| Definition | Prochlorococcus marinus str. MIT 9515, complete genome. |
|---|---|
| Accession | NC_008817 |
| Length | 1,704,176 |
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The map label for this gene is recG [H]
Identifier: 123966061
GI number: 123966061
Start: 749068
End: 751524
Strand: Reverse
Name: recG [H]
Synonym: P9515_08281
Alternate gene names: 123966061
Gene position: 751524-749068 (Counterclockwise)
Preceding gene: 123966062
Following gene: 123966059
Centisome position: 44.1
GC content: 26.41
Gene sequence:
>2457_bases GTGACGAATAATAAACAATATATAAATTTAATTAAGAATTGGATTAGACCCCTTCAAAAATCACTCACACTAGAGTCAGA AAATAAATTTACTAATTTACATGGTAGAAAACAATTTTTTAATGATTATCTTTATGAATCATTAAGCAATTTAGAAAATC TTAAATTAACTGATGAATATATCAAATTATTTAGTGAATTTTCAATTAAATATTCTCAATATAATAATTTAGATAGTAAT CAGAGAAAAAGACTTGTAATTGATACTAGAAAATGTCTATTAAAATTAAGTACATCTATTGATTTAATTTACTCTAGTAA AAATACTACTAGTAATTATTCAAGATTTGCAGATTCAAATCTATCTTTATACTCAGATATTTCCTTGATAAAAAGTATAG GTAAAGTAACTAAAAAGAAACTAAACGAATTAGGTATATTTAACATAAAAGACTTAATCAATTATTTTCCACGTACTTAT TTAGATTATACAAATAGAGTAAAAATAGTTAATCTAAAACCAGATAATTTATACACTTGTATTGCAACTATTAAAAAGTT TTCTATTTATAAGAGTCAAAATAATAGTAATTTATCCATAATGAATATAGTAATTTTTGATGAGACATCATCTATTAAAG TTACAAAATTTTTTTTAGGAAAAAGATATAGATCTTATTCCTTTTATACTTCTCAGAAATCTTTATATATTCCTGGTACT AAAATAGCTATTTCTGGTAAGGTCAAACTATCTGAATATGGAAAAAATTTTATTGATCCGCAGATAGAGATTTTAAATAA TAATGATGAATCTTTTAATTTCTCTGGTAAGATTATGCCTTTATACTCCTTATCAGAATCATTTTCAAATATAAGTTTTA TCAAATTAATTAAAAAAGTAATTATTTATTCAAAAGATTATCCAGACTTACTTACTCAAAAACAAATTAGTTCATTATCT TTATTACCAAAAAGTGATTCTTTAATAAACATTCATTTACCTCCAAATCAGGATGCTTTGATTGAATCAAAAAAAAGATT GGTATTTGATGAACTATTTCTATTACAAATGAAGTTTTTATTGAGAAAGCGTAAGAATAATAAAAAATCAACTAATCGAA CATTTGCTCAAAAAAGATTTTTACTCCAAGATTTTTTAAATAAAATTCCTTTTCAATTAACAAAATCTCAGGAAAAAGTC CTTGATGAAATTAAATTAGACATATCAGATTTAACCCCTATGTCCAGACTACTTCAGGGAGATGTTGGTAGTGGTAAAAC TATTATTGCAATTGTTTCCCTTTTAATTATTCTTGAAAAAGATCAGCAAGGTGCATTAATGGTTCCTACAGAAGTACTTG CTAATCAGCACTATAAAAATTTATTAAAATATCTAAATCCACTTTCTGTTTCGGTCGAACTACTTACAGGTAACACCCCA CAAAAAAAGAGAAAAGAAATACTAATAAATTTAAAAAATGGAATGGTAGATATTCTTGTAGGTACTCATGCATTATTTGA AGATAAAGTTATTTTTAATTCATTAGGTATGGTGGTCATTGATGAACAACATAGGTTTGGGGTGACTCAAAGAAATAGAT TACTGAATAAAGGCGATAATACGAATTTGTTATCAATGACAGCCACACCAATACCAAGGACACTTGCCTTGTCACTATAT GGAGATCTAGATATTAGTCAGATTACAGAACTGCCACCAGGAAGAGTTCCAATAATTACAAAAATAATTACAGAGGATGA TTTAGATAAACTATTTTCACTTGTAGAGAATGAAATAGATAATGGAAAACAAGCTTATGTAATTTTGCCATTAATCGAAG ATTCTGAAAAAATGAATTTAAGCTCTGCAAAAAACATTTTTCAGTATTTATCAGAGGAGATCTTTTTAAAAAATAAAGTT GGACTATTACACGGGAAATTAAATTCTGATGAGAAGAATATCGTAATTAATTCATTTTTAAAAAATGAAATTAGTATTTT GGTATCCACTACAGTTATTGAAGTCGGTATTGATGTACCTAATGCTTCAATCATGATAATTTATAACTCAGAGAGATTTG GATTATCTCAGTTGCATCAGTTAAGAGGAAGAGTTGGGAGAGGCACCCATAAATCATTTTGTTACTTAATAACCTCTGAT AAAAATGGATTAGAAAACAAAAGACTAAAAGTTTTAGAAAAATCTAATGATGGTTTTTATATCGCGGAAAAAGATTTAGA GATAAGAGGTCCAGGGCAACTCTTGGGGTATAAGCAATCAGGATTACCAGATTTTGTATTGGATAACTTACCAAATAATA AGGTGTTAATTGAAAAAGCTCGAGAAGAGGCGCAGAACGTAATAAAGGATGATCCTGACTTAAGAAAAAATTTTATGTTG AAAGATTTGTTAATTGACAATTCTGATAATAAATTTGTACATGATTTCTTAAATTAA
Upstream 100 bases:
>100_bases AATTTAGATTATTAAATAAAAAACATCTATATTGGAAAAATAAGGAACTTTACCTTAAAAATTTAAAATAATAAAATCTT AAGTTTATCTCTCAGATAAA
Downstream 100 bases:
>100_bases TAATTTAATAATTGTAAATTTTAAAATATATGCAAATATGAGATCAATTAAAAAAAATATTTGAAAATTTGGAATAAAGT CCCAATTGAAGAGAATAAAG
Product: ATP-dependent DNA helicase RecG
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 818; Mature: 817
Protein sequence:
>818_residues MTNNKQYINLIKNWIRPLQKSLTLESENKFTNLHGRKQFFNDYLYESLSNLENLKLTDEYIKLFSEFSIKYSQYNNLDSN QRKRLVIDTRKCLLKLSTSIDLIYSSKNTTSNYSRFADSNLSLYSDISLIKSIGKVTKKKLNELGIFNIKDLINYFPRTY LDYTNRVKIVNLKPDNLYTCIATIKKFSIYKSQNNSNLSIMNIVIFDETSSIKVTKFFLGKRYRSYSFYTSQKSLYIPGT KIAISGKVKLSEYGKNFIDPQIEILNNNDESFNFSGKIMPLYSLSESFSNISFIKLIKKVIIYSKDYPDLLTQKQISSLS LLPKSDSLINIHLPPNQDALIESKKRLVFDELFLLQMKFLLRKRKNNKKSTNRTFAQKRFLLQDFLNKIPFQLTKSQEKV LDEIKLDISDLTPMSRLLQGDVGSGKTIIAIVSLLIILEKDQQGALMVPTEVLANQHYKNLLKYLNPLSVSVELLTGNTP QKKRKEILINLKNGMVDILVGTHALFEDKVIFNSLGMVVIDEQHRFGVTQRNRLLNKGDNTNLLSMTATPIPRTLALSLY GDLDISQITELPPGRVPIITKIITEDDLDKLFSLVENEIDNGKQAYVILPLIEDSEKMNLSSAKNIFQYLSEEIFLKNKV GLLHGKLNSDEKNIVINSFLKNEISILVSTTVIEVGIDVPNASIMIIYNSERFGLSQLHQLRGRVGRGTHKSFCYLITSD KNGLENKRLKVLEKSNDGFYIAEKDLEIRGPGQLLGYKQSGLPDFVLDNLPNNKVLIEKAREEAQNVIKDDPDLRKNFML KDLLIDNSDNKFVHDFLN
Sequences:
>Translated_818_residues MTNNKQYINLIKNWIRPLQKSLTLESENKFTNLHGRKQFFNDYLYESLSNLENLKLTDEYIKLFSEFSIKYSQYNNLDSN QRKRLVIDTRKCLLKLSTSIDLIYSSKNTTSNYSRFADSNLSLYSDISLIKSIGKVTKKKLNELGIFNIKDLINYFPRTY LDYTNRVKIVNLKPDNLYTCIATIKKFSIYKSQNNSNLSIMNIVIFDETSSIKVTKFFLGKRYRSYSFYTSQKSLYIPGT KIAISGKVKLSEYGKNFIDPQIEILNNNDESFNFSGKIMPLYSLSESFSNISFIKLIKKVIIYSKDYPDLLTQKQISSLS LLPKSDSLINIHLPPNQDALIESKKRLVFDELFLLQMKFLLRKRKNNKKSTNRTFAQKRFLLQDFLNKIPFQLTKSQEKV LDEIKLDISDLTPMSRLLQGDVGSGKTIIAIVSLLIILEKDQQGALMVPTEVLANQHYKNLLKYLNPLSVSVELLTGNTP QKKRKEILINLKNGMVDILVGTHALFEDKVIFNSLGMVVIDEQHRFGVTQRNRLLNKGDNTNLLSMTATPIPRTLALSLY GDLDISQITELPPGRVPIITKIITEDDLDKLFSLVENEIDNGKQAYVILPLIEDSEKMNLSSAKNIFQYLSEEIFLKNKV GLLHGKLNSDEKNIVINSFLKNEISILVSTTVIEVGIDVPNASIMIIYNSERFGLSQLHQLRGRVGRGTHKSFCYLITSD KNGLENKRLKVLEKSNDGFYIAEKDLEIRGPGQLLGYKQSGLPDFVLDNLPNNKVLIEKAREEAQNVIKDDPDLRKNFML KDLLIDNSDNKFVHDFLN >Mature_817_residues TNNKQYINLIKNWIRPLQKSLTLESENKFTNLHGRKQFFNDYLYESLSNLENLKLTDEYIKLFSEFSIKYSQYNNLDSNQ RKRLVIDTRKCLLKLSTSIDLIYSSKNTTSNYSRFADSNLSLYSDISLIKSIGKVTKKKLNELGIFNIKDLINYFPRTYL DYTNRVKIVNLKPDNLYTCIATIKKFSIYKSQNNSNLSIMNIVIFDETSSIKVTKFFLGKRYRSYSFYTSQKSLYIPGTK IAISGKVKLSEYGKNFIDPQIEILNNNDESFNFSGKIMPLYSLSESFSNISFIKLIKKVIIYSKDYPDLLTQKQISSLSL LPKSDSLINIHLPPNQDALIESKKRLVFDELFLLQMKFLLRKRKNNKKSTNRTFAQKRFLLQDFLNKIPFQLTKSQEKVL DEIKLDISDLTPMSRLLQGDVGSGKTIIAIVSLLIILEKDQQGALMVPTEVLANQHYKNLLKYLNPLSVSVELLTGNTPQ KKRKEILINLKNGMVDILVGTHALFEDKVIFNSLGMVVIDEQHRFGVTQRNRLLNKGDNTNLLSMTATPIPRTLALSLYG DLDISQITELPPGRVPIITKIITEDDLDKLFSLVENEIDNGKQAYVILPLIEDSEKMNLSSAKNIFQYLSEEIFLKNKVG LLHGKLNSDEKNIVINSFLKNEISILVSTTVIEVGIDVPNASIMIIYNSERFGLSQLHQLRGRVGRGTHKSFCYLITSDK NGLENKRLKVLEKSNDGFYIAEKDLEIRGPGQLLGYKQSGLPDFVLDNLPNNKVLIEKAREEAQNVIKDDPDLRKNFMLK DLLIDNSDNKFVHDFLN
Specific function: Critical role in recombination and DNA repair. Help process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3' to 5' polarity. RecG unwind branched dup
COG id: COG1200
COG function: function code LK; RecG-like helicase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI2367254, Length=688, Percent_Identity=35.4651162790698, Blast_Score=394, Evalue=1e-111, Organism=Escherichia coli, GI1787357, Length=394, Percent_Identity=36.0406091370558, Blast_Score=263, Evalue=4e-71,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR004609 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR016027 - InterPro: IPR004365 [H]
Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C; PF01336 tRNA_anti [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 93793; Mature: 93662
Theoretical pI: Translated: 9.84; Mature: 9.84
Prosite motif: PS00185 IPNS_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNNKQYINLIKNWIRPLQKSLTLESENKFTNLHGRKQFFNDYLYESLSNLENLKLTDEY CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEECHHH IKLFSEFSIKYSQYNNLDSNQRKRLVIDTRKCLLKLSTSIDLIYSSKNTTSNYSRFADSN HHHHHHHCEEEHHCCCCCCCCCCEEEEEHHHHHHHHCCCEEEEEECCCCCCHHHHHCCCC LSLYSDISLIKSIGKVTKKKLNELGIFNIKDLINYFPRTYLDYTNRVKIVNLKPDNLYTC CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHCCCCCEEEEEECCCCHHHH IATIKKFSIYKSQNNSNLSIMNIVIFDETSSIKVTKFFLGKRYRSYSFYTSQKSLYIPGT HHHHHHHHEEECCCCCCEEEEEEEEEECCCCEEEEEEHHCCHHCCEEEEECCCEEEECCC KIAISGKVKLSEYGKNFIDPQIEILNNNDESFNFSGKIMPLYSLSESFSNISFIKLIKKV EEEEECEEEHHHHCCCCCCCEEEEECCCCCCEECCCEEEEEEHHHHHHCCHHHHHHHHHH IIYSKDYPDLLTQKQISSLSLLPKSDSLINIHLPPNQDALIESKKRLVFDELFLLQMKFL HHCCCCCHHHHHHHHHHHEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH LRKRKNNKKSTNRTFAQKRFLLQDFLNKIPFQLTKSQEKVLDEIKLDISDLTPMSRLLQG HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHCCHHHCCHHHHHHCC DVGSGKTIIAIVSLLIILEKDQQGALMVPTEVLANQHYKNLLKYLNPLSVSVELLTGNTP CCCCCCHHHHHHHHHHHEECCCCCCEECCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC QKKRKEILINLKNGMVDILVGTHALFEDKVIFNSLGMVVIDEQHRFGVTQRNRLLNKGDN HHHHHHEEEEECCCEEEEEECCHHHHHCHHHHHCCCEEEEECCHHCCCHHHHHHHCCCCC TNLLSMTATPIPRTLALSLYGDLDISQITELPPGRVPIITKIITEDDLDKLFSLVENEID CCEEEEECCCCCCEEEEEEECCCCHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHCC NGKQAYVILPLIEDSEKMNLSSAKNIFQYLSEEIFLKNKVGLLHGKLNSDEKNIVINSFL CCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEHHHH KNEISILVSTTVIEVGIDVPNASIMIIYNSERFGLSQLHQLRGRVGRGTHKSFCYLITSD HHHHHEEEEEEEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEEECC KNGLENKRLKVLEKSNDGFYIAEKDLEIRGPGQLLGYKQSGLPDFVLDNLPNNKVLIEKA CCCCCCCCEEEEEECCCCEEEEECCEEEECCCCEECCCCCCCCHHHHCCCCCCCEEHHHH REEAQNVIKDDPDLRKNFMLKDLLIDNSDNKFVHDFLN HHHHHHHHCCCHHHHHHHHHHHHEEECCCCCHHHHHCC >Mature Secondary Structure TNNKQYINLIKNWIRPLQKSLTLESENKFTNLHGRKQFFNDYLYESLSNLENLKLTDEY CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEECHHH IKLFSEFSIKYSQYNNLDSNQRKRLVIDTRKCLLKLSTSIDLIYSSKNTTSNYSRFADSN HHHHHHHCEEEHHCCCCCCCCCCEEEEEHHHHHHHHCCCEEEEEECCCCCCHHHHHCCCC LSLYSDISLIKSIGKVTKKKLNELGIFNIKDLINYFPRTYLDYTNRVKIVNLKPDNLYTC CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHCCCCCEEEEEECCCCHHHH IATIKKFSIYKSQNNSNLSIMNIVIFDETSSIKVTKFFLGKRYRSYSFYTSQKSLYIPGT HHHHHHHHEEECCCCCCEEEEEEEEEECCCCEEEEEEHHCCHHCCEEEEECCCEEEECCC KIAISGKVKLSEYGKNFIDPQIEILNNNDESFNFSGKIMPLYSLSESFSNISFIKLIKKV EEEEECEEEHHHHCCCCCCCEEEEECCCCCCEECCCEEEEEEHHHHHHCCHHHHHHHHHH IIYSKDYPDLLTQKQISSLSLLPKSDSLINIHLPPNQDALIESKKRLVFDELFLLQMKFL HHCCCCCHHHHHHHHHHHEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH LRKRKNNKKSTNRTFAQKRFLLQDFLNKIPFQLTKSQEKVLDEIKLDISDLTPMSRLLQG HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHCCHHHCCHHHHHHCC DVGSGKTIIAIVSLLIILEKDQQGALMVPTEVLANQHYKNLLKYLNPLSVSVELLTGNTP CCCCCCHHHHHHHHHHHEECCCCCCEECCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC QKKRKEILINLKNGMVDILVGTHALFEDKVIFNSLGMVVIDEQHRFGVTQRNRLLNKGDN HHHHHHEEEEECCCEEEEEECCHHHHHCHHHHHCCCEEEEECCHHCCCHHHHHHHCCCCC TNLLSMTATPIPRTLALSLYGDLDISQITELPPGRVPIITKIITEDDLDKLFSLVENEID CCEEEEECCCCCCEEEEEEECCCCHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHCC NGKQAYVILPLIEDSEKMNLSSAKNIFQYLSEEIFLKNKVGLLHGKLNSDEKNIVINSFL CCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEHHHH KNEISILVSTTVIEVGIDVPNASIMIIYNSERFGLSQLHQLRGRVGRGTHKSFCYLITSD HHHHHEEEEEEEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEEECC KNGLENKRLKVLEKSNDGFYIAEKDLEIRGPGQLLGYKQSGLPDFVLDNLPNNKVLIEKA CCCCCCCCEEEEEECCCCEEEEECCEEEECCCCEECCCCCCCCHHHHCCCCCCCEEHHHH REEAQNVIKDDPDLRKNFMLKDLLIDNSDNKFVHDFLN HHHHHHHHCCCHHHHHHHHHHHHEEECCCCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]