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The map label for this gene is sodA [H]

Identifier: 121998934

GI number: 121998934

Start: 2367625

End: 2368227

Strand: Reverse

Name: sodA [H]

Synonym: Hhal_2155

Alternate gene names: 121998934

Gene position: 2368227-2367625 (Counterclockwise)

Preceding gene: 121998935

Following gene: 121998932

Centisome position: 88.42

GC content: 65.01

Gene sequence:

>603_bases
ATGGCCTATCAACTGCCCGATCTGCCCTACGACTACGGCGATCTGGAGCGCTCCATCGACGCCCAGACGATGGAGATCCA
CCACACTAAGCACCACAACACCTACGTCACCAAGCTCAACGACGCCGTCTCGGGGACCGAGCACGACGGGCAGCGCCTGG
AGGATCTGCTTGCGCGTGTCTCGAACCTGCCGGTGGCGATCCGCAACAACGGGGGCGGCCACTGGAATCACGATCTGTTC
TGGCGGGTCATGTCGCCGAACGGTGGCGGCAAGCCGTCGGGTGATCTGGCTGCGGCCATCGATTCGGCCTTCGGCTCCTT
CGACCAGTTCCGCGAGCAGTTCACGCAGGCCGCCCTGGGGCGGTTCGGCTCCGGCTGGGCGTGGCTGATCAAGACCTCGC
GGGGCCTGGAGATCACCGACACCCCCAACCAGGACAATCCGCTGATGGATGTAGCGCCCAAGCAGGGCACGCCGCTGCTC
GGTCTGGACGTCTGGGAGCACGCCTACTATCTGCGCTACCAGAACCGGCGGCCCGACTACGTCGAGGCGTGGTGGGACGT
GGTCAACTGGGATGAGGTCACGAAGCGCTTCGAGGCCTCGTAA

Upstream 100 bases:

>100_bases
GGATTGATGCCGCGGCCATGGCCGCCCATGATGAGGGTGTACGCCCTGCGCAGTCGCGCACAGGCGTTACGACCGCGCGC
GAAGGAAAGGAGACCGCCTG

Downstream 100 bases:

>100_bases
CACGCCGGGTATAGAACCCCCCTCGCCCGGCCGCGGCGCCGGGCGAGGGGATTCCTAGCGGTGGGTCCCGCTCAGTCTTC
CGGCTCGTAGCCGAGGTTCG

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 199

Protein sequence:

>200_residues
MAYQLPDLPYDYGDLERSIDAQTMEIHHTKHHNTYVTKLNDAVSGTEHDGQRLEDLLARVSNLPVAIRNNGGGHWNHDLF
WRVMSPNGGGKPSGDLAAAIDSAFGSFDQFREQFTQAALGRFGSGWAWLIKTSRGLEITDTPNQDNPLMDVAPKQGTPLL
GLDVWEHAYYLRYQNRRPDYVEAWWDVVNWDEVTKRFEAS

Sequences:

>Translated_200_residues
MAYQLPDLPYDYGDLERSIDAQTMEIHHTKHHNTYVTKLNDAVSGTEHDGQRLEDLLARVSNLPVAIRNNGGGHWNHDLF
WRVMSPNGGGKPSGDLAAAIDSAFGSFDQFREQFTQAALGRFGSGWAWLIKTSRGLEITDTPNQDNPLMDVAPKQGTPLL
GLDVWEHAYYLRYQNRRPDYVEAWWDVVNWDEVTKRFEAS
>Mature_199_residues
AYQLPDLPYDYGDLERSIDAQTMEIHHTKHHNTYVTKLNDAVSGTEHDGQRLEDLLARVSNLPVAIRNNGGGHWNHDLFW
RVMSPNGGGKPSGDLAAAIDSAFGSFDQFREQFTQAALGRFGSGWAWLIKTSRGLEITDTPNQDNPLMDVAPKQGTPLLG
LDVWEHAYYLRYQNRRPDYVEAWWDVVNWDEVTKRFEAS

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=204, Percent_Identity=50.9803921568627, Blast_Score=204, Evalue=6e-53,
Organism=Homo sapiens, GI67782305, Length=204, Percent_Identity=50.9803921568627, Blast_Score=204, Evalue=6e-53,
Organism=Homo sapiens, GI67782309, Length=204, Percent_Identity=43.1372549019608, Blast_Score=151, Evalue=3e-37,
Organism=Escherichia coli, GI1790342, Length=206, Percent_Identity=51.4563106796116, Blast_Score=214, Evalue=4e-57,
Organism=Escherichia coli, GI1787946, Length=200, Percent_Identity=46, Blast_Score=192, Evalue=1e-50,
Organism=Caenorhabditis elegans, GI17506561, Length=197, Percent_Identity=44.6700507614213, Blast_Score=171, Evalue=3e-43,
Organism=Caenorhabditis elegans, GI17569479, Length=198, Percent_Identity=42.4242424242424, Blast_Score=163, Evalue=5e-41,
Organism=Saccharomyces cerevisiae, GI6321796, Length=213, Percent_Identity=44.131455399061, Blast_Score=157, Evalue=9e-40,
Organism=Drosophila melanogaster, GI17136812, Length=200, Percent_Identity=46, Blast_Score=176, Evalue=1e-44,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22747; Mature: 22616

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYQLPDLPYDYGDLERSIDAQTMEIHHTKHHNTYVTKLNDAVSGTEHDGQRLEDLLARV
CCCCCCCCCCCHHHHHHCCCCCEEEEEECCCCCEEEEEECHHHCCCCCCHHHHHHHHHHH
SNLPVAIRNNGGGHWNHDLFWRVMSPNGGGKPSGDLAAAIDSAFGSFDQFREQFTQAALG
HCCCEEEECCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHH
RFGSGWAWLIKTSRGLEITDTPNQDNPLMDVAPKQGTPLLGLDVWEHAYYLRYQNRRPDY
CCCCCEEEEEECCCCEEEECCCCCCCCEEEECCCCCCCEEEHHHHHHEEEEEECCCCCCH
VEAWWDVVNWDEVTKRFEAS
HHHHHHHCCHHHHHHHHCCC
>Mature Secondary Structure 
AYQLPDLPYDYGDLERSIDAQTMEIHHTKHHNTYVTKLNDAVSGTEHDGQRLEDLLARV
CCCCCCCCCCHHHHHHCCCCCEEEEEECCCCCEEEEEECHHHCCCCCCHHHHHHHHHHH
SNLPVAIRNNGGGHWNHDLFWRVMSPNGGGKPSGDLAAAIDSAFGSFDQFREQFTQAALG
HCCCEEEECCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHH
RFGSGWAWLIKTSRGLEITDTPNQDNPLMDVAPKQGTPLLGLDVWEHAYYLRYQNRRPDY
CCCCCEEEEEECCCCEEEECCCCCCCCEEEECCCCCCCEEEHHHHHHEEEEEECCCCCCH
VEAWWDVVNWDEVTKRFEAS
HHHHHHHCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1624106 [H]