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The map label for this gene is ycf4

Identifier: 123966556

GI number: 123966556

Start: 1161440

End: 1161997

Strand: Reverse

Name: ycf4

Synonym: P9515_13231

Alternate gene names: 123966556

Gene position: 1161997-1161440 (Counterclockwise)

Preceding gene: 123966559

Following gene: 123966555

Centisome position: 68.19

GC content: 31.54

Gene sequence:

>558_bases
ATGGAATCAAATCTTTCTTCTTTCAATAAAATTGAACAACAAATTAATGGGTCAAGAAAAATATCAAATTACCTTATCGG
TGGAATGTTAACCATTGGTGGTATAGGTTTTATCTTGGCTTCGATATCTAGTTACACAGGAAGAGACTTATTGCCTTTAG
GTAATCCTTCATCCTTACTTTTTATACCTCAAGGAATAATAATGGGGGCTTATGGAGTAATAGCTAATTTGTTAAATATA
TATTTATGGTATTTGGTCTTTATAAACTTCGGTTCAGGTTACAACTCTTTTGATAAAGTTTCCCAATCTGTTGAGATTAA
AAGAAAAGGATTATTTAAGGATATTGAAGTCAAACTAAATTTCGATGAAATTAAATCTGTAAAACTTGATATTAGTGAGG
GATTTAATCCAAGAAGAAGAATCGCACTAGTTCTTAAAGGGAGAAAAAAAGCACTTCCTCTAAGCGGAGCAGGTGAATTA
AAACCACTACTTCAAGTTGAGGAGGAAGGTGCAAGATTAGCTAAATTTTTAAATGTAAATTTGGAGGGTTTGAAATAG

Upstream 100 bases:

>100_bases
CGCCTTGTAAAGCTTTCCTGACTTTTTGCTTTGAAAATAAGTAATAATACTTCAGGTGATTTGTTAAATTAATAAAATGT
GCCTTTAGGATAAAAATATT

Downstream 100 bases:

>100_bases
GAAGATTTTATTTATTAAAAACACTTTTGATTTTTAAAGTGTTTTTGTTTTTAATTACAAGTTGCAGTTATAGAAGTTCT
TTTGATTCAAATTATTATTG

Product: photosystem I assembly protein Ycf4

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MESNLSSFNKIEQQINGSRKISNYLIGGMLTIGGIGFILASISSYTGRDLLPLGNPSSLLFIPQGIIMGAYGVIANLLNI
YLWYLVFINFGSGYNSFDKVSQSVEIKRKGLFKDIEVKLNFDEIKSVKLDISEGFNPRRRIALVLKGRKKALPLSGAGEL
KPLLQVEEEGARLAKFLNVNLEGLK

Sequences:

>Translated_185_residues
MESNLSSFNKIEQQINGSRKISNYLIGGMLTIGGIGFILASISSYTGRDLLPLGNPSSLLFIPQGIIMGAYGVIANLLNI
YLWYLVFINFGSGYNSFDKVSQSVEIKRKGLFKDIEVKLNFDEIKSVKLDISEGFNPRRRIALVLKGRKKALPLSGAGEL
KPLLQVEEEGARLAKFLNVNLEGLK
>Mature_185_residues
MESNLSSFNKIEQQINGSRKISNYLIGGMLTIGGIGFILASISSYTGRDLLPLGNPSSLLFIPQGIIMGAYGVIANLLNI
YLWYLVFINFGSGYNSFDKVSQSVEIKRKGLFKDIEVKLNFDEIKSVKLDISEGFNPRRRIALVLKGRKKALPLSGAGEL
KPLLQVEEEGARLAKFLNVNLEGLK

Specific function: Seems to be required for the assembly of the photosystem I complex

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ycf4 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YCF4_PROM5 (A2BXL9)

Other databases:

- EMBL:   CP000552
- RefSeq:   YP_001011637.1
- STRING:   A2BXL9
- GeneID:   4718843
- GenomeReviews:   CP000552_GR
- KEGG:   pmc:P9515_13231
- eggNOG:   NOG06447
- HOGENOM:   HBG439339
- OMA:   LTRVGQP
- ProtClustDB:   PRK02542
- BioCyc:   PMAR167542:P9515ORF_1382-MONOMER
- GO:   GO:0015979
- HAMAP:   MF_00437
- InterPro:   IPR003359
- ProDom:   PD003698

Pfam domain/function: PF02392 Ycf4

EC number: NA

Molecular weight: Translated: 20413; Mature: 20413

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1a38b4c0)-; HASH(0x1a571798)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESNLSSFNKIEQQINGSRKISNYLIGGMLTIGGIGFILASISSYTGRDLLPLGNPSSLL
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEE
FIPQGIIMGAYGVIANLLNIYLWYLVFINFGSGYNSFDKVSQSVEIKRKGLFKDIEVKLN
EECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEC
FDEIKSVKLDISEGFNPRRRIALVLKGRKKALPLSGAGELKPLLQVEEEGARLAKFLNVN
HHHHHEEEEECCCCCCHHHEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
LEGLK
CCCCH
>Mature Secondary Structure
MESNLSSFNKIEQQINGSRKISNYLIGGMLTIGGIGFILASISSYTGRDLLPLGNPSSLL
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEE
FIPQGIIMGAYGVIANLLNIYLWYLVFINFGSGYNSFDKVSQSVEIKRKGLFKDIEVKLN
EECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEC
FDEIKSVKLDISEGFNPRRRIALVLKGRKKALPLSGAGELKPLLQVEEEGARLAKFLNVN
HHHHHEEEEECCCCCCHHHEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
LEGLK
CCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA