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The map label for this gene is rbpD [H]

Identifier: 123966783

GI number: 123966783

Start: 1370099

End: 1370389

Strand: Direct

Name: rbpD [H]

Synonym: P9515_15501

Alternate gene names: 123966783

Gene position: 1370099-1370389 (Clockwise)

Preceding gene: 123966782

Following gene: 123966784

Centisome position: 80.4

GC content: 34.02

Gene sequence:

>291_bases
ATGACAATTTTCATTGGAAATTTATCATGGAACACTGAAGAGAAGGATCTTAAAGACCTTTTCAATACTTATGGTGAAGT
TACAAAATGTATGATTCCTTTAGAGAGAAATTCAAGAAGAAAAAGAGGTTTTGGCTTTGTCGAAATGACCAGTGAAAGCT
CAGAAAAAACTGCGATTGATGATTTGCAAGATGTCGAATGGATGGGCAGGGAAATTAGAGTTTATAAGGCGGAGCAAAGA
GATCGCTCTTCAACGAAAAATAGACGTTATGGTATTAAAAAAAATAGTTAA

Upstream 100 bases:

>100_bases
GATAAATGAAAAAATCAGTTCAAACCAAAAACCCTAATATTACCTATCTATTTAAATAAGCGCCTTATTCCAGCTATCTT
TAAATAGCTTTTTTAAAATT

Downstream 100 bases:

>100_bases
GAAGCCTCTTCTTTATTATTTACTTCTTAGTTTTTTTGAAAAATAAATTCCTAAAAACTGTATAAATAAGAAGCCTTTTA
TTTATTTATGTAGCCTAAAG

Product: RNA-binding protein RbpD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 96; Mature: 95

Protein sequence:

>96_residues
MTIFIGNLSWNTEEKDLKDLFNTYGEVTKCMIPLERNSRRKRGFGFVEMTSESSEKTAIDDLQDVEWMGREIRVYKAEQR
DRSSTKNRRYGIKKNS

Sequences:

>Translated_96_residues
MTIFIGNLSWNTEEKDLKDLFNTYGEVTKCMIPLERNSRRKRGFGFVEMTSESSEKTAIDDLQDVEWMGREIRVYKAEQR
DRSSTKNRRYGIKKNS
>Mature_95_residues
TIFIGNLSWNTEEKDLKDLFNTYGEVTKCMIPLERNSRRKRGFGFVEMTSESSEKTAIDDLQDVEWMGREIRVYKAEQRD
RSSTKNRRYGIKKNS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI55956921, Length=58, Percent_Identity=44.8275862068966, Blast_Score=63, Evalue=5e-11,
Organism=Homo sapiens, GI55956919, Length=58, Percent_Identity=44.8275862068966, Blast_Score=63, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17508587, Length=81, Percent_Identity=35.8024691358025, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI281364532, Length=85, Percent_Identity=35.2941176470588, Blast_Score=62, Evalue=9e-11,
Organism=Drosophila melanogaster, GI281364530, Length=85, Percent_Identity=35.2941176470588, Blast_Score=62, Evalue=9e-11,
Organism=Drosophila melanogaster, GI24582366, Length=85, Percent_Identity=35.2941176470588, Blast_Score=62, Evalue=9e-11,
Organism=Drosophila melanogaster, GI24582368, Length=85, Percent_Identity=35.2941176470588, Blast_Score=62, Evalue=9e-11,
Organism=Drosophila melanogaster, GI17136728, Length=85, Percent_Identity=35.2941176470588, Blast_Score=62, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 11362; Mature: 11231

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIFIGNLSWNTEEKDLKDLFNTYGEVTKCMIPLERNSRRKRGFGFVEMTSESSEKTAID
CEEEECCCCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCEEEECCCCCCCHHHH
DLQDVEWMGREIRVYKAEQRDRSSTKNRRYGIKKNS
HHHHHHHCCCEEEEEECCHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TIFIGNLSWNTEEKDLKDLFNTYGEVTKCMIPLERNSRRKRGFGFVEMTSESSEKTAID
EEEECCCCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCEEEECCCCCCCHHHH
DLQDVEWMGREIRVYKAEQRDRSSTKNRRYGIKKNS
HHHHHHHCCCEEEEEECCHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]