| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121999052
Identifier: 121999052
GI number: 121999052
Start: 2495257
End: 2495814
Strand: Reverse
Name: 121999052
Synonym: Hhal_2273
Alternate gene names: NA
Gene position: 2495814-2495257 (Counterclockwise)
Preceding gene: 121999053
Following gene: 121999051
Centisome position: 93.18
GC content: 67.74
Gene sequence:
>558_bases TTGTTGGATGAGTCCGAGCGGCTTTGGCGCTTCGCCGAGGATATCTACGCCAGGCCGGGCGTTGAGGCCGCATGCCTCAA GCTCCAGGCCCGTTACGGGCTGTCCATATCGCTCCTCCTGGCCGCCGTCTGGAGCGGCCTGGAGGGGCGGGGGCGGCTCG GTGTCTCCAGTGCAGAAGGTGCCATTCGCCGGGGCCAGGAGTGGGATCGAGAGGTCATCGCCCCGCTCCGGGCCCTGCGG CGTCACCTCAAGCTGCATCCGCCCCGCGATCTGGCGGATGACAACCACGAGCTTCGCAAGCAGCTGATCGCCGCCGAGCT TCGCGCCGAGGCGATCGAGCAGAAGCTGTTCCTTCAAGACCTGCCTGCGGACCTTCCCGCCGCCGCGGAGAGCGAACGCT GGCGCGACGCCGCCTGGAATGCCGGTGTGGTGGTGCGCCGCAAGTGTCCGACCTGCGATCCGGAAGCGGTCTCAGCGATT GCCCGGATCCTCTGCGAGGCGTGCGACGAGCTCGGGAACGAAACCGCAACCCAAGAGGTCCGAAGGGTATGGCCGTGA
Upstream 100 bases:
>100_bases CGCATGGTCTTCGGCGACGCCCAGAAGGTGGTCTCCGAGATGGTTCAGACTGTGAAGGGTATGTAAGCCGGCCCTGGGCC GGTCTGCTGGAGGCAACGGG
Downstream 100 bases:
>100_bases TGAATTCGCCGCGCGCCGCCATCCTGGCGGCGGGTGGTCTGCTGCTCACTGCCGGCTGTGCGGCCCCGGATTACCTGCTC ATCGAAGAAGCTGAGACGGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 185; Mature: 185
Protein sequence:
>185_residues MLDESERLWRFAEDIYARPGVEAACLKLQARYGLSISLLLAAVWSGLEGRGRLGVSSAEGAIRRGQEWDREVIAPLRALR RHLKLHPPRDLADDNHELRKQLIAAELRAEAIEQKLFLQDLPADLPAAAESERWRDAAWNAGVVVRRKCPTCDPEAVSAI ARILCEACDELGNETATQEVRRVWP
Sequences:
>Translated_185_residues MLDESERLWRFAEDIYARPGVEAACLKLQARYGLSISLLLAAVWSGLEGRGRLGVSSAEGAIRRGQEWDREVIAPLRALR RHLKLHPPRDLADDNHELRKQLIAAELRAEAIEQKLFLQDLPADLPAAAESERWRDAAWNAGVVVRRKCPTCDPEAVSAI ARILCEACDELGNETATQEVRRVWP >Mature_185_residues MLDESERLWRFAEDIYARPGVEAACLKLQARYGLSISLLLAAVWSGLEGRGRLGVSSAEGAIRRGQEWDREVIAPLRALR RHLKLHPPRDLADDNHELRKQLIAAELRAEAIEQKLFLQDLPADLPAAAESERWRDAAWNAGVVVRRKCPTCDPEAVSAI ARILCEACDELGNETATQEVRRVWP
Specific function: Unknown
COG id: COG5589
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20769; Mature: 20769
Theoretical pI: Translated: 5.80; Mature: 5.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLDESERLWRFAEDIYARPGVEAACLKLQARYGLSISLLLAAVWSGLEGRGRLGVSSAEG CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHH AIRRGQEWDREVIAPLRALRRHLKLHPPRDLADDNHELRKQLIAAELRAEAIEQKLFLQD HHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH LPADLPAAAESERWRDAAWNAGVVVRRKCPTCDPEAVSAIARILCEACDELGNETATQEV CCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHH RRVWP HHCCC >Mature Secondary Structure MLDESERLWRFAEDIYARPGVEAACLKLQARYGLSISLLLAAVWSGLEGRGRLGVSSAEG CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHH AIRRGQEWDREVIAPLRALRRHLKLHPPRDLADDNHELRKQLIAAELRAEAIEQKLFLQD HHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH LPADLPAAAESERWRDAAWNAGVVVRRKCPTCDPEAVSAIARILCEACDELGNETATQEV CCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHH RRVWP HHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA