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The map label for this gene is petA

Identifier: 123965760

GI number: 123965760

Start: 470241

End: 471194

Strand: Reverse

Name: petA

Synonym: P9515_05251

Alternate gene names: 123965760

Gene position: 471194-470241 (Counterclockwise)

Preceding gene: 123965761

Following gene: 123965759

Centisome position: 27.65

GC content: 37.84

Gene sequence:

>954_bases
ATGATTAATTTTAAAAAACAAATAATGAAAAAAACAACTTTCTTTCTCTGCGCAATGCTCTTGGTTTCCAGTATTTTAAT
TGCCCCAAGATCTTCTTTGGCTTATCCTTTTTGGGCGCAGCAAAATTACGAATCTCCTAGAGAAGCTACAGGAAAAATAG
TCTGCGCAAATTGCCATTTAGCGCAAATGCCAACTATTGCAGAAGTACCGCAAGCTGTTGGGGCTGACAGTGTTTTCAAA
GCTGTAGTCAAAATACCTTATAAAGATGACATAAAGGAAATAGGCGCTGATGGCTCAGAGGTACCTTTACAAGTTGGGGC
TGTGGTTATGCTGCCTGACGGCTTTAAATTAGCTCCTCAGGAGAGATGGACTGATGAAATAAAAGAAGAAACGGAAGGGG
TATACTTTACTAACTACAGCGAAGAAAAAGAGAATATAATTATTGTTGGACCATTACCCGGCGATACTAATAAAGAAATT
ATTTTTCCAGTTCTTTCACCTAATCCAGCTACCAATAAAGAATATCACTATGGGAAGTATTCCTTGCATATTGGAGGGAA
TAGAGGCAGAGGACAAGTTTATCCAACTGGTGACAAGAGTAACAATGTAATATTCACTTCTTCTTCTGCAGGAACTATCA
ATTCAATAGAAACTATAGAAGACGGTAGTTATCAGATCAATATTGAGAATGAGAACGGGGAAATAACTACTGAGGCTGTT
CCAGTTGGTCCTAAACTAATTGTGAAAGAACAAGACCAAATAACTGTAGGAGCCCCTCTCACTAGTGACCCTAATGTCGG
AGGTTTTGGACAATTAGATGCTGAAGTAGTATTACAAAGCCCTTATAGAATTATAGGCTTAATTGCATTTTTTATCGGTG
TAGGCCTAACTCAAATATTACTAGTGCTTAAGAAGAAACAAGTTGAAAAAGTACAAGCTGCTGAGGGCATTTAA

Upstream 100 bases:

>100_bases
GCCTTGGCGCATGTTGATGTAGATGATGATGCTGTGCTTGTAAAACAGTGGTCAGAAACAGATTTTAGAACTAATGAAAA
TCCATGGTGGGCTTAAGAGA

Downstream 100 bases:

>100_bases
TTAGGCTTTAAATGCTTACACATCAAGCTTTTATTCAATCACCTGGAGATACATTTTTAAATTTAGGTTTTCTAACTATT
AGATGGTATGGACTGCTAAT

Product: apocytochrome f

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MINFKKQIMKKTTFFLCAMLLVSSILIAPRSSLAYPFWAQQNYESPREATGKIVCANCHLAQMPTIAEVPQAVGADSVFK
AVVKIPYKDDIKEIGADGSEVPLQVGAVVMLPDGFKLAPQERWTDEIKEETEGVYFTNYSEEKENIIIVGPLPGDTNKEI
IFPVLSPNPATNKEYHYGKYSLHIGGNRGRGQVYPTGDKSNNVIFTSSSAGTINSIETIEDGSYQINIENENGEITTEAV
PVGPKLIVKEQDQITVGAPLTSDPNVGGFGQLDAEVVLQSPYRIIGLIAFFIGVGLTQILLVLKKKQVEKVQAAEGI

Sequences:

>Translated_317_residues
MINFKKQIMKKTTFFLCAMLLVSSILIAPRSSLAYPFWAQQNYESPREATGKIVCANCHLAQMPTIAEVPQAVGADSVFK
AVVKIPYKDDIKEIGADGSEVPLQVGAVVMLPDGFKLAPQERWTDEIKEETEGVYFTNYSEEKENIIIVGPLPGDTNKEI
IFPVLSPNPATNKEYHYGKYSLHIGGNRGRGQVYPTGDKSNNVIFTSSSAGTINSIETIEDGSYQINIENENGEITTEAV
PVGPKLIVKEQDQITVGAPLTSDPNVGGFGQLDAEVVLQSPYRIIGLIAFFIGVGLTQILLVLKKKQVEKVQAAEGI
>Mature_317_residues
MINFKKQIMKKTTFFLCAMLLVSSILIAPRSSLAYPFWAQQNYESPREATGKIVCANCHLAQMPTIAEVPQAVGADSVFK
AVVKIPYKDDIKEIGADGSEVPLQVGAVVMLPDGFKLAPQERWTDEIKEETEGVYFTNYSEEKENIIIVGPLPGDTNKEI
IFPVLSPNPATNKEYHYGKYSLHIGGNRGRGQVYPTGDKSNNVIFTSSSAGTINSIETIEDGSYQINIENENGEITTEAV
PVGPKLIVKEQDQITVGAPLTSDPNVGGFGQLDAEVVLQSPYRIIGLIAFFIGVGLTQILLVLKKKQVEKVQAAEGI

Specific function: Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Single-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome f family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CYF_PROM5 (A2BVC3)

Other databases:

- EMBL:   CP000552
- RefSeq:   YP_001010841.1
- ProteinModelPortal:   A2BVC3
- SMR:   A2BVC3
- STRING:   A2BVC3
- GeneID:   4720038
- GenomeReviews:   CP000552_GR
- KEGG:   pmc:P9515_05251
- eggNOG:   NOG04227
- HOGENOM:   HBG750208
- OMA:   AYPFWAQ
- ProtClustDB:   PRK02693
- BioCyc:   PMAR167542:P9515ORF_0559-MONOMER
- GO:   GO:0015979
- GO:   GO:0006810
- HAMAP:   MF_00610
- InterPro:   IPR002325
- InterPro:   IPR011054
- Gene3D:   G3DSA:2.60.40.830
- PRINTS:   PR00610

Pfam domain/function: PF01333 Apocytochr_F_C; SSF49441 Apocyt_F; SSF51246 Rudmnt_hyb_motif

EC number: NA

Molecular weight: Translated: 34565; Mature: 34565

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: PS51010 CYTF

Important sites: BINDING 55-55 BINDING 58-58

Signals:

None

Transmembrane regions:

HASH(0x192c9930)-;

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINFKKQIMKKTTFFLCAMLLVSSILIAPRSSLAYPFWAQQNYESPREATGKIVCANCHL
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCHHCCCCEEEECCCH
AQMPTIAEVPQAVGADSVFKAVVKIPYKDDIKEIGADGSEVPLQVGAVVMLPDGFKLAPQ
HHCCCHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCEEECEEEECCCCCEECCH
ERWTDEIKEETEGVYFTNYSEEKENIIIVGPLPGDTNKEIIFPVLSPNPATNKEYHYGKY
HHHHHHHHHHHCCEEEECCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCEECCEE
SLHIGGNRGRGQVYPTGDKSNNVIFTSSSAGTINSIETIEDGSYQINIENENGEITTEAV
EEEECCCCCCCCEEECCCCCCCEEEECCCCCCCCCEEEECCCCEEEEEECCCCEEEEEEE
PVGPKLIVKEQDQITVGAPLTSDPNVGGFGQLDAEVVLQSPYRIIGLIAFFIGVGLTQIL
CCCCEEEEECCCCEEECCCCCCCCCCCCCCCCCHHHEECCCHHHHHHHHHHHHHHHHHHH
LVLKKKQVEKVQAAEGI
HHHHHHHHHHHHHHCCH
>Mature Secondary Structure
MINFKKQIMKKTTFFLCAMLLVSSILIAPRSSLAYPFWAQQNYESPREATGKIVCANCHL
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCHHCCCCEEEECCCH
AQMPTIAEVPQAVGADSVFKAVVKIPYKDDIKEIGADGSEVPLQVGAVVMLPDGFKLAPQ
HHCCCHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCEEECEEEECCCCCEECCH
ERWTDEIKEETEGVYFTNYSEEKENIIIVGPLPGDTNKEIIFPVLSPNPATNKEYHYGKY
HHHHHHHHHHHCCEEEECCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCEECCEE
SLHIGGNRGRGQVYPTGDKSNNVIFTSSSAGTINSIETIEDGSYQINIENENGEITTEAV
EEEECCCCCCCCEEECCCCCCCEEEECCCCCCCCCEEEECCCCEEEEEECCCCEEEEEEE
PVGPKLIVKEQDQITVGAPLTSDPNVGGFGQLDAEVVLQSPYRIIGLIAFFIGVGLTQIL
CCCCEEEEECCCCEEECCCCCCCCCCCCCCCCCHHHEECCCHHHHHHHHHHHHHHHHHHH
LVLKKKQVEKVQAAEGI
HHHHHHHHHHHHHHCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA