| Definition | Prochlorococcus marinus str. MIT 9515, complete genome. |
|---|---|
| Accession | NC_008817 |
| Length | 1,704,176 |
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The map label for this gene is arnT [H]
Identifier: 123966582
GI number: 123966582
Start: 1182730
End: 1184559
Strand: Reverse
Name: arnT [H]
Synonym: P9515_13491
Alternate gene names: 123966582
Gene position: 1184559-1182730 (Counterclockwise)
Preceding gene: 123966583
Following gene: 123966576
Centisome position: 69.51
GC content: 32.3
Gene sequence:
>1830_bases ATGATACTTTTAAAGTCTGAAAAAAGATTATTTATTAACTCTAAAAAAAGGTTATTTACTTTTTTAATAATTTTGGTATT TGGAATAATAATTTTTCTTTTCGGTTTAGGCTCTACCGGATTAGTGGATGAAACCCCTCCTCTTTTTGCAGCGGCCGGGA AAGCAATGAGCGAATCAGGTGATTGGTTAACCCCAAAAGTAAATGGGATTTTACGTTTTGATAAGCCACCCCTTATATAT TGGCTAATGGGCTTGTTCTATTCACTACCCAAAAACGAATTATGGGATAGCTTTGGAACAATTGCAGCAAGACTTCCTTC AGCATTGGCTTCATTATTTTTGATGCTAATAATTGGGGATACAATTTATTGTTGGCCTCAAAAGGGTGTAAGAAAATCAT CAACTCCGATAGTGGCCTCTTTAGGATTTGCCTTGTCTCCATTAATAATCGTTTGGAGCAGAACTGCTGTAAGTGATGCT TTATTATGTGGAACTTTAGGGATAAGCCTTCTTTTGTTTTGGAGAAGAATGGCTAGTAATAAAAAAGATAATTGTATATC TCCTTGGGTTTTTATGGGGCTCGCGATTTTAACCAAAGGACCAGTAGCTTTTGTTCTTGCCACTTTGACTATTTCATCTT TTTTGTTCACTCAAAAGAATTGGAAGAAGTTGCTTGACAAAATAAACCTTAAAAAAGGAGTTTTAGTTACAGTTTTGATA AGTTTACCTTGGTATGTTTTAGAGCTGATAAAGGAAGGTAAACCGTTTTGGGATAGTTTTTTTGGATATCATAATTTCCA GAGATATACATCAGTAGTTAATAATCATTCAGAACCTATTTGGTTTTTTTTATACATAATGGTTGTAGGATCATTACCTT TTACTCCTTTTTTATTTCACGGAATATTAGAGGCTTATAAAGACTTAATAACTAGTTTAAAAAAAGGTTGCATACCTTCA GAAAGTTTATTTATTTATTGTTTATGTTGGTTAGGTTCAGTATTTGTTTTTTTCAGCATTTCTGCAACAAAACTTCCTAG CTACTGGCTCCCTGCAATTCCAGCAGCGGCAATTTTGGTAAGTAATAGTTACACGAAAATTCAAAATCAAAAAAAAGTAT TTTCATCTTTGTGGATTATTAATCTTCTAATTCTGCTTGGGTTATCAATAGCCTTCTTTCTATCAAATATTTGGTTGGAT GCAATAAATGATCCTGAGATGCCAAATCTTGCTTCAAATTTATTGAGTACTGGAATAATACTTAAGGCAAGATTGTTTTT CGTTGCCTTTACAATTATTGGAATTGTTTTGTTTGTCTTAAGATCTCCAAAGACTCTTATTTATCTTCAAATAATATTCT TTATAGGGCAAGCCTTTTTAATGCCACCAATTAGGAAATTAGGAGACACCTCTAGGCAATTACCCTTACGAAATATTTCT AAACAAATTCTAAATTCTCGTGAGGAAGGTGAAACTCTTGCAATGATTGGAATTAGAAAACCCTCATTGCATTTCTACAC TAAACAGATTGTTTTTTATGAATCTAGTGCTGCGGAGGGAGTAATTAATTTGTTCGAGAGATTTAAATTTGAAAGAAGGA CTAATTTTCAAGATAAACCAAACTATGAACATGAATACTTTTTGGTTGTAATAGATAAATATTCAGCTAAAAAAGAGCAT TGGTCAAATATGAAACATCAAAAATTAGGTTCTCATGGAATTTATCATCTATGGAGGATCAAAAAAAGTGAATTGAATGC TCAATCAATAGATTTGCTAAATGATGGTTTTGAGGCTAACTGGAGAAAAAAACGAGTCGAAAAATTTTAA
Upstream 100 bases:
>100_bases AATGGGTTGAGGATAATGCTTCCTCAAATATATTTACAAGTAAAGTTGTGAACTGGCTAAATACAGTTATTAAAGAATAT CAATTTAAAAATCATATTTA
Downstream 100 bases:
>100_bases CAAAGCTTTTTTTTAAGCATTTCATTCTTAAGGTCTTTCAAACTACATTTATTTGGAATTTCTACATTGTTTAAATTATC TAATAACTCTAGGTCTACGA
Product: glycosyltransferase
Products: NA
Alternate protein names: 4-amino-4-deoxy-L-arabinose lipid A transferase; Lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase; Undecaprenyl phosphate-alpha-L-Ara4N transferase [H]
Number of amino acids: Translated: 609; Mature: 609
Protein sequence:
>609_residues MILLKSEKRLFINSKKRLFTFLIILVFGIIIFLFGLGSTGLVDETPPLFAAAGKAMSESGDWLTPKVNGILRFDKPPLIY WLMGLFYSLPKNELWDSFGTIAARLPSALASLFLMLIIGDTIYCWPQKGVRKSSTPIVASLGFALSPLIIVWSRTAVSDA LLCGTLGISLLLFWRRMASNKKDNCISPWVFMGLAILTKGPVAFVLATLTISSFLFTQKNWKKLLDKINLKKGVLVTVLI SLPWYVLELIKEGKPFWDSFFGYHNFQRYTSVVNNHSEPIWFFLYIMVVGSLPFTPFLFHGILEAYKDLITSLKKGCIPS ESLFIYCLCWLGSVFVFFSISATKLPSYWLPAIPAAAILVSNSYTKIQNQKKVFSSLWIINLLILLGLSIAFFLSNIWLD AINDPEMPNLASNLLSTGIILKARLFFVAFTIIGIVLFVLRSPKTLIYLQIIFFIGQAFLMPPIRKLGDTSRQLPLRNIS KQILNSREEGETLAMIGIRKPSLHFYTKQIVFYESSAAEGVINLFERFKFERRTNFQDKPNYEHEYFLVVIDKYSAKKEH WSNMKHQKLGSHGIYHLWRIKKSELNAQSIDLLNDGFEANWRKKRVEKF
Sequences:
>Translated_609_residues MILLKSEKRLFINSKKRLFTFLIILVFGIIIFLFGLGSTGLVDETPPLFAAAGKAMSESGDWLTPKVNGILRFDKPPLIY WLMGLFYSLPKNELWDSFGTIAARLPSALASLFLMLIIGDTIYCWPQKGVRKSSTPIVASLGFALSPLIIVWSRTAVSDA LLCGTLGISLLLFWRRMASNKKDNCISPWVFMGLAILTKGPVAFVLATLTISSFLFTQKNWKKLLDKINLKKGVLVTVLI SLPWYVLELIKEGKPFWDSFFGYHNFQRYTSVVNNHSEPIWFFLYIMVVGSLPFTPFLFHGILEAYKDLITSLKKGCIPS ESLFIYCLCWLGSVFVFFSISATKLPSYWLPAIPAAAILVSNSYTKIQNQKKVFSSLWIINLLILLGLSIAFFLSNIWLD AINDPEMPNLASNLLSTGIILKARLFFVAFTIIGIVLFVLRSPKTLIYLQIIFFIGQAFLMPPIRKLGDTSRQLPLRNIS KQILNSREEGETLAMIGIRKPSLHFYTKQIVFYESSAAEGVINLFERFKFERRTNFQDKPNYEHEYFLVVIDKYSAKKEH WSNMKHQKLGSHGIYHLWRIKKSELNAQSIDLLNDGFEANWRKKRVEKF >Mature_609_residues MILLKSEKRLFINSKKRLFTFLIILVFGIIIFLFGLGSTGLVDETPPLFAAAGKAMSESGDWLTPKVNGILRFDKPPLIY WLMGLFYSLPKNELWDSFGTIAARLPSALASLFLMLIIGDTIYCWPQKGVRKSSTPIVASLGFALSPLIIVWSRTAVSDA LLCGTLGISLLLFWRRMASNKKDNCISPWVFMGLAILTKGPVAFVLATLTISSFLFTQKNWKKLLDKINLKKGVLVTVLI SLPWYVLELIKEGKPFWDSFFGYHNFQRYTSVVNNHSEPIWFFLYIMVVGSLPFTPFLFHGILEAYKDLITSLKKGCIPS ESLFIYCLCWLGSVFVFFSISATKLPSYWLPAIPAAAILVSNSYTKIQNQKKVFSSLWIINLLILLGLSIAFFLSNIWLD AINDPEMPNLASNLLSTGIILKARLFFVAFTIIGIVLFVLRSPKTLIYLQIIFFIGQAFLMPPIRKLGDTSRQLPLRNIS KQILNSREEGETLAMIGIRKPSLHFYTKQIVFYESSAAEGVINLFERFKFERRTNFQDKPNYEHEYFLVVIDKYSAKKEH WSNMKHQKLGSHGIYHLWRIKKSELNAQSIDLLNDGFEANWRKKRVEKF
Specific function: Catalyzes the transfer of the L-Ara4N moiety of the glycolipid undecaprenyl phosphate-alpha-L-Ara4N to lipid A. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]
COG id: COG1807
COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 83 family [H]
Homologues:
Organism=Escherichia coli, GI1788591, Length=324, Percent_Identity=26.8518518518519, Blast_Score=91, Evalue=1e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022839 - InterPro: IPR003342 [H]
Pfam domain/function: PF02366 PMT [H]
EC number: =2.4.2.43 [H]
Molecular weight: Translated: 69531; Mature: 69531
Theoretical pI: Translated: 10.26; Mature: 10.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MILLKSEKRLFINSKKRLFTFLIILVFGIIIFLFGLGSTGLVDETPPLFAAAGKAMSESG CEEECCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHCCCC DWLTPKVNGILRFDKPPLIYWLMGLFYSLPKNELWDSFGTIAARLPSALASLFLMLIIGD CEECCCCCCEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC TIYCWPQKGVRKSSTPIVASLGFALSPLIIVWSRTAVSDALLCGTLGISLLLFWRRMASN CEEECCCCCCCCCCCCHHHHHHHHHHHHHHEECHHHHHHHHHHHHHHHHHHHHHHHHHCC KKDNCISPWVFMGLAILTKGPVAFVLATLTISSFLFTQKNWKKLLDKINLKKGVLVTVLI CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH SLPWYVLELIKEGKPFWDSFFGYHNFQRYTSVVNNHSEPIWFFLYIMVVGSLPFTPFLFH HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHH GILEAYKDLITSLKKGCIPSESLFIYCLCWLGSVFVFFSISATKLPSYWLPAIPAAAILV HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHC SNSYTKIQNQKKVFSSLWIINLLILLGLSIAFFLSNIWLDAINDPEMPNLASNLLSTGII CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH LKARLFFVAFTIIGIVLFVLRSPKTLIYLQIIFFIGQAFLMPPIRKLGDTSRQLPLRNIS HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHCCCHHCCCHHHHH KQILNSREEGETLAMIGIRKPSLHFYTKQIVFYESSAAEGVINLFERFKFERRTNFQDKP HHHHCCCCCCCEEEEEECCCCCHHHEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCC NYEHEYFLVVIDKYSAKKEHWSNMKHQKLGSHGIYHLWRIKKSELNAQSIDLLNDGFEAN CCCCEEEEEEEECCCCHHHHHCCCHHHHCCCCCCCHHHEEHHHHCCHHHHHHHCCCCCCC WRKKRVEKF HHHHHHCCC >Mature Secondary Structure MILLKSEKRLFINSKKRLFTFLIILVFGIIIFLFGLGSTGLVDETPPLFAAAGKAMSESG CEEECCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHCCCC DWLTPKVNGILRFDKPPLIYWLMGLFYSLPKNELWDSFGTIAARLPSALASLFLMLIIGD CEECCCCCCEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC TIYCWPQKGVRKSSTPIVASLGFALSPLIIVWSRTAVSDALLCGTLGISLLLFWRRMASN CEEECCCCCCCCCCCCHHHHHHHHHHHHHHEECHHHHHHHHHHHHHHHHHHHHHHHHHCC KKDNCISPWVFMGLAILTKGPVAFVLATLTISSFLFTQKNWKKLLDKINLKKGVLVTVLI CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH SLPWYVLELIKEGKPFWDSFFGYHNFQRYTSVVNNHSEPIWFFLYIMVVGSLPFTPFLFH HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHH GILEAYKDLITSLKKGCIPSESLFIYCLCWLGSVFVFFSISATKLPSYWLPAIPAAAILV HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHC SNSYTKIQNQKKVFSSLWIINLLILLGLSIAFFLSNIWLDAINDPEMPNLASNLLSTGII CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH LKARLFFVAFTIIGIVLFVLRSPKTLIYLQIIFFIGQAFLMPPIRKLGDTSRQLPLRNIS HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHCCCHHCCCHHHHH KQILNSREEGETLAMIGIRKPSLHFYTKQIVFYESSAAEGVINLFERFKFERRTNFQDKP HHHHCCCCCCCEEEEEECCCCCHHHEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCC NYEHEYFLVVIDKYSAKKEHWSNMKHQKLGSHGIYHLWRIKKSELNAQSIDLLNDGFEAN CCCCEEEEEEEECCCCHHHHHCCCHHHHCCCCCCCHHHEEHHHHCCHHHHHHHCCCCCCC WRKKRVEKF HHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA