| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is exeK [H]
Identifier: 121999167
GI number: 121999167
Start: 2626194
End: 2627054
Strand: Reverse
Name: exeK [H]
Synonym: Hhal_2389
Alternate gene names: 121999167
Gene position: 2627054-2626194 (Counterclockwise)
Preceding gene: 121999169
Following gene: 121999166
Centisome position: 98.08
GC content: 66.43
Gene sequence:
>861_bases ATGAGAGCGTATGGCGATATTCCTGGCCCTCAGACTCCACCTTGGACTCAGCGCGGTGTTGCGCTGATCACGGCCCTACT GGTGGTGGCACTGGCCTCGGTGGCGGCTGTCTCGCTGACCGCCAGTCACCAGATCGACCTGCGCCGGGCGCAGACCAGCC ACGCGGCCAGCCAGGCGCAGCTCCACGCCATGAGCGTCGAGGCGCTGGCCGCCGAGGCGGTCCAGGAGGCGCAGATCGAC ACCGATCAGGCGGCGCAGATGCTCGACGAAGACTGTCGTACACCGCCTTTTACTACAGAGGTGGGGGGAGCCGTCGTGGA GGTGCGCCTGGAAGATCTCCATTGCCGGATCAACCTCAATAACCTCATCGACGAGGAGGATGAGGAGACCGAGGTCGGCT TCATCGAACTGGTCGAGGCCCTTAACCGCGACCACGGCGACTTCCGGCTGGACCCGGATGAGGTCATCCGTGCCCTGCGC GACTGGGCTGATCCCGAGGTGGAAGACGACTGGTACAGCCGGCAGGCCCCCCCCTACCGCCCTTCCAATCGGCCCTTGGC GGTGCCCAGTGAACTGCTGCAGATCCGCGGCGTGGATGCCGACTCATACCGCATCCTGGAGCCGTATGTGGCTGCGTTAC CGGAGGTGGGCACCCGGTTCAACGCCCTGGCTGCGCCGGAACGGTTGCGCGAGGCTTACAACCTGCCGGATCCCGAGGAT ATGGACCCGGGGGATGAGGGCCTGGGCGATTACGTCCAGGTGGCCCTGAGGCTGGAGGTGGACGGCCGCCTCCACCACCA GTGCAGTGTGGTGCACGCCCCGAGCGGCGAAGTGGTGGTGCGCCGTCTCCGCCCCTGTTAG
Upstream 100 bases:
>100_bases GTTGCTGATCTGCAGTGCTCGAGATTGTCGCTGCACGGCGACGCCGCCCTGCGACCGGATCGAGACGGCTTCATGACGCT CGGTGTAAGCTTGAGTGACC
Downstream 100 bases:
>100_bases CGGGGCCGAGTGGCGATGGTACGGTGACCCCATGCCCGAGTATCTGCTGATCCAGCTCCCGCGGTGCGACGATGGCCGGT ATCGCTTTGCCGTCGTTGCC
Product: general secretion pathway protein K
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 286; Mature: 286
Protein sequence:
>286_residues MRAYGDIPGPQTPPWTQRGVALITALLVVALASVAAVSLTASHQIDLRRAQTSHAASQAQLHAMSVEALAAEAVQEAQID TDQAAQMLDEDCRTPPFTTEVGGAVVEVRLEDLHCRINLNNLIDEEDEETEVGFIELVEALNRDHGDFRLDPDEVIRALR DWADPEVEDDWYSRQAPPYRPSNRPLAVPSELLQIRGVDADSYRILEPYVAALPEVGTRFNALAAPERLREAYNLPDPED MDPGDEGLGDYVQVALRLEVDGRLHHQCSVVHAPSGEVVVRRLRPC
Sequences:
>Translated_286_residues MRAYGDIPGPQTPPWTQRGVALITALLVVALASVAAVSLTASHQIDLRRAQTSHAASQAQLHAMSVEALAAEAVQEAQID TDQAAQMLDEDCRTPPFTTEVGGAVVEVRLEDLHCRINLNNLIDEEDEETEVGFIELVEALNRDHGDFRLDPDEVIRALR DWADPEVEDDWYSRQAPPYRPSNRPLAVPSELLQIRGVDADSYRILEPYVAALPEVGTRFNALAAPERLREAYNLPDPED MDPGDEGLGDYVQVALRLEVDGRLHHQCSVVHAPSGEVVVRRLRPC >Mature_286_residues MRAYGDIPGPQTPPWTQRGVALITALLVVALASVAAVSLTASHQIDLRRAQTSHAASQAQLHAMSVEALAAEAVQEAQID TDQAAQMLDEDCRTPPFTTEVGGAVVEVRLEDLHCRINLNNLIDEEDEETEVGFIELVEALNRDHGDFRLDPDEVIRALR DWADPEVEDDWYSRQAPPYRPSNRPLAVPSELLQIRGVDADSYRILEPYVAALPEVGTRFNALAAPERLREAYNLPDPED MDPGDEGLGDYVQVALRLEVDGRLHHQCSVVHAPSGEVVVRRLRPC
Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]
COG id: COG3156
COG function: function code U; Type II secretory pathway, component PulK
Gene ontology:
Cell location: Cell inner membrane (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GSP K family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005628 [H]
Pfam domain/function: PF03934 GspK [H]
EC number: NA
Molecular weight: Translated: 31604; Mature: 31604
Theoretical pI: Translated: 4.24; Mature: 4.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRAYGDIPGPQTPPWTQRGVALITALLVVALASVAAVSLTASHQIDLRRAQTSHAASQAQ CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LHAMSVEALAAEAVQEAQIDTDQAAQMLDEDCRTPPFTTEVGGAVVEVRLEDLHCRINLN HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEEEEEHH NLIDEEDEETEVGFIELVEALNRDHGDFRLDPDEVIRALRDWADPEVEDDWYSRQAPPYR HHCCCCCCCHHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHHCCCCCCCCHHCCCCCCCC PSNRPLAVPSELLQIRGVDADSYRILEPYVAALPEVGTRFNALAAPERLREAYNLPDPED CCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHCCCCCCCC MDPGDEGLGDYVQVALRLEVDGRLHHQCSVVHAPSGEVVVRRLRPC CCCCCCCHHHHHHEEEEEEECCCCCCEEEEEECCCCHHHHHHCCCC >Mature Secondary Structure MRAYGDIPGPQTPPWTQRGVALITALLVVALASVAAVSLTASHQIDLRRAQTSHAASQAQ CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LHAMSVEALAAEAVQEAQIDTDQAAQMLDEDCRTPPFTTEVGGAVVEVRLEDLHCRINLN HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEEEEEHH NLIDEEDEETEVGFIELVEALNRDHGDFRLDPDEVIRALRDWADPEVEDDWYSRQAPPYR HHCCCCCCCHHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHHCCCCCCCCHHCCCCCCCC PSNRPLAVPSELLQIRGVDADSYRILEPYVAALPEVGTRFNALAAPERLREAYNLPDPED CCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHCCCCCCCC MDPGDEGLGDYVQVALRLEVDGRLHHQCSVVHAPSGEVVVRRLRPC CCCCCCCHHHHHHEEEEEEECCCCCCEEEEEECCCCHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8407845 [H]