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The map label for this gene is ctpA [H]

Identifier: 123965985

GI number: 123965985

Start: 679242

End: 680543

Strand: Direct

Name: ctpA [H]

Synonym: P9515_07501

Alternate gene names: 123965985

Gene position: 679242-680543 (Clockwise)

Preceding gene: 123965984

Following gene: 123965987

Centisome position: 39.86

GC content: 31.03

Gene sequence:

>1302_bases
GTGTTTTTATTAGCGACTACTTTTTCTGGAATATTAGTAAGTGATTATGCAAAGGCCACTATTTTAATAAATAACTACAA
AGAGGTCATTGATCACGTTTGGCAAATTGTCTATAGAGATTTTCTTGATTCGAGTGGAAAATTCGAGAGATCAAATTGGA
TAAATATAAGAAAGAATTTTTTAGATAAAAAATATTCAGATAGTAACGAGGCTTACGATGCTATTAGAAGTATGCTTTTA
AAATTAGATGATCCTTATACTCGATTTTTAGATCCTAAAGAATTTAATCAAATGAGAATAGACACTTCAGGAGAATTGAC
TGGAGTTGGAATACAAATTGTTAAGGATAAAGAGTCTGATGATTTAATAATTATTTCTCCCATAGAGGGTACTCCTGCTT
ATGAGGCTGGAATTAAAGCTAGAGATAAAATCTTATCGATTGACAATATCTCGACTAAAGGAATGAATATTGAGGATGCT
GTTAAATTAATACGAGGTCAAAGAGGTACAAAAGTTAAACTTGAAATTTTTAGAAATGGTGATTCTTTTTACAAGTCTTT
ATTTCGAAAAAGAATAGAAATAAAGTCTGTTACAAGCAAAATAAATGATACTAAAGATGGATTTTTAATAGGTTACGTGA
GAATTAAGCAATTTAATGCTAATGCTTCAAAAGAGATGAAGGAAACAATAAAAGATTTAGAAATGAAAAAAGTTTCAGGA
TATGTTCTTGACTTGAGAAGTAATCCTGGCGGATTATTAGAATCAAGCATTGAGATTTCTCGTCAGTTTATAGATAAAGG
CATAATCGTTAGTACCTTATCTAAAGGTGGTTTAAGAGAAATTAAAAAAGGCAATGGTAATGCTTTAACACAAAAACCCT
TAATGGTTCTTGTCAACGAAGGTTCGGCGAGCGCAAGCGAAATAGTTTCAGGAGCAATTAGAGATAATAATAGAGGCAAA
TTAGTTGGTATGAAAACTTTTGGTAAAGGTCTTGTTCAGTCTATGAGAACTTTGGTGGACGGTTCAGGTTTAACAGTTAC
AGTCGCCAAGTATTTAACTCCCAATGGAACAGATATCAATAAGTTTGGTATTGTTCCAGATATAGAAGTCAAAATGAATT
CTAATCCAATTCTTCTGAAGGAAGTTGGCACTAGAAGAGATAGACAGTACAGAGTTGCTGAGAAGGAACTCATAAAATTG
ATTAAAAAATCTGATTTAGTAAGAAATTTTGAACCAAATTCTTCAAATTTATCAGAAGTTTTTGGAGAGAAATACCATAA
TCTGGTTTATAAATTTTATTAG

Upstream 100 bases:

>100_bases
TTAAATAAATTTTTAATTTATAATTCGATAAATAGAAATTTTAATTTTGAATACTACTTCCAAGCCTTTAAAGATAAAAA
AATTATTTAAAAAGCAGATT

Downstream 100 bases:

>100_bases
CTGCTCATATCTAGCATCCTCTTTATGGGCTTATAAGCTTTTTTAATTATTTCAGGTTCCAATTCAATTGATGGAGAATT
ATTTTTCAAACAATCTAAAA

Product: carboxyl-terminal processing protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 433; Mature: 433

Protein sequence:

>433_residues
MFLLATTFSGILVSDYAKATILINNYKEVIDHVWQIVYRDFLDSSGKFERSNWINIRKNFLDKKYSDSNEAYDAIRSMLL
KLDDPYTRFLDPKEFNQMRIDTSGELTGVGIQIVKDKESDDLIIISPIEGTPAYEAGIKARDKILSIDNISTKGMNIEDA
VKLIRGQRGTKVKLEIFRNGDSFYKSLFRKRIEIKSVTSKINDTKDGFLIGYVRIKQFNANASKEMKETIKDLEMKKVSG
YVLDLRSNPGGLLESSIEISRQFIDKGIIVSTLSKGGLREIKKGNGNALTQKPLMVLVNEGSASASEIVSGAIRDNNRGK
LVGMKTFGKGLVQSMRTLVDGSGLTVTVAKYLTPNGTDINKFGIVPDIEVKMNSNPILLKEVGTRRDRQYRVAEKELIKL
IKKSDLVRNFEPNSSNLSEVFGEKYHNLVYKFY

Sequences:

>Translated_433_residues
MFLLATTFSGILVSDYAKATILINNYKEVIDHVWQIVYRDFLDSSGKFERSNWINIRKNFLDKKYSDSNEAYDAIRSMLL
KLDDPYTRFLDPKEFNQMRIDTSGELTGVGIQIVKDKESDDLIIISPIEGTPAYEAGIKARDKILSIDNISTKGMNIEDA
VKLIRGQRGTKVKLEIFRNGDSFYKSLFRKRIEIKSVTSKINDTKDGFLIGYVRIKQFNANASKEMKETIKDLEMKKVSG
YVLDLRSNPGGLLESSIEISRQFIDKGIIVSTLSKGGLREIKKGNGNALTQKPLMVLVNEGSASASEIVSGAIRDNNRGK
LVGMKTFGKGLVQSMRTLVDGSGLTVTVAKYLTPNGTDINKFGIVPDIEVKMNSNPILLKEVGTRRDRQYRVAEKELIKL
IKKSDLVRNFEPNSSNLSEVFGEKYHNLVYKFY
>Mature_433_residues
MFLLATTFSGILVSDYAKATILINNYKEVIDHVWQIVYRDFLDSSGKFERSNWINIRKNFLDKKYSDSNEAYDAIRSMLL
KLDDPYTRFLDPKEFNQMRIDTSGELTGVGIQIVKDKESDDLIIISPIEGTPAYEAGIKARDKILSIDNISTKGMNIEDA
VKLIRGQRGTKVKLEIFRNGDSFYKSLFRKRIEIKSVTSKINDTKDGFLIGYVRIKQFNANASKEMKETIKDLEMKKVSG
YVLDLRSNPGGLLESSIEISRQFIDKGIIVSTLSKGGLREIKKGNGNALTQKPLMVLVNEGSASASEIVSGAIRDNNRGK
LVGMKTFGKGLVQSMRTLVDGSGLTVTVAKYLTPNGTDINKFGIVPDIEVKMNSNPILLKEVGTRRDRQYRVAEKELIKL
IKKSDLVRNFEPNSSNLSEVFGEKYHNLVYKFY

Specific function: Cleavage of the 16 C-terminal residues from the D1 precursor of photosystem II. May be involved in protection of the bacterium from thermal and osmotic stresses [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1788134, Length=310, Percent_Identity=33.2258064516129, Blast_Score=134, Evalue=8e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 48781; Mature: 48781

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLLATTFSGILVSDYAKATILINNYKEVIDHVWQIVYRDFLDSSGKFERSNWINIRKNF
CEEEEEECCCHHEECCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
LDKKYSDSNEAYDAIRSMLLKLDDPYTRFLDPKEFNQMRIDTSGELTGVGIQIVKDKESD
HCCCCCCCHHHHHHHHHHHHHCCCCHHHCCCCHHHCEEEECCCCCEEEEEEEEEECCCCC
DLIIISPIEGTPAYEAGIKARDKILSIDNISTKGMNIEDAVKLIRGQRGTKVKLEIFRNG
CEEEEECCCCCCCHHHCCCHHHHEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEEEECC
DSFYKSLFRKRIEIKSVTSKINDTKDGFLIGYVRIKQFNANASKEMKETIKDLEMKKVSG
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHCC
YVLDLRSNPGGLLESSIEISRQFIDKGIIVSTLSKGGLREIKKGNGNALTQKPLMVLVNE
EEEEEECCCCCHHHHHHHHHHHHHHCCCEEEHHCCCCHHHHHCCCCCCEECCCEEEEEEC
GSASASEIVSGAIRDNNRGKLVGMKTFGKGLVQSMRTLVDGSGLTVTVAKYLTPNGTDIN
CCCCHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCH
KFGIVPDIEVKMNSNPILLKEVGTRRDRQYRVAEKELIKLIKKSDLVRNFEPNSSNLSEV
HCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
FGEKYHNLVYKFY
HHHHHHHHEEEEC
>Mature Secondary Structure
MFLLATTFSGILVSDYAKATILINNYKEVIDHVWQIVYRDFLDSSGKFERSNWINIRKNF
CEEEEEECCCHHEECCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
LDKKYSDSNEAYDAIRSMLLKLDDPYTRFLDPKEFNQMRIDTSGELTGVGIQIVKDKESD
HCCCCCCCHHHHHHHHHHHHHCCCCHHHCCCCHHHCEEEECCCCCEEEEEEEEEECCCCC
DLIIISPIEGTPAYEAGIKARDKILSIDNISTKGMNIEDAVKLIRGQRGTKVKLEIFRNG
CEEEEECCCCCCCHHHCCCHHHHEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEEEECC
DSFYKSLFRKRIEIKSVTSKINDTKDGFLIGYVRIKQFNANASKEMKETIKDLEMKKVSG
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHCC
YVLDLRSNPGGLLESSIEISRQFIDKGIIVSTLSKGGLREIKKGNGNALTQKPLMVLVNE
EEEEEECCCCCHHHHHHHHHHHHHHCCCEEEHHCCCCHHHHHCCCCCCEECCCEEEEEEC
GSASASEIVSGAIRDNNRGKLVGMKTFGKGLVQSMRTLVDGSGLTVTVAKYLTPNGTDIN
CCCCHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCH
KFGIVPDIEVKMNSNPILLKEVGTRRDRQYRVAEKELIKLIKKSDLVRNFEPNSSNLSEV
HCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
FGEKYHNLVYKFY
HHHHHHHHEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8034700; 8058761; 8590279; 8905231 [H]