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The map label for this gene is yhdX [H]

Identifier: 123966464

GI number: 123966464

Start: 1086381

End: 1087274

Strand: Reverse

Name: yhdX [H]

Synonym: P9515_12311

Alternate gene names: 123966464

Gene position: 1087274-1086381 (Counterclockwise)

Preceding gene: 123966465

Following gene: 123966463

Centisome position: 63.8

GC content: 29.19

Gene sequence:

>894_bases
ATGAGTAAAAATAAAAAAATAGTTCTTCAGTTTGTTTTGATGTTTGCCGTTCTTGGTTTTTTAGGGATATTAATTAATAA
TTTAATGATTAACCTTAAAAGAACGGACATAGGATTCAAGTTTGATTGGTTAATAAAGCCAGCAAGCTTTTCTTTAGCAG
AACATTCCTTGCCCTACAGTCCTTCAGATAATTATGCATGGGCCATTTTTATTGGATGGATGAATAGCTTGAAAGTTATT
ATTTCATCTCTTATTTTAGCGACTTGTCTTGGAACATTAATAGGTTTTTTGAGAGTAGGTAAAAATTCATTTTTTAGAAT
TTTTACAGCTGGATATATTACAGTTATTAGACAGACACCACTATTAATCCAACTTATGTGTTGGTATTTTGTTGGATTTT
TGAGTATTAGAAATAATTCTTTTTTGAATGTAAGAAATATAGTGAATATTTCAAATAGAGGGATAGAGTTATTTGGACTT
AATTTCTCTTCAGAGTTTTCAGCATTATTGTTTGGTTTAAGTATATTTTCAAGTGCGTTTATTGCGGAAGTAATTAGAGG
GGGAATTCAGTCTGTCCCTTTAGGTCAATGGGAAGCATTTCGAAGTTTAGGTATTTCTGAGAAACAAGGATTTATTAAAA
TAATAATACCTCAAGCATTACCAGCCTTTATTCCAGGACTTACAAGTCAATATTTAAATCTTGCAAAAAATAGTACGCTC
GCTATAGCCGTAGGATATTCAGATATTTATGCGATAAATGATACGATAATAAACCAAACGGGAAGAGCTTTAGAGTGCTT
TATAATTTTACTTTTCAGTTTTTTAATCCTTAATTTATTAATAACAAAAGTAATGGAAATTATTGATAAATCAATAATGA
AAAAAAGGATATAA

Upstream 100 bases:

>100_bases
GACAGTGATGTGCCTATTCCAAGAGGATTAAATAAAATTTATAGTAAAGGTGGTTTGCATATCTCTCCACCATTTAATTA
ATTTCAACATATGTTGAAGA

Downstream 100 bases:

>100_bases
ATTATTAATGAATAATTTAAATACACATTCATTTAAAAAACTTAAAAAATTTTTAAAATCAAAACCAAAATATAATTTTT
TCAATTTTATATTTTTTGTG

Product: ABC transporter for amino acids, membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MSKNKKIVLQFVLMFAVLGFLGILINNLMINLKRTDIGFKFDWLIKPASFSLAEHSLPYSPSDNYAWAIFIGWMNSLKVI
ISSLILATCLGTLIGFLRVGKNSFFRIFTAGYITVIRQTPLLIQLMCWYFVGFLSIRNNSFLNVRNIVNISNRGIELFGL
NFSSEFSALLFGLSIFSSAFIAEVIRGGIQSVPLGQWEAFRSLGISEKQGFIKIIIPQALPAFIPGLTSQYLNLAKNSTL
AIAVGYSDIYAINDTIINQTGRALECFIILLFSFLILNLLITKVMEIIDKSIMKKRI

Sequences:

>Translated_297_residues
MSKNKKIVLQFVLMFAVLGFLGILINNLMINLKRTDIGFKFDWLIKPASFSLAEHSLPYSPSDNYAWAIFIGWMNSLKVI
ISSLILATCLGTLIGFLRVGKNSFFRIFTAGYITVIRQTPLLIQLMCWYFVGFLSIRNNSFLNVRNIVNISNRGIELFGL
NFSSEFSALLFGLSIFSSAFIAEVIRGGIQSVPLGQWEAFRSLGISEKQGFIKIIIPQALPAFIPGLTSQYLNLAKNSTL
AIAVGYSDIYAINDTIINQTGRALECFIILLFSFLILNLLITKVMEIIDKSIMKKRI
>Mature_296_residues
SKNKKIVLQFVLMFAVLGFLGILINNLMINLKRTDIGFKFDWLIKPASFSLAEHSLPYSPSDNYAWAIFIGWMNSLKVII
SSLILATCLGTLIGFLRVGKNSFFRIFTAGYITVIRQTPLLIQLMCWYFVGFLSIRNNSFLNVRNIVNISNRGIELFGLN
FSSEFSALLFGLSIFSSAFIAEVIRGGIQSVPLGQWEAFRSLGISEKQGFIKIIIPQALPAFIPGLTSQYLNLAKNSTLA
IAVGYSDIYAINDTIINQTGRALECFIILLFSFLILNLLITKVMEIIDKSIMKKRI

Specific function: Probably part of the binding-protein-dependent transport system ydhWXYZ for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4597

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI48994930, Length=135, Percent_Identity=48.1481481481481, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1786874, Length=245, Percent_Identity=25.3061224489796, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1786873, Length=243, Percent_Identity=26.3374485596708, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1788226, Length=207, Percent_Identity=27.536231884058, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787087, Length=130, Percent_Identity=29.2307692307692, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87082239, Length=132, Percent_Identity=31.8181818181818, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788645, Length=244, Percent_Identity=24.1803278688525, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787030, Length=204, Percent_Identity=26.4705882352941, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33310; Mature: 33179

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKNKKIVLQFVLMFAVLGFLGILINNLMINLKRTDIGFKFDWLIKPASFSLAEHSLPYS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEEEECCCCHHHHHCCCCCC
PSDNYAWAIFIGWMNSLKVIISSLILATCLGTLIGFLRVGKNSFFRIFTAGYITVIRQTP
CCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEHHHHHHHHHHHCCH
LLIQLMCWYFVGFLSIRNNSFLNVRNIVNISNRGIELFGLNFSSEFSALLFGLSIFSSAF
HHHHHHHHHHHHHHHHCCCCEEEHHHHEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHH
IAEVIRGGIQSVPLGQWEAFRSLGISEKQGFIKIIIPQALPAFIPGLTSQYLNLAKNSTL
HHHHHHCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECHHHHHHHCCHHHHHHHHHCCCEE
AIAVGYSDIYAINDTIINQTGRALECFIILLFSFLILNLLITKVMEIIDKSIMKKRI
EEEECCCCEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SKNKKIVLQFVLMFAVLGFLGILINNLMINLKRTDIGFKFDWLIKPASFSLAEHSLPYS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEEEECCCCHHHHHCCCCCC
PSDNYAWAIFIGWMNSLKVIISSLILATCLGTLIGFLRVGKNSFFRIFTAGYITVIRQTP
CCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEHHHHHHHHHHHCCH
LLIQLMCWYFVGFLSIRNNSFLNVRNIVNISNRGIELFGLNFSSEFSALLFGLSIFSSAF
HHHHHHHHHHHHHHHHCCCCEEEHHHHEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHH
IAEVIRGGIQSVPLGQWEAFRSLGISEKQGFIKIIIPQALPAFIPGLTSQYLNLAKNSTL
HHHHHHCCCCCCCCCHHHHHHHCCCCCCCCEEEEEECHHHHHHHCCHHHHHHHHHCCCEE
AIAVGYSDIYAINDTIINQTGRALECFIILLFSFLILNLLITKVMEIIDKSIMKKRI
EEEECCCCEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]