLLLVPYFSWQRSHAVHHRFTN
HHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HITNGETHVPIVIDGNGISEKVGGEKELSFSSKLGKTKYGILQLVLHLIFGWPAYLLSGS
HCCCCCEEEEEEEECCCCHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCHHHHHCCC
TGGIKYGTSNHFWPRKPFSKTLWPAVWAKKVWISDIGVAAVIIGLIILVTKYGIFPIIAM
CCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
YFGPLLVVNCWLVIYTWLHHTDSDVPHLANSEFSFMRGAFLSIDRPYGKIINLLHHNIGS
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCC
SHVVHHVCPTIPHYHATKATLAIKKAFNKAYLFNPDPIHKALWNIACNCIAVKSEMDDGR
HHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHEEEECCCCCCH
YIWQSSYKKNVQTKF
HHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA