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The map label for this gene is rnk [H]

Identifier: 121998926

GI number: 121998926

Start: 2348843

End: 2349256

Strand: Reverse

Name: rnk [H]

Synonym: Hhal_2147

Alternate gene names: 121998926

Gene position: 2349256-2348843 (Counterclockwise)

Preceding gene: 121998927

Following gene: 121998924

Centisome position: 87.71

GC content: 59.9

Gene sequence:

>414_bases
ATGGAGACCAGACCAGAGATCGTGATCTCATCCCGGGATGCCGAGCGGCTTGAAAAGCTGATCGATTCCCTGCCTAAGGG
CGCCTTTCCCGGTCAAGAAGACTTGGAAAATGAGCTCGCGAGGGCGGAGATCGTAGAGCCCAATGAGGTTCCTCCGGGCG
TCGTTACCATGAATTCCACCGTGCGGTTTCGGGTCGAGGCGACGGAGGAAGAGTTTTCGCTGACGCTGGTTTATCCCAAA
GACGTGGATTCGAGTGGGGGCACCCTATCGATCTTTGCGCCGGTGGGTAGCGCTTTGCTGGGCCTGTCCCAGGGCGAGGA
GATTGAGTGGCCAAGACCGGGCGGTGGTGCTCATAGGGTCCGGATCGAGGAGATCCTGTACCAGCCCGAGCGAGCCGGTG
AGTACCACCGGTAG

Upstream 100 bases:

>100_bases
GACTGATCTTTCCCTCATGCCTGACTCGGCGTTCCTGTCGAGCGGTTGGGCAATGGCTGAACTGCCTGTCCCTGCAAAAG
AATAGAGTGACTGGAGATTC

Downstream 100 bases:

>100_bases
GGCGCGCGCGCCATCGGCGATGGTAAGACCGGATCAGCGTCCACCCTGTCAGCCCCTTAACACACGGGGGTTGACGCCGG
CGCCGATGCCTGTAGAATGC

Product: GreA/GreB family elongation factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 137

Protein sequence:

>137_residues
METRPEIVISSRDAERLEKLIDSLPKGAFPGQEDLENELARAEIVEPNEVPPGVVTMNSTVRFRVEATEEEFSLTLVYPK
DVDSSGGTLSIFAPVGSALLGLSQGEEIEWPRPGGGAHRVRIEEILYQPERAGEYHR

Sequences:

>Translated_137_residues
METRPEIVISSRDAERLEKLIDSLPKGAFPGQEDLENELARAEIVEPNEVPPGVVTMNSTVRFRVEATEEEFSLTLVYPK
DVDSSGGTLSIFAPVGSALLGLSQGEEIEWPRPGGGAHRVRIEEILYQPERAGEYHR
>Mature_137_residues
METRPEIVISSRDAERLEKLIDSLPKGAFPGQEDLENELARAEIVEPNEVPPGVVTMNSTVRFRVEATEEEFSLTLVYPK
DVDSSGGTLSIFAPVGSALLGLSQGEEIEWPRPGGGAHRVRIEEILYQPERAGEYHR

Specific function: Rnk and sspA can functionally replace P.aeruginosa alginate regulatory gene algR2 [H]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786827, Length=133, Percent_Identity=45.1127819548872, Blast_Score=114, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001437 [H]

Pfam domain/function: PF01272 GreA_GreB [H]

EC number: NA

Molecular weight: Translated: 15159; Mature: 15159

Theoretical pI: Translated: 4.28; Mature: 4.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METRPEIVISSRDAERLEKLIDSLPKGAFPGQEDLENELARAEIVEPNEVPPGVVTMNST
CCCCCCEEEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCE
VRFRVEATEEEFSLTLVYPKDVDSSGGTLSIFAPVGSALLGLSQGEEIEWPRPGGGAHRV
EEEEEEECCCCEEEEEEECCCCCCCCCEEEEECCCCHHHHCCCCCCCCCCCCCCCCCCEE
RIEEILYQPERAGEYHR
EHHHHHCCCCCCCCCCC
>Mature Secondary Structure
METRPEIVISSRDAERLEKLIDSLPKGAFPGQEDLENELARAEIVEPNEVPPGVVTMNST
CCCCCCEEEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCE
VRFRVEATEEEFSLTLVYPKDVDSSGGTLSIFAPVGSALLGLSQGEEIEWPRPGGGAHRV
EEEEEEECCCCEEEEEEECCCCCCCCCEEEEECCCCHHHHCCCCCCCCCCCCCCCCCCEE
RIEEILYQPERAGEYHR
EHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]