Click here to switch to the map view.

The map label for this gene is rbcL [H]

Identifier: 123965849

GI number: 123965849

Start: 549602

End: 551017

Strand: Direct

Name: rbcL [H]

Synonym: P9515_06141

Alternate gene names: 123965849

Gene position: 549602-551017 (Clockwise)

Preceding gene: 123965848

Following gene: 123965850

Centisome position: 32.25

GC content: 41.1

Gene sequence:

>1416_bases
ATGAGTAAGAAGTATGACGCTGGGGTAAAGGAGTACAGAGATACATACTGGACTCCTGAATATGTCCCCCTTGACACTGA
CTTGTTAGCCTGTTTCAAATGCACAGGTCAAGAAGGTGTTCCGAGAGAAGAAGTTGCTGCAGCGGTAGCGGCTGAATCTT
CTACAGGTACTTGGTCAACTGTTTGGTCCGAGTTACTTACAGACCTTGAATTTTACAAGGGTCGTTGTTATCGGATTGAA
GATGTTCCCGGAGATCCAGAAGCATTCTATGCATTTATTGCATATCCTCTAGATCTTTTCGAAGAAGGTTCAATCACAAA
CGTATTAACATCATTAGTCGGAAACGTTTTTGGATTTAAAGCTCTAAGACATCTACGTCTTGAAGATATTAGATTCCCAA
TCGCTTTTATTAAGACTTGTGGTGGACCACCTAATGGCATAGTTGTTGAAAGAGATCGACTTAATAAGTATGGAAGACCT
CTTCTTGGCTGTACCATTAAACCTAAATTAGGTCTGTCTGGTAAAAACTATGGTCGAGTTGTATATGAGTGTCTTAGAGG
CGGTCTTGATTTAACAAAGGATGATGAGAATATTAATTCTCAACCATTCCAGCGTTGGAGAGAAAGATTTGAGTTTGTTG
CAGAAGCAGTTAAACTTGCTCAGCAAGAAACTGGAGAAGTTAAAGGTCACTACCTAAACTGTACTGCAAACACTCCTGAA
GAGCTCTATGAACGTGCTGAATTTGCAAAAGAGCTAGATATGCCAATCATCATGCATGATTATATAACTGGTGGTTTTAC
TGCAAATACTGGCTTGGCAAACTGGTGTCGTAAAAATGGCATGCTTCTGCATATTCACAGAGCTATGCATGCTGTTATTG
ATAGACATCCGAAGCATGGTATTCATTTCAGAGTTCTAGCAAAATGTTTGAGACTCTCCGGTGGAGATCAATTACATACT
GGAACTGTTGTTGGAAAACTAGAGGGTGATCGTCAAACAACTCTTGGCTACATTGACAACTTAAGAGAGTCATTTGTTCC
TGAAGATAGATCAAGAGGTAACTTCTTTGATCAAGATTGGGGTTCAATGCCAGGAGTTTTTGCTGTCGCATCAGGTGGTA
TTCACGTATGGCATATGCCTGCACTTTTAGCGATTTTTGGAGATGATTCTTGTCTTCAGTTCGGTGGAGGAACACATGGT
CACCCATGGGGTTCAGCTGCTGGAGCTGCAGCCAACAGAGTTGCTTTAGAAGCTTGTGTAAAAGCACGTAATGCTGGTCG
CGAAATCGAAAAAGAGAGTAGAGACATTCTTATGGAAGCTGCTAAGCACAGTCCTGAATTGGCTATTGCTCTTGAAACTT
GGAAGGAAATTAAGTTTGAATTTGATACCGTCGACAAGCTTGACGTTCAAGGTTAA

Upstream 100 bases:

>100_bases
TGGTAATGGCGATTTCCTTGGTCAAAAGGACTAAATTAAATAAAGCAAAATATAATTTTGCACAAAAATATTTTCCCTTT
ATAGACCTTAATTTATCCTT

Downstream 100 bases:

>100_bases
ACCACATTTCAAAATTGAGGAGATTTTTCCTCTCCTCAAACTTCTATAAATCTCGTTCTTTTACGAGTAATTTCATTCAC
ATTTAAATTTATTATGCCTT

Product: ribulose bisophosphate carboxylase

Products: NA

Alternate protein names: RuBisCO large subunit [H]

Number of amino acids: Translated: 471; Mature: 470

Protein sequence:

>471_residues
MSKKYDAGVKEYRDTYWTPEYVPLDTDLLACFKCTGQEGVPREEVAAAVAAESSTGTWSTVWSELLTDLEFYKGRCYRIE
DVPGDPEAFYAFIAYPLDLFEEGSITNVLTSLVGNVFGFKALRHLRLEDIRFPIAFIKTCGGPPNGIVVERDRLNKYGRP
LLGCTIKPKLGLSGKNYGRVVYECLRGGLDLTKDDENINSQPFQRWRERFEFVAEAVKLAQQETGEVKGHYLNCTANTPE
ELYERAEFAKELDMPIIMHDYITGGFTANTGLANWCRKNGMLLHIHRAMHAVIDRHPKHGIHFRVLAKCLRLSGGDQLHT
GTVVGKLEGDRQTTLGYIDNLRESFVPEDRSRGNFFDQDWGSMPGVFAVASGGIHVWHMPALLAIFGDDSCLQFGGGTHG
HPWGSAAGAAANRVALEACVKARNAGREIEKESRDILMEAAKHSPELAIALETWKEIKFEFDTVDKLDVQG

Sequences:

>Translated_471_residues
MSKKYDAGVKEYRDTYWTPEYVPLDTDLLACFKCTGQEGVPREEVAAAVAAESSTGTWSTVWSELLTDLEFYKGRCYRIE
DVPGDPEAFYAFIAYPLDLFEEGSITNVLTSLVGNVFGFKALRHLRLEDIRFPIAFIKTCGGPPNGIVVERDRLNKYGRP
LLGCTIKPKLGLSGKNYGRVVYECLRGGLDLTKDDENINSQPFQRWRERFEFVAEAVKLAQQETGEVKGHYLNCTANTPE
ELYERAEFAKELDMPIIMHDYITGGFTANTGLANWCRKNGMLLHIHRAMHAVIDRHPKHGIHFRVLAKCLRLSGGDQLHT
GTVVGKLEGDRQTTLGYIDNLRESFVPEDRSRGNFFDQDWGSMPGVFAVASGGIHVWHMPALLAIFGDDSCLQFGGGTHG
HPWGSAAGAAANRVALEACVKARNAGREIEKESRDILMEAAKHSPELAIALETWKEIKFEFDTVDKLDVQG
>Mature_470_residues
SKKYDAGVKEYRDTYWTPEYVPLDTDLLACFKCTGQEGVPREEVAAAVAAESSTGTWSTVWSELLTDLEFYKGRCYRIED
VPGDPEAFYAFIAYPLDLFEEGSITNVLTSLVGNVFGFKALRHLRLEDIRFPIAFIKTCGGPPNGIVVERDRLNKYGRPL
LGCTIKPKLGLSGKNYGRVVYECLRGGLDLTKDDENINSQPFQRWRERFEFVAEAVKLAQQETGEVKGHYLNCTANTPEE
LYERAEFAKELDMPIIMHDYITGGFTANTGLANWCRKNGMLLHIHRAMHAVIDRHPKHGIHFRVLAKCLRLSGGDQLHTG
TVVGKLEGDRQTTLGYIDNLRESFVPEDRSRGNFFDQDWGSMPGVFAVASGGIHVWHMPALLAIFGDDSCLQFGGGTHGH
PWGSAAGAAANRVALEACVKARNAGREIEKESRDILMEAAKHSPELAIALETWKEIKFEFDTVDKLDVQG

Specific function: RuBisCO catalyzes two reactions:the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultan

COG id: COG1850

COG function: function code G; Ribulose 1,5-bisphosphate carboxylase, large subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RuBisCO large chain family. Type I subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020888
- InterPro:   IPR000685
- InterPro:   IPR017443
- InterPro:   IPR017444 [H]

Pfam domain/function: PF00016 RuBisCO_large; PF02788 RuBisCO_large_N [H]

EC number: =4.1.1.39 [H]

Molecular weight: Translated: 52574; Mature: 52443

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKYDAGVKEYRDTYWTPEYVPLDTDLLACFKCTGQEGVPREEVAAAVAAESSTGTWST
CCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHH
VWSELLTDLEFYKGRCYRIEDVPGDPEAFYAFIAYPLDLFEEGSITNVLTSLVGNVFGFK
HHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
ALRHLRLEDIRFPIAFIKTCGGPPNGIVVERDRLNKYGRPLLGCTIKPKLGLSGKNYGRV
HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHCCCCEEEEEECCCCCCCCCCHHHH
VYECLRGGLDLTKDDENINSQPFQRWRERFEFVAEAVKLAQQETGEVKGHYLNCTANTPE
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHH
ELYERAEFAKELDMPIIMHDYITGGFTANTGLANWCRKNGMLLHIHRAMHAVIDRHPKHG
HHHHHHHHHHHCCCCEEEHHHCCCCCCCCCCHHHHHHHCCEEEEHHHHHHHHHHCCCCCC
IHFRVLAKCLRLSGGDQLHTGTVVGKLEGDRQTTLGYIDNLRESFVPEDRSRGNFFDQDW
CHHHHHHHHHHCCCCCEEECCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
GSMPGVFAVASGGIHVWHMPALLAIFGDDSCLQFGGGTHGHPWGSAAGAAANRVALEACV
CCCCCEEEEECCCEEEEEHHHHHHHCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHH
KARNAGREIEKESRDILMEAAKHSPELAIALETWKEIKFEFDTVDKLDVQG
HHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHEEECCCCCCCCCCC
>Mature Secondary Structure 
SKKYDAGVKEYRDTYWTPEYVPLDTDLLACFKCTGQEGVPREEVAAAVAAESSTGTWST
CCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHH
VWSELLTDLEFYKGRCYRIEDVPGDPEAFYAFIAYPLDLFEEGSITNVLTSLVGNVFGFK
HHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
ALRHLRLEDIRFPIAFIKTCGGPPNGIVVERDRLNKYGRPLLGCTIKPKLGLSGKNYGRV
HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHCCCCEEEEEECCCCCCCCCCHHHH
VYECLRGGLDLTKDDENINSQPFQRWRERFEFVAEAVKLAQQETGEVKGHYLNCTANTPE
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHH
ELYERAEFAKELDMPIIMHDYITGGFTANTGLANWCRKNGMLLHIHRAMHAVIDRHPKHG
HHHHHHHHHHHCCCCEEEHHHCCCCCCCCCCHHHHHHHCCEEEEHHHHHHHHHHCCCCCC
IHFRVLAKCLRLSGGDQLHTGTVVGKLEGDRQTTLGYIDNLRESFVPEDRSRGNFFDQDW
CHHHHHHHHHHCCCCCEEECCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
GSMPGVFAVASGGIHVWHMPALLAIFGDDSCLQFGGGTHGHPWGSAAGAAANRVALEACV
CCCCCEEEEECCCEEEEEHHHHHHHCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHH
KARNAGREIEKESRDILMEAAKHSPELAIALETWKEIKFEFDTVDKLDVQG
HHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA