Click here to switch to the map view.

The map label for this gene is rbgA [H]

Identifier: 123965458

GI number: 123965458

Start: 205191

End: 206057

Strand: Reverse

Name: rbgA [H]

Synonym: P9515_02231

Alternate gene names: 123965458

Gene position: 206057-205191 (Counterclockwise)

Preceding gene: 123965460

Following gene: 123965457

Centisome position: 12.09

GC content: 34.03

Gene sequence:

>867_bases
GTGGAAATACCTACAATACAATGGTACCCAGGCCATATTGCCAAAGCCGAAAAAAAGCTATCTGCAGTTATAAGCAGAGT
AGATTTAATTATAGAAGTTAGAGATGCAAGAATTCCATTGTCAACAGGTCATCCTCATCTAAATCAATGGATCACAAACA
AAAAACATATCCTTGTAATTAATCGCGCTGATATGATAGCTCCTGAAACTATTATTAATTGGAACACATGGTTTAAAAAA
TATGATATTTATCCTCTTTGGTGTGATGCAAAAAATGGGAAGGGAATAAAAGAAATTTGCAAATCTGCGAAGGAATCTCG
CTTGTCAATTGACAAAAGAAGGTTATCCAGAGGAATGAAGGTTAGACCGATCAGAGCTCTTACTCTCGGTTTTCCTAATG
TAGGAAAATCTGCATTAATAAATAGAATCGCTAAAAAGAAAGTTGTAGAAAGCGCTAGAAAAGCTGGCGTGACTCGTAAT
CTCAGATGGATCAGATTAGACGGTGGAATTGATTTACTTGATGCTCCTGGTGTTATACCGCCAAATTTAGAGAATCAAAA
ATCTGCTCTAAATCTTGCACTTTGCGATGATATTGGAGAAGCTGCTTATGAAATAGAAAGTGTTGCTATTGAATTTTTAA
AAATTATCTTTAAATTAAAAGAAGATAAAAATGCTAATATTTCACTTAAAAAGATATCTAATAGATATGGGGTTGATATT
TTAAAAAGCTTTGATAGTCCACATGAATGGATTGATCTTGTAGCATTAAAACATACCTCAGGCGACAGAAGAAGAATGGC
TTACAAATTATTAGAGGATTATCGTAATCAAATGCTTGGAAAAATTGCTTTGGAAGTGCCGAGATGA

Upstream 100 bases:

>100_bases
TAAAAAAAATTTTAATTTTTACATTACTATTGAATATAATTACTTTTAATACTGATAGTAATCAAAAGGTATATACGTAC
AATCTATTGGATTTGATCAA

Downstream 100 bases:

>100_bases
AATCAAGCAATGCCAATTCATTTGGAGTAGGAGAAGGTGAACTAACAGAAATTATTTATGAGCTACCACTTCCTATGCGA
CTCGATAGGTGGCTAGTAAG

Product: ribosomal biogenesis GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MEIPTIQWYPGHIAKAEKKLSAVISRVDLIIEVRDARIPLSTGHPHLNQWITNKKHILVINRADMIAPETIINWNTWFKK
YDIYPLWCDAKNGKGIKEICKSAKESRLSIDKRRLSRGMKVRPIRALTLGFPNVGKSALINRIAKKKVVESARKAGVTRN
LRWIRLDGGIDLLDAPGVIPPNLENQKSALNLALCDDIGEAAYEIESVAIEFLKIIFKLKEDKNANISLKKISNRYGVDI
LKSFDSPHEWIDLVALKHTSGDRRRMAYKLLEDYRNQMLGKIALEVPR

Sequences:

>Translated_288_residues
MEIPTIQWYPGHIAKAEKKLSAVISRVDLIIEVRDARIPLSTGHPHLNQWITNKKHILVINRADMIAPETIINWNTWFKK
YDIYPLWCDAKNGKGIKEICKSAKESRLSIDKRRLSRGMKVRPIRALTLGFPNVGKSALINRIAKKKVVESARKAGVTRN
LRWIRLDGGIDLLDAPGVIPPNLENQKSALNLALCDDIGEAAYEIESVAIEFLKIIFKLKEDKNANISLKKISNRYGVDI
LKSFDSPHEWIDLVALKHTSGDRRRMAYKLLEDYRNQMLGKIALEVPR
>Mature_288_residues
MEIPTIQWYPGHIAKAEKKLSAVISRVDLIIEVRDARIPLSTGHPHLNQWITNKKHILVINRADMIAPETIINWNTWFKK
YDIYPLWCDAKNGKGIKEICKSAKESRLSIDKRRLSRGMKVRPIRALTLGFPNVGKSALINRIAKKKVVESARKAGVTRN
LRWIRLDGGIDLLDAPGVIPPNLENQKSALNLALCDDIGEAAYEIESVAIEFLKIIFKLKEDKNANISLKKISNRYGVDI
LKSFDSPHEWIDLVALKHTSGDRRRMAYKLLEDYRNQMLGKIALEVPR

Specific function: Binds GTP and GDP [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI296317324, Length=297, Percent_Identity=25.2525252525253, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI9506611, Length=297, Percent_Identity=25.2525252525253, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI45643129, Length=192, Percent_Identity=29.1666666666667, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI45643127, Length=192, Percent_Identity=29.1666666666667, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI45593130, Length=192, Percent_Identity=29.1666666666667, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI7019419, Length=234, Percent_Identity=26.9230769230769, Blast_Score=76, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI193211047, Length=233, Percent_Identity=31.7596566523605, Blast_Score=98, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI25143545, Length=201, Percent_Identity=26.3681592039801, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI115535155, Length=201, Percent_Identity=26.3681592039801, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71982363, Length=201, Percent_Identity=26.3681592039801, Blast_Score=79, Evalue=3e-15,
Organism=Saccharomyces cerevisiae, GI6320842, Length=184, Percent_Identity=31.5217391304348, Blast_Score=76, Evalue=7e-15,
Organism=Saccharomyces cerevisiae, GI6324381, Length=170, Percent_Identity=30.5882352941176, Blast_Score=70, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6323744, Length=217, Percent_Identity=27.6497695852535, Blast_Score=67, Evalue=3e-12,
Organism=Drosophila melanogaster, GI85815858, Length=206, Percent_Identity=27.6699029126214, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI19922460, Length=173, Percent_Identity=27.1676300578035, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 32833; Mature: 32833

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIPTIQWYPGHIAKAEKKLSAVISRVDLIIEVRDARIPLSTGHPHLNQWITNKKHILVI
CCCCCEEECCCHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCHHHHHHCCCCEEEEE
NRADMIAPETIINWNTWFKKYDIYPLWCDAKNGKGIKEICKSAKESRLSIDKRRLSRGMK
ECCCCCCCHHEECCHHHHHEECCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCE
VRPIRALTLGFPNVGKSALINRIAKKKVVESARKAGVTRNLRWIRLDGGIDLLDAPGVIP
ECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCCC
PNLENQKSALNLALCDDIGEAAYEIESVAIEFLKIIFKLKEDKNANISLKKISNRYGVDI
CCCCCCHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHCHHH
LKSFDSPHEWIDLVALKHTSGDRRRMAYKLLEDYRNQMLGKIALEVPR
HHHCCCHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHEECCC
>Mature Secondary Structure
MEIPTIQWYPGHIAKAEKKLSAVISRVDLIIEVRDARIPLSTGHPHLNQWITNKKHILVI
CCCCCEEECCCHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCHHHHHHCCCCEEEEE
NRADMIAPETIINWNTWFKKYDIYPLWCDAKNGKGIKEICKSAKESRLSIDKRRLSRGMK
ECCCCCCCHHEECCHHHHHEECCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCE
VRPIRALTLGFPNVGKSALINRIAKKKVVESARKAGVTRNLRWIRLDGGIDLLDAPGVIP
ECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCCC
PNLENQKSALNLALCDDIGEAAYEIESVAIEFLKIIFKLKEDKNANISLKKISNRYGVDI
CCCCCCHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHCHHH
LKSFDSPHEWIDLVALKHTSGDRRRMAYKLLEDYRNQMLGKIALEVPR
HHHCCCHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]