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The map label for this gene is atpD [H]

Identifier: 121999208

GI number: 121999208

Start: 2670068

End: 2671444

Strand: Reverse

Name: atpD [H]

Synonym: Hhal_2430

Alternate gene names: 121999208

Gene position: 2671444-2670068 (Counterclockwise)

Preceding gene: 121999209

Following gene: 121999207

Centisome position: 99.74

GC content: 65.14

Gene sequence:

>1377_bases
ATGAGCGCTGGAAAGATCGTTCAGGTGATTGGTGCAGTGGTCGACGTGGAGTTTCCGCGTGACCAGGTGCCGCAGATCTA
CGACGCCCTCGTGGTCGACGAGCGGGGCCTGACCCTCGAGGTCCAGCAGCAGCTGGGCGATGGCGTCGTCCGCACGATCG
CCATGGGGTCCTCCGACGGGCTGACGCGCTCGGAGAAGGTCTCGAACACCGGTAACCCGATTTCCGTGCCGGTGGGCCAG
GGGACCCTGGGGCGGATCATGGACGTGCTTGGCGAGCCCGTGGACGAGGCCGGCGAGGTCAAGACCGACGAGCGCTGGTC
GATCCACCGCAATGCGCCGAGCTACGAGGAGCAGTCCGGTGGTCAGGAGCTGCTGGAGACCGGCATCAAGGTCATCGACC
TGCTCTGCCCGTTCGCGAAGGGCGGCAAGGTCGGGCTGTTTGGCGGTGCGGGTGTCGGCAAGACCGTCAACATGATGGAG
CTCATCCGCAACATCGCGGTGGAGCACTCCGGCTACTCGGTCTTTGCTGGCGTCGGCGAGCGGACCCGCGAGGGCAACGA
CTTCTACCACGAGATGAAGGACTCCAACGTCCTCGACAAGGTCTCGCTGGTCTACGGCCAGATGAACGAGCCGCCGGGTA
ACCGTCTGCGCGTCGCGCTGACCGGCCTCACCATGGCCGAGTACTTCCGTGACGAGGGGCGTGACGTGCTGATGTTCATC
GACAACATCTACCGTTACACGCTGGCCGGTCAGGAGGTCTCGGCGCTGCTCGGCCGTATGCCCTCGGCGGTGGGTTATCA
GCCGACGCTGGCGGAGGAGATGGGCAAGCTCCAGGAGCGCATTACCTCCACGAAGACCGGCTCCATCACCTCCGTCCAGG
CAGTCTACGTCCCGGCCGACGACCTCACCGACCCGGCGCCGGCGACGACGTTCGCTCACCTGGACGCCACCATCGTGCTG
TCGCGCCAGATCGCCGAGCTGGGCATCTACCCGGCCGTCGACCCGCTGGACTCCACCTCGCGGCAGCTCGACCCGCTGGT
CATCGGCCAGGAGCACTACGACGTCGCCCGCGGCGTTCAGGGCGTCCTGCAGCGCTACAAGGAGCTCAAGGACATCATCG
CGATCCTGGGCATGGACGAGCTCTCCGAAGAGGACAAGCTCACCGTCTCCCGGGCGCGTAAGATCCAACGCTTCCTGTCC
CAGCCGTTCTTCGTCGCAGAGGTGTTTACCGGTATGCCCGGTAAGTACGTCTCGCTGAAGGACACCGTCGCGTCCTTCAA
GGCGATCATCGACGGCGAGTACGACCACCTGCCCGAGCAGGCGTTCTACATGGTCGGTACCGTCGAAGAGGCCGCCGAGA
AGGCCAAGAACCTGTAA

Upstream 100 bases:

>100_bases
GAGATCGTCTCGGGCGCCGAGGCCGTGTCGGGTTAATGCTGATTTCCAATATCAACGGCGGGCCCATGAGGCCCGCGAGA
AGCTATCTGAGGGGATCCGA

Downstream 100 bases:

>100_bases
TCCGGGGGTGCCATGAGCACGCTCCAAGTCGACATCGTAAGTGCTGAAGAGCAGCTGTACGCCGGCCAGGCGAGCATGGT
CATTGCGCCGGCGGCCGAGG

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 458; Mature: 457

Protein sequence:

>458_residues
MSAGKIVQVIGAVVDVEFPRDQVPQIYDALVVDERGLTLEVQQQLGDGVVRTIAMGSSDGLTRSEKVSNTGNPISVPVGQ
GTLGRIMDVLGEPVDEAGEVKTDERWSIHRNAPSYEEQSGGQELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMME
LIRNIAVEHSGYSVFAGVGERTREGNDFYHEMKDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEYFRDEGRDVLMFI
DNIYRYTLAGQEVSALLGRMPSAVGYQPTLAEEMGKLQERITSTKTGSITSVQAVYVPADDLTDPAPATTFAHLDATIVL
SRQIAELGIYPAVDPLDSTSRQLDPLVIGQEHYDVARGVQGVLQRYKELKDIIAILGMDELSEEDKLTVSRARKIQRFLS
QPFFVAEVFTGMPGKYVSLKDTVASFKAIIDGEYDHLPEQAFYMVGTVEEAAEKAKNL

Sequences:

>Translated_458_residues
MSAGKIVQVIGAVVDVEFPRDQVPQIYDALVVDERGLTLEVQQQLGDGVVRTIAMGSSDGLTRSEKVSNTGNPISVPVGQ
GTLGRIMDVLGEPVDEAGEVKTDERWSIHRNAPSYEEQSGGQELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMME
LIRNIAVEHSGYSVFAGVGERTREGNDFYHEMKDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEYFRDEGRDVLMFI
DNIYRYTLAGQEVSALLGRMPSAVGYQPTLAEEMGKLQERITSTKTGSITSVQAVYVPADDLTDPAPATTFAHLDATIVL
SRQIAELGIYPAVDPLDSTSRQLDPLVIGQEHYDVARGVQGVLQRYKELKDIIAILGMDELSEEDKLTVSRARKIQRFLS
QPFFVAEVFTGMPGKYVSLKDTVASFKAIIDGEYDHLPEQAFYMVGTVEEAAEKAKNL
>Mature_457_residues
SAGKIVQVIGAVVDVEFPRDQVPQIYDALVVDERGLTLEVQQQLGDGVVRTIAMGSSDGLTRSEKVSNTGNPISVPVGQG
TLGRIMDVLGEPVDEAGEVKTDERWSIHRNAPSYEEQSGGQELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMMEL
IRNIAVEHSGYSVFAGVGERTREGNDFYHEMKDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEYFRDEGRDVLMFID
NIYRYTLAGQEVSALLGRMPSAVGYQPTLAEEMGKLQERITSTKTGSITSVQAVYVPADDLTDPAPATTFAHLDATIVLS
RQIAELGIYPAVDPLDSTSRQLDPLVIGQEHYDVARGVQGVLQRYKELKDIIAILGMDELSEEDKLTVSRARKIQRFLSQ
PFFVAEVFTGMPGKYVSLKDTVASFKAIIDGEYDHLPEQAFYMVGTVEEAAEKAKNL

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=466, Percent_Identity=71.0300429184549, Blast_Score=653, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=321, Percent_Identity=28.9719626168224, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI19913428, Length=414, Percent_Identity=24.3961352657005, Blast_Score=115, Evalue=9e-26,
Organism=Homo sapiens, GI19913426, Length=397, Percent_Identity=24.1813602015113, Blast_Score=112, Evalue=6e-25,
Organism=Homo sapiens, GI50345984, Length=303, Percent_Identity=25.0825082508251, Blast_Score=106, Evalue=5e-23,
Organism=Homo sapiens, GI4757810, Length=303, Percent_Identity=25.0825082508251, Blast_Score=106, Evalue=5e-23,
Organism=Escherichia coli, GI1790170, Length=461, Percent_Identity=85.0325379609544, Blast_Score=801, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=302, Percent_Identity=30.794701986755, Blast_Score=138, Evalue=9e-34,
Organism=Escherichia coli, GI1790172, Length=420, Percent_Identity=25, Blast_Score=119, Evalue=4e-28,
Organism=Caenorhabditis elegans, GI25144756, Length=466, Percent_Identity=69.0987124463519, Blast_Score=638, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17565854, Length=324, Percent_Identity=29.320987654321, Blast_Score=127, Evalue=1e-29,
Organism=Caenorhabditis elegans, GI17510931, Length=349, Percent_Identity=25.5014326647564, Blast_Score=116, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI17570191, Length=404, Percent_Identity=24.009900990099, Blast_Score=115, Evalue=4e-26,
Organism=Caenorhabditis elegans, GI71988080, Length=303, Percent_Identity=24.7524752475248, Blast_Score=108, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI71988063, Length=303, Percent_Identity=24.7524752475248, Blast_Score=108, Evalue=8e-24,
Organism=Caenorhabditis elegans, GI71988074, Length=264, Percent_Identity=23.4848484848485, Blast_Score=86, Evalue=5e-17,
Organism=Saccharomyces cerevisiae, GI6322581, Length=455, Percent_Identity=70.3296703296703, Blast_Score=645, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319603, Length=408, Percent_Identity=26.7156862745098, Blast_Score=130, Evalue=3e-31,
Organism=Saccharomyces cerevisiae, GI6319370, Length=372, Percent_Identity=26.6129032258064, Blast_Score=119, Evalue=9e-28,
Organism=Saccharomyces cerevisiae, GI6320016, Length=259, Percent_Identity=28.1853281853282, Blast_Score=93, Evalue=8e-20,
Organism=Drosophila melanogaster, GI24638766, Length=464, Percent_Identity=70.9051724137931, Blast_Score=649, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=465, Percent_Identity=65.5913978494624, Blast_Score=595, Evalue=1e-170,
Organism=Drosophila melanogaster, GI20129479, Length=334, Percent_Identity=28.1437125748503, Blast_Score=124, Evalue=1e-28,
Organism=Drosophila melanogaster, GI24583988, Length=353, Percent_Identity=26.9121813031161, Blast_Score=124, Evalue=1e-28,
Organism=Drosophila melanogaster, GI24583986, Length=353, Percent_Identity=26.9121813031161, Blast_Score=124, Evalue=1e-28,
Organism=Drosophila melanogaster, GI24583984, Length=353, Percent_Identity=26.9121813031161, Blast_Score=124, Evalue=1e-28,
Organism=Drosophila melanogaster, GI24583992, Length=324, Percent_Identity=28.3950617283951, Blast_Score=123, Evalue=2e-28,
Organism=Drosophila melanogaster, GI281361666, Length=395, Percent_Identity=24.5569620253165, Blast_Score=115, Evalue=5e-26,
Organism=Drosophila melanogaster, GI24646341, Length=395, Percent_Identity=24.5569620253165, Blast_Score=115, Evalue=5e-26,
Organism=Drosophila melanogaster, GI17136796, Length=395, Percent_Identity=24.5569620253165, Blast_Score=115, Evalue=5e-26,
Organism=Drosophila melanogaster, GI24658560, Length=303, Percent_Identity=26.0726072607261, Blast_Score=109, Evalue=5e-24,
Organism=Drosophila melanogaster, GI24638768, Length=91, Percent_Identity=58.2417582417582, Blast_Score=95, Evalue=9e-20,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 49959; Mature: 49828

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAGKIVQVIGAVVDVEFPRDQVPQIYDALVVDERGLTLEVQQQLGDGVVRTIAMGSSDG
CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEHHHHHHCCHHHHHHEECCCCC
LTRSEKVSNTGNPISVPVGQGTLGRIMDVLGEPVDEAGEVKTDERWSIHRNAPSYEEQSG
CCCHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHCC
GQELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAVEHSGYSVFAGVGE
CHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCC
RTREGNDFYHEMKDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEYFRDEGRDVLMFI
CCCCCCHHHHHHCCCCHHHHHHHHHCCCCCCCCCEEEEEEEHHHHHHHHHHCCCEEEEHH
DNIYRYTLAGQEVSALLGRMPSAVGYQPTLAEEMGKLQERITSTKTGSITSVQAVYVPAD
HHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCC
DLTDPAPATTFAHLDATIVLSRQIAELGIYPAVDPLDSTSRQLDPLVIGQEHYDVARGVQ
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCEEECCHHHHHHHHHH
GVLQRYKELKDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFFVAEVFTGMPGKYVSLK
HHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEHH
DTVASFKAIIDGEYDHLPEQAFYMVGTVEEAAEKAKNL
HHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SAGKIVQVIGAVVDVEFPRDQVPQIYDALVVDERGLTLEVQQQLGDGVVRTIAMGSSDG
CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEHHHHHHCCHHHHHHEECCCCC
LTRSEKVSNTGNPISVPVGQGTLGRIMDVLGEPVDEAGEVKTDERWSIHRNAPSYEEQSG
CCCHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHCC
GQELLETGIKVIDLLCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAVEHSGYSVFAGVGE
CHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCC
RTREGNDFYHEMKDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEYFRDEGRDVLMFI
CCCCCCHHHHHHCCCCHHHHHHHHHCCCCCCCCCEEEEEEEHHHHHHHHHHCCCEEEEHH
DNIYRYTLAGQEVSALLGRMPSAVGYQPTLAEEMGKLQERITSTKTGSITSVQAVYVPAD
HHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCC
DLTDPAPATTFAHLDATIVLSRQIAELGIYPAVDPLDSTSRQLDPLVIGQEHYDVARGVQ
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCEEECCHHHHHHHHHH
GVLQRYKELKDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFFVAEVFTGMPGKYVSLK
HHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEHH
DTVASFKAIIDGEYDHLPEQAFYMVGTVEEAAEKAKNL
HHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA