| Definition | Prochlorococcus marinus str. MIT 9515, complete genome. |
|---|---|
| Accession | NC_008817 |
| Length | 1,704,176 |
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The map label for this gene is 123965348
Identifier: 123965348
GI number: 123965348
Start: 114582
End: 115517
Strand: Reverse
Name: 123965348
Synonym: P9515_01131
Alternate gene names: NA
Gene position: 115517-114582 (Counterclockwise)
Preceding gene: 123965350
Following gene: 123965345
Centisome position: 6.78
GC content: 29.06
Gene sequence:
>936_bases ATGGCTATTAAGACTTTAAAAAGTAGAAATAAAAAAGATTTAAAATGGCCAAAAATTATAATTGCTGTTATTAGCACCAT TGGATTAGTTGATACAGGTTCAATTACATTAAAAAATTGGGGAGTATTGAAATCTCTTTCATGTCCTGGAATTAATAATG GTTGTGAAAAAGTTTTAAATAGCCCTTGGGGTACATTATTTGAGAATAGTCAATTTAATATTCCCCTCTCATTAGCAGGG GTTATTACTTATAGTTTGATACTAGGATTTTCAATATTTTTATCACTGAATATAATTTCTCACAAAGAAAAATTAAACAA GCTTCTATGGTGGTTAATATTTTTAATCTCTTGTGCTTCTTCTGTTTTTAGCATCCTATTGATAAATATAATGTTTTTTA AAATCAAGGCTTATTGTTTTTTTTGTATACTTTCGGCAATTATATCTATTTCCATTTTTATTTTCTCTATGATTGGTGCA AAGTTTGAAAGTCGGGAACCTATGTTTTTTCGTGGATTTATTGTTTTTTTAACAGTTCTTATAGGTGGATTGATATGGTC TAATAATGTTGACCCTTCTAATGCAATTGATATTTCTAATAGCTCAGAAAAAGTATCCCCTGCAATCACCACATTAAGCT CTCCCCAAAAAGTAAAGTTTGCTAAATTTCTTAGTGATAATAACATTAAAATGTTTAGTGCATATTGGTGTCCTCATTGC CTTGATCAAAAAAAATTATTTGGCAAAAAAGCAGTTAAAGAATTAACAGTTATAGAGTGCGCCAAAGATGGAAAAGATAA TCAATATAAACTTTGCAGAGAAAAACAGATTGAAGGGTTTCCATCATGGGAAATTAACGGTGAGATATATAGTGGTGTTA AAGATTTAAATGAATTGGCAACCATTACTGGATATGAAGGAGATTCTAATTTTTAA
Upstream 100 bases:
>100_bases AGATATTATATAAGAAATAATTAACAAAGAAATTTGTTTATAAGTCCCGTTCAAAGATAATATTAGGACAGATTCTGAAA AATACAAACATTTAAAATCT
Downstream 100 bases:
>100_bases TAAACCTTTTAATTATTTTGTGATTTAATTGCTGCCTAGTATGACATTCCCAAATTTTTTCTTTAGAAGGATAATCGTCC CTATAATGCCCACCTCGACT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 311; Mature: 310
Protein sequence:
>311_residues MAIKTLKSRNKKDLKWPKIIIAVISTIGLVDTGSITLKNWGVLKSLSCPGINNGCEKVLNSPWGTLFENSQFNIPLSLAG VITYSLILGFSIFLSLNIISHKEKLNKLLWWLIFLISCASSVFSILLINIMFFKIKAYCFFCILSAIISISIFIFSMIGA KFESREPMFFRGFIVFLTVLIGGLIWSNNVDPSNAIDISNSSEKVSPAITTLSSPQKVKFAKFLSDNNIKMFSAYWCPHC LDQKKLFGKKAVKELTVIECAKDGKDNQYKLCREKQIEGFPSWEINGEIYSGVKDLNELATITGYEGDSNF
Sequences:
>Translated_311_residues MAIKTLKSRNKKDLKWPKIIIAVISTIGLVDTGSITLKNWGVLKSLSCPGINNGCEKVLNSPWGTLFENSQFNIPLSLAG VITYSLILGFSIFLSLNIISHKEKLNKLLWWLIFLISCASSVFSILLINIMFFKIKAYCFFCILSAIISISIFIFSMIGA KFESREPMFFRGFIVFLTVLIGGLIWSNNVDPSNAIDISNSSEKVSPAITTLSSPQKVKFAKFLSDNNIKMFSAYWCPHC LDQKKLFGKKAVKELTVIECAKDGKDNQYKLCREKQIEGFPSWEINGEIYSGVKDLNELATITGYEGDSNF >Mature_310_residues AIKTLKSRNKKDLKWPKIIIAVISTIGLVDTGSITLKNWGVLKSLSCPGINNGCEKVLNSPWGTLFENSQFNIPLSLAGV ITYSLILGFSIFLSLNIISHKEKLNKLLWWLIFLISCASSVFSILLINIMFFKIKAYCFFCILSAIISISIFIFSMIGAK FESREPMFFRGFIVFLTVLIGGLIWSNNVDPSNAIDISNSSEKVSPAITTLSSPQKVKFAKFLSDNNIKMFSAYWCPHCL DQKKLFGKKAVKELTVIECAKDGKDNQYKLCREKQIEGFPSWEINGEIYSGVKDLNELATITGYEGDSNF
Specific function: Unknown
COG id: COG4243
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34841; Mature: 34710
Theoretical pI: Translated: 9.25; Mature: 9.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIKTLKSRNKKDLKWPKIIIAVISTIGLVDTGSITLKNWGVLKSLSCPGINNGCEKVLN CCCCCHHCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCHHCCCCCCCCHHHHHHHC SPWGTLFENSQFNIPLSLAGVITYSLILGFSIFLSLNIISHKEKLNKLLWWLIFLISCAS CCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SVFSILLINIMFFKIKAYCFFCILSAIISISIFIFSMIGAKFESREPMFFRGFIVFLTVL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH IGGLIWSNNVDPSNAIDISNSSEKVSPAITTLSSPQKVKFAKFLSDNNIKMFSAYWCPHC HHHHHHCCCCCCCCCEECCCCCCHHHHHHHHCCCCCHHHHHHHHCCCCEEEEEECCCHHH LDQKKLFGKKAVKELTVIECAKDGKDNQYKLCREKQIEGFPSWEINGEIYSGVKDLNELA CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHH TITGYEGDSNF HHCCCCCCCCC >Mature Secondary Structure AIKTLKSRNKKDLKWPKIIIAVISTIGLVDTGSITLKNWGVLKSLSCPGINNGCEKVLN CCCCHHCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCHHCCCCCCCCHHHHHHHC SPWGTLFENSQFNIPLSLAGVITYSLILGFSIFLSLNIISHKEKLNKLLWWLIFLISCAS CCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SVFSILLINIMFFKIKAYCFFCILSAIISISIFIFSMIGAKFESREPMFFRGFIVFLTVL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH IGGLIWSNNVDPSNAIDISNSSEKVSPAITTLSSPQKVKFAKFLSDNNIKMFSAYWCPHC HHHHHHCCCCCCCCCEECCCCCCHHHHHHHHCCCCCHHHHHHHHCCCCEEEEEECCCHHH LDQKKLFGKKAVKELTVIECAKDGKDNQYKLCREKQIEGFPSWEINGEIYSGVKDLNELA CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHH TITGYEGDSNF HHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA