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The map label for this gene is yjfH [C]

Identifier: 123966264

GI number: 123966264

Start: 923474

End: 924523

Strand: Reverse

Name: yjfH [C]

Synonym: P9515_10311

Alternate gene names: 123966264

Gene position: 924523-923474 (Counterclockwise)

Preceding gene: 123966265

Following gene: 123966263

Centisome position: 54.25

GC content: 28.57

Gene sequence:

>1050_bases
ATGAAAAATTTTTCTAAAAATAATTATTCAAGAAAAAATAATGATAAATATTCAAGAAGATCACAATCTAAAAATCGAGA
AAAATCTAATGATTTTAAAGGTGAAAGATTTAACTCAATTAAAAATAATACTTTTGAAAGAACTAATTTAAAAAAAAGTG
ATGATTTCAAAGGTAATGAATATAATATTTTAAGATCAAAAGCAAAATCTAGAAATAATTTCATTCAACCCAAAAGAAAA
ATTTCTACAAATAATACAAAAGCAGAAAAGTATGCTGAAAATAGTTCCAAAAATTTATTAATAAATACCAATGTCAAAAC
TTTTGATGATTGGATATGGGGTAAGCATTCAGTATTTGCGACATTAAATACTGAAAGACCAATTAACAGAATTTGGTGTA
CTTCAGAAATATTTTCGTCAGAAAAATTTTTTTTGTTATTAAAGGATCTAAAATCTAAAGGTGTTTTAGTTGAAGAAGTA
TCTTGGTCACGACTTTCCCAATTAACATCCGGTGCCGTTCATCAAGGAGTTGCGTTGCAGTTAGCAACTTCTCAAACTTT
ATCTTTAGATAAATTGATTGGTATAACTAAAAGTAAGTCTAATAATCCTATTTTTGTAGCATTAGATGGCATAACTGATC
CTCATAATTTAGGAGCAATTATTAGATCTGCAGAAGCTTTTGATTGTAAAGGTATAATAATTCCTCAAAGAAGATCTGCA
GGATTAACTGGAACTGTTGCAAAAGTTGCTGCTGGAGCATTAGAACATATACCTGTAAGTAGAGTTGTGAATCTAAATAG
AGCAATAGATGAATTAAAGAAAAATGGTTTTCTAATTGTTGGATTATCAGGGGATGGGCAAATTCCTATTTCTAAATTTG
ATCAAAAGGCACCAATTGTAGTAGTTGTTGGAGCTGAAAATAAAGGAATATCTTTGCTCACGCAAAAAAAATGTGATTAC
TTGCTTAAGATACCTCTTAGAGGCAAAACTTCTAGTTTAAATGCTTCTGTAGCAGCAGCTATTTCCTTATGTTATTTGTC
AAATATTTAG

Upstream 100 bases:

>100_bases
CACCGGTTTTGAAACTTTAATTGGTTGGTTGTTTTTAAAGGACCCTAAAAGATTGTCTAAAATTTTTGAATACCTAGAGT
GTATATAACTTAATAAAACT

Downstream 100 bases:

>100_bases
TGTGACTAAACACGAAAAATTTAAAATCAGGATGAATTTATATCGTTATTTCAATATATTTATCCATTTGACTATTATTT
ATTGAATAATTACTCAAAAA

Product: RNA methyltransferase TrmH, group 3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 349; Mature: 349

Protein sequence:

>349_residues
MKNFSKNNYSRKNNDKYSRRSQSKNREKSNDFKGERFNSIKNNTFERTNLKKSDDFKGNEYNILRSKAKSRNNFIQPKRK
ISTNNTKAEKYAENSSKNLLINTNVKTFDDWIWGKHSVFATLNTERPINRIWCTSEIFSSEKFFLLLKDLKSKGVLVEEV
SWSRLSQLTSGAVHQGVALQLATSQTLSLDKLIGITKSKSNNPIFVALDGITDPHNLGAIIRSAEAFDCKGIIIPQRRSA
GLTGTVAKVAAGALEHIPVSRVVNLNRAIDELKKNGFLIVGLSGDGQIPISKFDQKAPIVVVVGAENKGISLLTQKKCDY
LLKIPLRGKTSSLNASVAAAISLCYLSNI

Sequences:

>Translated_349_residues
MKNFSKNNYSRKNNDKYSRRSQSKNREKSNDFKGERFNSIKNNTFERTNLKKSDDFKGNEYNILRSKAKSRNNFIQPKRK
ISTNNTKAEKYAENSSKNLLINTNVKTFDDWIWGKHSVFATLNTERPINRIWCTSEIFSSEKFFLLLKDLKSKGVLVEEV
SWSRLSQLTSGAVHQGVALQLATSQTLSLDKLIGITKSKSNNPIFVALDGITDPHNLGAIIRSAEAFDCKGIIIPQRRSA
GLTGTVAKVAAGALEHIPVSRVVNLNRAIDELKKNGFLIVGLSGDGQIPISKFDQKAPIVVVVGAENKGISLLTQKKCDY
LLKIPLRGKTSSLNASVAAAISLCYLSNI
>Mature_349_residues
MKNFSKNNYSRKNNDKYSRRSQSKNREKSNDFKGERFNSIKNNTFERTNLKKSDDFKGNEYNILRSKAKSRNNFIQPKRK
ISTNNTKAEKYAENSSKNLLINTNVKTFDDWIWGKHSVFATLNTERPINRIWCTSEIFSSEKFFLLLKDLKSKGVLVEEV
SWSRLSQLTSGAVHQGVALQLATSQTLSLDKLIGITKSKSNNPIFVALDGITDPHNLGAIIRSAEAFDCKGIIIPQRRSA
GLTGTVAKVAAGALEHIPVSRVVNLNRAIDELKKNGFLIVGLSGDGQIPISKFDQKAPIVVVVGAENKGISLLTQKKCDY
LLKIPLRGKTSSLNASVAAAISLCYLSNI

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI40068479, Length=213, Percent_Identity=29.5774647887324, Blast_Score=81, Evalue=1e-15,
Organism=Escherichia coli, GI1790623, Length=241, Percent_Identity=36.0995850622407, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1788935, Length=236, Percent_Identity=23.728813559322, Blast_Score=70, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17555908, Length=254, Percent_Identity=28.740157480315, Blast_Score=76, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6324775, Length=286, Percent_Identity=29.020979020979, Blast_Score=84, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004441
- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 38798; Mature: 38798

Theoretical pI: Translated: 10.66; Mature: 10.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNFSKNNYSRKNNDKYSRRSQSKNREKSNDFKGERFNSIKNNTFERTNLKKSDDFKGNE
CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCC
YNILRSKAKSRNNFIQPKRKISTNNTKAEKYAENSSKNLLINTNVKTFDDWIWGKHSVFA
HHHHHHHHHHCCCCCCCCHHCCCCCCHHHHHHCCCCCEEEEECCCCHHHHHHCCCCEEEE
TLNTERPINRIWCTSEIFSSEKFFLLLKDLKSKGVLVEEVSWSRLSQLTSGAVHQGVALQ
EECCCCCCHHEEECHHHHCCCCEEEEEEHHCCCCEEEEECCHHHHHHHHHHHHHCCEEEE
LATSQTLSLDKLIGITKSKSNNPIFVALDGITDPHNLGAIIRSAEAFDCKGIIIPQRRSA
EECCCCCCHHHHHEEECCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCEEEECCCCCC
GLTGTVAKVAAGALEHIPVSRVVNLNRAIDELKKNGFLIVGLSGDGQIPISKFDQKAPIV
CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHCCCCCCEE
VVVGAENKGISLLTQKKCDYLLKIPLRGKTSSLNASVAAAISLCYLSNI
EEECCCCCCCEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKNFSKNNYSRKNNDKYSRRSQSKNREKSNDFKGERFNSIKNNTFERTNLKKSDDFKGNE
CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCC
YNILRSKAKSRNNFIQPKRKISTNNTKAEKYAENSSKNLLINTNVKTFDDWIWGKHSVFA
HHHHHHHHHHCCCCCCCCHHCCCCCCHHHHHHCCCCCEEEEECCCCHHHHHHCCCCEEEE
TLNTERPINRIWCTSEIFSSEKFFLLLKDLKSKGVLVEEVSWSRLSQLTSGAVHQGVALQ
EECCCCCCHHEEECHHHHCCCCEEEEEEHHCCCCEEEEECCHHHHHHHHHHHHHCCEEEE
LATSQTLSLDKLIGITKSKSNNPIFVALDGITDPHNLGAIIRSAEAFDCKGIIIPQRRSA
EECCCCCCHHHHHEEECCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCEEEECCCCCC
GLTGTVAKVAAGALEHIPVSRVVNLNRAIDELKKNGFLIVGLSGDGQIPISKFDQKAPIV
CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHCCCCCCEE
VVVGAENKGISLLTQKKCDYLLKIPLRGKTSSLNASVAAAISLCYLSNI
EEECCCCCCCEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]