| Definition | Prochlorococcus marinus str. MIT 9515, complete genome. |
|---|---|
| Accession | NC_008817 |
| Length | 1,704,176 |
Click here to switch to the map view.
The map label for this gene is wza [H]
Identifier: 123966618
GI number: 123966618
Start: 1221308
End: 1222405
Strand: Reverse
Name: wza [H]
Synonym: P9515_13851
Alternate gene names: 123966618
Gene position: 1222405-1221308 (Counterclockwise)
Preceding gene: 123966625
Following gene: 123966616
Centisome position: 71.73
GC content: 30.51
Gene sequence:
>1098_bases ATGAATAAATTTTTAAGAAAATTATTTTTTTTAAAGTTAGGTCTAATAACTACTATATTGCCTTTCAATCCTATACAAAA TTTGCATAGTGAGACATTAAATAAATCAGTTGAAGATAATATAAATGAAAAAATTAATTTACAAGAGGATCCATATATTC TAGGCCCTGGTGATGAATTGAGACTTGCTGTTTTGGATTCAGATATATCATCTGGAGCATATACCATTCTTAATGATGGA ACTATAAACATTCCTTTGGCAGGTGATGTTTCTTTGAAAGGAAAAACTATAAAAGAGGCAAATTCTGAAATTAAACAAAG GCTTAAGAAACAACTAATAGAGCCGGAAGTTTCTATTCAAATTATAAAGCCTAGGCCGATGACGGTTTTTGTTCTGGGTG AGGTTGATAGGCCAGGTATATATACTTTAAATATTTCTGGAATTACATCTGGTATTGATTCCTCCGGTTCAAGTATTTCA GGAATGCCTACTCTAATAAAGGCAATTCAAAAAGCTGGTGGTATAACTCAATCAGCAAATCTTAAAGAAGTAGAATTAAC AAGATTGCTACCTGGCAATAAGAATGAATATAAAACTTCAAAACTTAATCTGATTAATCTGATTTTTAAAGGAGCTAGAA ATAATAACCCTTTTCTTTTTGATGGAGATATTATCAAGTTAAAAAAATCGACAGTAGACCCTACAAAGCGAATTGAAACC ATTACTTATAATAATTTATCGCCAAATCAAATTAAGATAAGTGTAATTGGAGAAGTATTAAATCCAGGGAGATTGCAGTT AGACTCAAATACCCCTTTATTACAATCAATTTTAGAGGCTGGTGGACCAATAAATAGTAGATCCTCAAAAACAAATGTTG ATTTGTTTAGAGTTAATAGAGATGGGACTGCTTCTCATAAAAAGTTCAAATTGGACTTTAAATCGGGAATATCTCCAAGT AATCCATTGCTAAAAAATGGAGATGTAGTAAGAGTTAGAAGAAATTTAATAACTAAAGCCTCGGATTCTTTGGATTCCAT TGCAAGACCTCTTTCAAGTGTAGTAACTGTTTATTCTTTATTTAAAATAATTGATTAA
Upstream 100 bases:
>100_bases TTTTGGATGTGTTATTCAAAACTAAAAAAGATTTTTATTAGGCTTATTATGTCATATAATAGGTTTGTTTACTTATAAAT AAGCATTAAAATATTTATTA
Downstream 100 bases:
>100_bases AATTTGAATAACTAAAATAAATGATTAGATACATTTTAGATCTTAAGATTATATTCTAGTTATCAACTTTGTTTTAAATT TGAAATTAAACTCTAGAATA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 365; Mature: 365
Protein sequence:
>365_residues MNKFLRKLFFLKLGLITTILPFNPIQNLHSETLNKSVEDNINEKINLQEDPYILGPGDELRLAVLDSDISSGAYTILNDG TINIPLAGDVSLKGKTIKEANSEIKQRLKKQLIEPEVSIQIIKPRPMTVFVLGEVDRPGIYTLNISGITSGIDSSGSSIS GMPTLIKAIQKAGGITQSANLKEVELTRLLPGNKNEYKTSKLNLINLIFKGARNNNPFLFDGDIIKLKKSTVDPTKRIET ITYNNLSPNQIKISVIGEVLNPGRLQLDSNTPLLQSILEAGGPINSRSSKTNVDLFRVNRDGTASHKKFKLDFKSGISPS NPLLKNGDVVRVRRNLITKASDSLDSIARPLSSVVTVYSLFKIID
Sequences:
>Translated_365_residues MNKFLRKLFFLKLGLITTILPFNPIQNLHSETLNKSVEDNINEKINLQEDPYILGPGDELRLAVLDSDISSGAYTILNDG TINIPLAGDVSLKGKTIKEANSEIKQRLKKQLIEPEVSIQIIKPRPMTVFVLGEVDRPGIYTLNISGITSGIDSSGSSIS GMPTLIKAIQKAGGITQSANLKEVELTRLLPGNKNEYKTSKLNLINLIFKGARNNNPFLFDGDIIKLKKSTVDPTKRIET ITYNNLSPNQIKISVIGEVLNPGRLQLDSNTPLLQSILEAGGPINSRSSKTNVDLFRVNRDGTASHKKFKLDFKSGISPS NPLLKNGDVVRVRRNLITKASDSLDSIARPLSSVVTVYSLFKIID >Mature_365_residues MNKFLRKLFFLKLGLITTILPFNPIQNLHSETLNKSVEDNINEKINLQEDPYILGPGDELRLAVLDSDISSGAYTILNDG TINIPLAGDVSLKGKTIKEANSEIKQRLKKQLIEPEVSIQIIKPRPMTVFVLGEVDRPGIYTLNISGITSGIDSSGSSIS GMPTLIKAIQKAGGITQSANLKEVELTRLLPGNKNEYKTSKLNLINLIFKGARNNNPFLFDGDIIKLKKSTVDPTKRIET ITYNNLSPNQIKISVIGEVLNPGRLQLDSNTPLLQSILEAGGPINSRSSKTNVDLFRVNRDGTASHKKFKLDFKSGISPS NPLLKNGDVVRVRRNLITKASDSLDSIARPLSSVVTVYSLFKIID
Specific function: Involved in the biosynthesis of amylovoran which functions as a virulence factor. Might be involved in the translocation of polysaccharides across the outer membrane [H]
COG id: COG1596
COG function: function code M; Periplasmic protein involved in polysaccharide export
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the BexD/CtrA/VexA family [H]
Homologues:
Organism=Escherichia coli, GI1788376, Length=259, Percent_Identity=26.2548262548263, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1787218, Length=301, Percent_Identity=24.9169435215947, Blast_Score=68, Evalue=8e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003715 - InterPro: IPR019554 [H]
Pfam domain/function: PF02563 Poly_export; PF10531 SLBB [H]
EC number: NA
Molecular weight: Translated: 40100; Mature: 40100
Theoretical pI: Translated: 10.27; Mature: 10.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKFLRKLFFLKLGLITTILPFNPIQNLHSETLNKSVEDNINEKINLQEDPYILGPGDEL CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHCCCCCCCCCCCCEEECCCCCE RLAVLDSDISSGAYTILNDGTINIPLAGDVSLKGKTIKEANSEIKQRLKKQLIEPEVSIQ EEEEEECCCCCCEEEEEECCEEEEEECCCCEECCCHHHHHHHHHHHHHHHHHCCCCCEEE IIKPRPMTVFVLGEVDRPGIYTLNISGITSGIDSSGSSISGMPTLIKAIQKAGGITQSAN EECCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC LKEVELTRLLPGNKNEYKTSKLNLINLIFKGARNNNPFLFDGDIIKLKKSTVDPTKRIET CCEEEEEECCCCCCCCCCHHHHHHEEEEEECCCCCCCEEECCCEEEEECCCCCHHHHEEE ITYNNLSPNQIKISVIGEVLNPGRLQLDSNTPLLQSILEAGGPINSRSSKTNVDLFRVNR EEECCCCCCEEEEEEEECCCCCCEEEECCCCHHHHHHHHCCCCCCCCCCCCCEEEEEECC DGTASHKKFKLDFKSGISPSNPLLKNGDVVRVRRNLITKASDSLDSIARPLSSVVTVYSL CCCCCCEEEEEEHHCCCCCCCCCCCCCCEEEEHHHHHHHCCCHHHHHHHHHHHHHHHHHH FKIID HHHCC >Mature Secondary Structure MNKFLRKLFFLKLGLITTILPFNPIQNLHSETLNKSVEDNINEKINLQEDPYILGPGDEL CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHCCCCCCCCCCCCEEECCCCCE RLAVLDSDISSGAYTILNDGTINIPLAGDVSLKGKTIKEANSEIKQRLKKQLIEPEVSIQ EEEEEECCCCCCEEEEEECCEEEEEECCCCEECCCHHHHHHHHHHHHHHHHHCCCCCEEE IIKPRPMTVFVLGEVDRPGIYTLNISGITSGIDSSGSSISGMPTLIKAIQKAGGITQSAN EECCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC LKEVELTRLLPGNKNEYKTSKLNLINLIFKGARNNNPFLFDGDIIKLKKSTVDPTKRIET CCEEEEEECCCCCCCCCCHHHHHHEEEEEECCCCCCCEEECCCEEEEECCCCCHHHHEEE ITYNNLSPNQIKISVIGEVLNPGRLQLDSNTPLLQSILEAGGPINSRSSKTNVDLFRVNR EEECCCCCCEEEEEEEECCCCCCEEEECCCCHHHHHHHHCCCCCCCCCCCCCEEEEEECC DGTASHKKFKLDFKSGISPSNPLLKNGDVVRVRRNLITKASDSLDSIARPLSSVVTVYSL CCCCCCEEEEEEHHCCCCCCCCCCCCCCEEEEHHHHHHHCCCHHHHHHHHHHHHHHHHHH FKIID HHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7596293 [H]