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The map label for this gene is radA [C]

Identifier: 121999007

GI number: 121999007

Start: 2441976

End: 2443430

Strand: Reverse

Name: radA [C]

Synonym: Hhal_2228

Alternate gene names: 121999007

Gene position: 2443430-2441976 (Counterclockwise)

Preceding gene: 121999008

Following gene: 121999006

Centisome position: 91.23

GC content: 67.42

Gene sequence:

>1455_bases
ATGGCACAAGGCAATAGCTCAGCGGCGATCGGCGCCCGGCGGCGCGGCGCACAGACCGCACCCACAGGGATCGAGGGGCT
GGATTTCATCCTCGACGGAGGGTTGCCCGAGGGGCAGCCCACCCTGCTGCGTGGTGGCCCCGGTGCCGGGAAGACAGCCA
TCGCGCTGACCTTCTTCTGCCACGGGCTCGAGCAGGGAGAGCCGTCGGTTCTGGCCACCTTCGACGAGTCGCCCGCGGCA
CTGACCCGCCATGCCGAAGCCTTGGGGTTCCCCCTGGCGGAGCACCTGGCCGCTGGACGCGGTCGCATCCTCGATATGCG
CCCGGATCGCTCCGAGCTGGTCTCCGGCGAGGAGATCGAGCTGACCGCGCTGCTCGCGCGCATCGGTCACGCCCTGGACG
CCCTCGGTGCCAAGCGCCTCGTGGTCGACGCCATCGACGGCATGGACGAGAGCTTCGCGCCGGGCAGCAGTCTGCGCGCC
GAGCTGACGCGGGTCTTCGACTGGATCCGCGAGCGCGATGCCACCACCCTGATCACCTCCGGCGAACACTCTGGCTTCAG
CGAGCGCTTTGGGCTGGAGGATTACATCGCCGACTGCGTGATCCTCCTGCGTCAGGAGATGTGCGATCGGCGCATGACGC
GTCTGCTGCGCATCCTCAAGCGCCGGGGTGGCAGTCACGGCACCAACGAGTTCCCGTTCCTGCTCGACGGCGAGGGGGTG
TTCCTGGCGCCGATTACCGGAACCCGGCTCGAGGCCTACCCCTCCGCCGAGCGGCATCGTACCGGGGTCGCGGGGCTCGA
CGCGATGCTCGGCGGGGGCGGACCCTACCGCGGCTCAGCGGTCATGATCTCCGGGCAGTCGGGTACTGGCAAGACGAGCT
TTGCAGCGACGTTCGCCGGTGCCGCCTGCGAGGCCGGTGACAGGGTGCTCTACCTCAGCTTCGAAGAGGCCACCGACGAG
CTGCTGCGCAACCAGCGCAGCGTGGGCGTGGATCTGGCCCCGCATATCGAAAGCGGCCGGCTGGTGCTGGAGCCGTTGCT
GGCCGTGGAGCTGGGCTGGGAGGAGCACCTGCTGCGGGTGATGCGCGCGGTGAAGGAGAAGCTCCCAGCGGTGGTGATCC
TGGACCCGGCGAGCGCCATGAGCGATCGCCAGAAAGATCGTCAGGGCAAGGAGATGCTCCTGCGGTTATTCTATATGCTC
AAGCGCGAGGGCGTGACGGTCGTGGCGACGGAGCTGTTGCCTGACTACAGTGACGGCTTCAGTACGATGGACGTCTCTTC
CATCGTGGATGTGTGGATCAAGTTGCGTCGCGACGAGCGGGACGGCAAGCTGCGGCGCTTGTTGAACGTGGTCAAGGCTC
GCGGCCTGCCGACCTCGGACCGGATTCAGGAGTACTACCTCTCCAGCGACGGGGTACACGTGGTCAACACTGCCGATACG
GGAGACGGGTCGTGA

Upstream 100 bases:

>100_bases
GTTCCAGCGGATCCGCCTCAAGCTGACACCCCGCGTGGCCGGCCTTGGACCTGTCGGCGCTTTTTGGCACTCTGCCTGGT
GGGTCATCACGGAGTACGGC

Downstream 100 bases:

>100_bases
GCGAGCTGGTCCTGCGGCTCTACATCGCCGGGCGGACCCCGGCGGCCGAGCGTGCCATCCGCAATCTGGAGCGGATCATC
GAGGAGGCCTACGGCGATGA

Product: putative circadian clock protein, KaiC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 484; Mature: 483

Protein sequence:

>484_residues
MAQGNSSAAIGARRRGAQTAPTGIEGLDFILDGGLPEGQPTLLRGGPGAGKTAIALTFFCHGLEQGEPSVLATFDESPAA
LTRHAEALGFPLAEHLAAGRGRILDMRPDRSELVSGEEIELTALLARIGHALDALGAKRLVVDAIDGMDESFAPGSSLRA
ELTRVFDWIRERDATTLITSGEHSGFSERFGLEDYIADCVILLRQEMCDRRMTRLLRILKRRGGSHGTNEFPFLLDGEGV
FLAPITGTRLEAYPSAERHRTGVAGLDAMLGGGGPYRGSAVMISGQSGTGKTSFAATFAGAACEAGDRVLYLSFEEATDE
LLRNQRSVGVDLAPHIESGRLVLEPLLAVELGWEEHLLRVMRAVKEKLPAVVILDPASAMSDRQKDRQGKEMLLRLFYML
KREGVTVVATELLPDYSDGFSTMDVSSIVDVWIKLRRDERDGKLRRLLNVVKARGLPTSDRIQEYYLSSDGVHVVNTADT
GDGS

Sequences:

>Translated_484_residues
MAQGNSSAAIGARRRGAQTAPTGIEGLDFILDGGLPEGQPTLLRGGPGAGKTAIALTFFCHGLEQGEPSVLATFDESPAA
LTRHAEALGFPLAEHLAAGRGRILDMRPDRSELVSGEEIELTALLARIGHALDALGAKRLVVDAIDGMDESFAPGSSLRA
ELTRVFDWIRERDATTLITSGEHSGFSERFGLEDYIADCVILLRQEMCDRRMTRLLRILKRRGGSHGTNEFPFLLDGEGV
FLAPITGTRLEAYPSAERHRTGVAGLDAMLGGGGPYRGSAVMISGQSGTGKTSFAATFAGAACEAGDRVLYLSFEEATDE
LLRNQRSVGVDLAPHIESGRLVLEPLLAVELGWEEHLLRVMRAVKEKLPAVVILDPASAMSDRQKDRQGKEMLLRLFYML
KREGVTVVATELLPDYSDGFSTMDVSSIVDVWIKLRRDERDGKLRRLLNVVKARGLPTSDRIQEYYLSSDGVHVVNTADT
GDGS
>Mature_483_residues
AQGNSSAAIGARRRGAQTAPTGIEGLDFILDGGLPEGQPTLLRGGPGAGKTAIALTFFCHGLEQGEPSVLATFDESPAAL
TRHAEALGFPLAEHLAAGRGRILDMRPDRSELVSGEEIELTALLARIGHALDALGAKRLVVDAIDGMDESFAPGSSLRAE
LTRVFDWIRERDATTLITSGEHSGFSERFGLEDYIADCVILLRQEMCDRRMTRLLRILKRRGGSHGTNEFPFLLDGEGVF
LAPITGTRLEAYPSAERHRTGVAGLDAMLGGGGPYRGSAVMISGQSGTGKTSFAATFAGAACEAGDRVLYLSFEEATDEL
LRNQRSVGVDLAPHIESGRLVLEPLLAVELGWEEHLLRVMRAVKEKLPAVVILDPASAMSDRQKDRQGKEMLLRLFYMLK
REGVTVVATELLPDYSDGFSTMDVSSIVDVWIKLRRDERDGKLRRLLNVVKARGLPTSDRIQEYYLSSDGVHVVNTADTG
DGS

Specific function: May Play A Role In The Repair Of Endogenous Alkylation Damage. [C]

COG id: COG0467

COG function: function code T; RecA-superfamily ATPases implicated in signal transduction

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 kaiC domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR010624 [H]

Pfam domain/function: PF06745 KaiC [H]

EC number: NA

Molecular weight: Translated: 52344; Mature: 52213

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: PS51146 KAIC ; PS00675 SIGMA54_INTERACT_1 ; PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQGNSSAAIGARRRGAQTAPTGIEGLDFILDGGLPEGQPTLLRGGPGAGKTAIALTFFC
CCCCCCCCCCCHHHCCCCCCCCCCCCCHHEEECCCCCCCCEEEECCCCCCHHHHHHHHHH
HGLEQGEPSVLATFDESPAALTRHAEALGFPLAEHLAAGRGRILDMRPDRSELVSGEEIE
HHCCCCCCCEEEEECCCCHHHHHHHHHHCCCHHHHHHCCCCCEEECCCCHHHHCCCCCHH
LTALLARIGHALDALGAKRLVVDAIDGMDESFAPGSSLRAELTRVFDWIRERDATTLITS
HHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEC
GEHSGFSERFGLEDYIADCVILLRQEMCDRRMTRLLRILKRRGGSHGTNEFPFLLDGEGV
CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCE
FLAPITGTRLEAYPSAERHRTGVAGLDAMLGGGGPYRGSAVMISGQSGTGKTSFAATFAG
EEECCCCCCEECCCCHHHHCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHCC
AACEAGDRVLYLSFEEATDELLRNQRSVGVDLAPHIESGRLVLEPLLAVELGWEEHLLRV
HHHCCCCEEEEEEHHHHHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHCCHHHHHHHH
MRAVKEKLPAVVILDPASAMSDRQKDRQGKEMLLRLFYMLKREGVTVVATELLPDYSDGF
HHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHCCCCCCCC
STMDVSSIVDVWIKLRRDERDGKLRRLLNVVKARGLPTSDRIQEYYLSSDGVHVVNTADT
CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEECCCC
GDGS
CCCC
>Mature Secondary Structure 
AQGNSSAAIGARRRGAQTAPTGIEGLDFILDGGLPEGQPTLLRGGPGAGKTAIALTFFC
CCCCCCCCCCHHHCCCCCCCCCCCCCHHEEECCCCCCCCEEEECCCCCCHHHHHHHHHH
HGLEQGEPSVLATFDESPAALTRHAEALGFPLAEHLAAGRGRILDMRPDRSELVSGEEIE
HHCCCCCCCEEEEECCCCHHHHHHHHHHCCCHHHHHHCCCCCEEECCCCHHHHCCCCCHH
LTALLARIGHALDALGAKRLVVDAIDGMDESFAPGSSLRAELTRVFDWIRERDATTLITS
HHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEC
GEHSGFSERFGLEDYIADCVILLRQEMCDRRMTRLLRILKRRGGSHGTNEFPFLLDGEGV
CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCE
FLAPITGTRLEAYPSAERHRTGVAGLDAMLGGGGPYRGSAVMISGQSGTGKTSFAATFAG
EEECCCCCCEECCCCHHHHCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHCC
AACEAGDRVLYLSFEEATDELLRNQRSVGVDLAPHIESGRLVLEPLLAVELGWEEHLLRV
HHHCCCCEEEEEEHHHHHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHCCHHHHHHHH
MRAVKEKLPAVVILDPASAMSDRQKDRQGKEMLLRLFYMLKREGVTVVATELLPDYSDGF
HHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHCCCCCCCC
STMDVSSIVDVWIKLRRDERDGKLRRLLNVVKARGLPTSDRIQEYYLSSDGVHVVNTADT
CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEECCCC
GDGS
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]