| Definition | Prochlorococcus marinus str. MIT 9515, complete genome. |
|---|---|
| Accession | NC_008817 |
| Length | 1,704,176 |
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The map label for this gene is 123965557
Identifier: 123965557
GI number: 123965557
Start: 298687
End: 299532
Strand: Reverse
Name: 123965557
Synonym: P9515_03221
Alternate gene names: NA
Gene position: 299532-298687 (Counterclockwise)
Preceding gene: 123965558
Following gene: 123965555
Centisome position: 17.58
GC content: 31.21
Gene sequence:
>846_bases ATGCGTAGAAGCTTACGAGACTCAATTGTAGGATTTTCCTTATTAGGAGGAATATTAATATTTACTTTTTTTTCCTTCTG GTTAAGAGGTGTAAAACTTTCTTCAAAGAATTGGTATCTTTTCGCAGAATTTAACAACGCAAGCGGTTTATCAAAAAAAT CTCCAGTAACTTACAGAGGAATTTTAGTAGGTTCAATTGAAGATATTCTTTTTACTAATGAATCCATCAAAGCAAAAATC GTTCTCAATAATCCTGAAATTATTCTTCCAAAGCCAGCATTTGCAAAAGTTGTTACCAATTCTTTTCTAGGAGGTGATGT TCAAGTATCATTAGAAACCAGTCAAAAAACAATCCCAAAGGATATTGCAAAAGCAATATCAGAAGAATGTGATAGTGAAT TAATTGTGTGCCAGGGAGACACTATTACTGGAAAGCAGCTTTCTAGCCTTTCAAACATAACTAACAGGATAAATCAAATC CTAAAAGAATCAAATCAAGAAAATCTAATTGAAAATGTAGTTAATTCAATAGACCAATTTGATAAAACACAAGAAAATCT TGATGAACTAATTTATTTGTCTAAGCAAGAAATTTTAAGAGTTAAACCTCTTATCAAAGAAGTTACAGTAGCGGCAGGTC ATTTAAACAGTATTTTGTCTGCCATCGATAACGAAGACACTCTGAAAGATATTAAGTTGACAATAAATGCCGCGGAATCA ATATCAGGCAAATTAGACAATATGAGTGATGATTTTGAAGGCTTAATGAAAGACAAAGAATTAACAAAATCTTTAAGAGA TTTAACAATTGGGCTTTCTAAATTCCTTAACGAGATTTATCCATAA
Upstream 100 bases:
>100_bases GTTCTATTGATGAATTTAAAGAAAGTAATGATCCTTACGTTTTTCAGTTTAGAAATGGAAACCTTAATGGACCAATGCAA CCAAAAGAGATTTAAACATT
Downstream 100 bases:
>100_bases AAATTTAAAATTCATTGATTGCGTTTAAAGCCATCGCTGCAATTGTCTTATCTGTAGCTTTTGGTAATTGAACATATTTT CCTTTTGCAGCTTCCGCTAG
Product: putative ABC transporter
Products: NA
Alternate protein names: Mce Related Protein; Mammalian Cell Entry Related Domain Protein; ABC-Type Transport System Periplasmic Component
Number of amino acids: Translated: 281; Mature: 281
Protein sequence:
>281_residues MRRSLRDSIVGFSLLGGILIFTFFSFWLRGVKLSSKNWYLFAEFNNASGLSKKSPVTYRGILVGSIEDILFTNESIKAKI VLNNPEIILPKPAFAKVVTNSFLGGDVQVSLETSQKTIPKDIAKAISEECDSELIVCQGDTITGKQLSSLSNITNRINQI LKESNQENLIENVVNSIDQFDKTQENLDELIYLSKQEILRVKPLIKEVTVAAGHLNSILSAIDNEDTLKDIKLTINAAES ISGKLDNMSDDFEGLMKDKELTKSLRDLTIGLSKFLNEIYP
Sequences:
>Translated_281_residues MRRSLRDSIVGFSLLGGILIFTFFSFWLRGVKLSSKNWYLFAEFNNASGLSKKSPVTYRGILVGSIEDILFTNESIKAKI VLNNPEIILPKPAFAKVVTNSFLGGDVQVSLETSQKTIPKDIAKAISEECDSELIVCQGDTITGKQLSSLSNITNRINQI LKESNQENLIENVVNSIDQFDKTQENLDELIYLSKQEILRVKPLIKEVTVAAGHLNSILSAIDNEDTLKDIKLTINAAES ISGKLDNMSDDFEGLMKDKELTKSLRDLTIGLSKFLNEIYP >Mature_281_residues MRRSLRDSIVGFSLLGGILIFTFFSFWLRGVKLSSKNWYLFAEFNNASGLSKKSPVTYRGILVGSIEDILFTNESIKAKI VLNNPEIILPKPAFAKVVTNSFLGGDVQVSLETSQKTIPKDIAKAISEECDSELIVCQGDTITGKQLSSLSNITNRINQI LKESNQENLIENVVNSIDQFDKTQENLDELIYLSKQEILRVKPLIKEVTVAAGHLNSILSAIDNEDTLKDIKLTINAAES ISGKLDNMSDDFEGLMKDKELTKSLRDLTIGLSKFLNEIYP
Specific function: Unknown
COG id: COG1463
COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31266; Mature: 31266
Theoretical pI: Translated: 4.93; Mature: 4.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRSLRDSIVGFSLLGGILIFTFFSFWLRGVKLSSKNWYLFAEFNNASGLSKKSPVTYRG CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCEEEEEEECCCCCCCCCCCCEEEE ILVGSIEDILFTNESIKAKIVLNNPEIILPKPAFAKVVTNSFLGGDVQVSLETSQKTIPK EEEECHHHHHCCCCCEEEEEEECCCCEEECCHHHHHHHHHHCCCCCEEEEEECCCCCCHH DIAKAISEECDSELIVCQGDTITGKQLSSLSNITNRINQILKESNQENLIENVVNSIDQF HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH DKTQENLDELIYLSKQEILRVKPLIKEVTVAAGHLNSILSAIDNEDTLKDIKLTINAAES HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHEEEEHHHH ISGKLDNMSDDFEGLMKDKELTKSLRDLTIGLSKFLNEIYP HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MRRSLRDSIVGFSLLGGILIFTFFSFWLRGVKLSSKNWYLFAEFNNASGLSKKSPVTYRG CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCEEEEEEECCCCCCCCCCCCEEEE ILVGSIEDILFTNESIKAKIVLNNPEIILPKPAFAKVVTNSFLGGDVQVSLETSQKTIPK EEEECHHHHHCCCCCEEEEEEECCCCEEECCHHHHHHHHHHCCCCCEEEEEECCCCCCHH DIAKAISEECDSELIVCQGDTITGKQLSSLSNITNRINQILKESNQENLIENVVNSIDQF HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH DKTQENLDELIYLSKQEILRVKPLIKEVTVAAGHLNSILSAIDNEDTLKDIKLTINAAES HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHEEEEHHHH ISGKLDNMSDDFEGLMKDKELTKSLRDLTIGLSKFLNEIYP HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA