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The map label for this gene is rng [H]

Identifier: 121998916

GI number: 121998916

Start: 2338903

End: 2340351

Strand: Reverse

Name: rng [H]

Synonym: Hhal_2137

Alternate gene names: 121998916

Gene position: 2340351-2338903 (Counterclockwise)

Preceding gene: 121998917

Following gene: 121998915

Centisome position: 87.38

GC content: 68.74

Gene sequence:

>1449_bases
GTGAGCCAGGAGATCCTCATCAACCTGACGCCCCGCGAGACGCGGGTGGCGTTGGTCGAAAACGGTGTCCTCCAGGAGGT
CCACCTGGAGCGTGCCCGGCGCCGCGGGCTGGTGGGGAACATCTACCTGGGCCAGGTGCGGCGGGTCCTGCCCGGGATGC
AGGCCGCGTTCGTCGATGCCGGGCTGGAGCGCACCGCCTTCCTCCACGTCTCGGACCTGCAGCGGGACTCGGGAGGCCCC
CCGCCCCCCATCGACCGCCTGCTGCGCGAGCAGCAGGCCCTGCTGGTGCAGGTCATCAAGGATCCGATCGGCAACAAGGG
CGCCCGGCTCACCACCCAGATCACCGTGCCCTCGCGCTACCTGGTGCTCACCCCTCACTCCTGCGGGGTGGGGGTCTCGG
CACGGATCGAGGAGGAGGCCGAGCGCGAGCGGTTGCGCGGGGTGGCCCAGGGGTTCGACGCCGAGCGGGGCGAGGCGGGG
CTGATCTTTCGCACCGCGGCCGAGGGGGCCTCCGGGGAGGCCCTGCGGGCCGACCACGACTTCCTGGTGCGGCTTTGGGA
GAGCATCCGCCGGCGCGCCGGCGAGGCGCAGCCCGGCACCCTGGTCCACGAGGATCTGCCGTTGCTGCTGCGCGCCCTGC
GCGATCTGGCGACCCGCGATCTGGAGCGGGTGCGCGTGGACTCCCGTGAGGGGTACCTGCGCCTGGGCGACTTCTGCAAG
GATCTGCTGCCCCACATCGCCGAGCGGGTGGAGCTCTACGCCGGTGAGCGGCCGATCTTCGATCTCTACGGCGTCGAGGA
GGAGATCGAGCGGGCCCTGTCGCGCCGGGTGGATCTAAAGTCCGGCGGGCATCTGATCATCGACCAGACCGAGGCGATGA
CCACCATCGACGTGAACACCGGCGGTTTCGTCGGTAACCGTAACGTCGACGAGACCATCTTCAAGACCAACCTCGAGGCC
GCCCAGGCCATCGCCCGGCAGCTGCGTCTGCGCAATCTCGGCGGGATCATCATCGTCGACTTCATCGATATGACCGATGC
CGAGCACCGGCGCCAGGTTTTGCGGGCCCTGGAGAAAGCCCTCGAGCGCGATCACGCCAAGACCCAGATCGGTGCGGTCT
CCTCGCTGGGGCTGGTGGAGATGACCCGCAAGCGCACCCGTGAGAGCCTCGAGCAGGTCACCTGCGAGCCGTGTCCCACC
TGCCGCGGCCGCGGCACGGTGAAGAGCGCCGAGACCGTGGTCTACGAGATCTTCCGCGAGATTCTGCGCGAGGTGCGCCA
GTTCGAGTCCCAACGGGTGATCGTGCTCGCCGCCCCGTCGGTGGTGGAGGTGCTCCTTGACGAGGAGTCGACCAGCCTGG
CGCAGCTTGAAGAGTTCATCGAGCGGCCCATCGAGCTGCAGGTCGAGTCCCTCTACGTGGCCGACCAGTACGACGTGATT
CCCGTATAA

Upstream 100 bases:

>100_bases
GGAGGGCAGCTACACCGGGGTCATGGGGCTGCCGCTTTACGAGACCACGCTCCTGCTCGATAAGCTGGAGATCCCCTGGC
GCGAGCGCTGGTAGGCCCGT

Downstream 100 bases:

>100_bases
TCCGCCGTCATGGCTCCTTCGATGCGCCGCTTCGGCCTGCGCGTGCTGCGTGGCCTGCGTCCGGTGCTCCTGGTCGCGCT
GGCCGGCGCGGTCGCCCTGC

Product: ribonuclease

Products: NA

Alternate protein names: RNase G; Cytoplasmic axial filament protein [H]

Number of amino acids: Translated: 482; Mature: 481

Protein sequence:

>482_residues
MSQEILINLTPRETRVALVENGVLQEVHLERARRRGLVGNIYLGQVRRVLPGMQAAFVDAGLERTAFLHVSDLQRDSGGP
PPPIDRLLREQQALLVQVIKDPIGNKGARLTTQITVPSRYLVLTPHSCGVGVSARIEEEAERERLRGVAQGFDAERGEAG
LIFRTAAEGASGEALRADHDFLVRLWESIRRRAGEAQPGTLVHEDLPLLLRALRDLATRDLERVRVDSREGYLRLGDFCK
DLLPHIAERVELYAGERPIFDLYGVEEEIERALSRRVDLKSGGHLIIDQTEAMTTIDVNTGGFVGNRNVDETIFKTNLEA
AQAIARQLRLRNLGGIIIVDFIDMTDAEHRRQVLRALEKALERDHAKTQIGAVSSLGLVEMTRKRTRESLEQVTCEPCPT
CRGRGTVKSAETVVYEIFREILREVRQFESQRVIVLAAPSVVEVLLDEESTSLAQLEEFIERPIELQVESLYVADQYDVI
PV

Sequences:

>Translated_482_residues
MSQEILINLTPRETRVALVENGVLQEVHLERARRRGLVGNIYLGQVRRVLPGMQAAFVDAGLERTAFLHVSDLQRDSGGP
PPPIDRLLREQQALLVQVIKDPIGNKGARLTTQITVPSRYLVLTPHSCGVGVSARIEEEAERERLRGVAQGFDAERGEAG
LIFRTAAEGASGEALRADHDFLVRLWESIRRRAGEAQPGTLVHEDLPLLLRALRDLATRDLERVRVDSREGYLRLGDFCK
DLLPHIAERVELYAGERPIFDLYGVEEEIERALSRRVDLKSGGHLIIDQTEAMTTIDVNTGGFVGNRNVDETIFKTNLEA
AQAIARQLRLRNLGGIIIVDFIDMTDAEHRRQVLRALEKALERDHAKTQIGAVSSLGLVEMTRKRTRESLEQVTCEPCPT
CRGRGTVKSAETVVYEIFREILREVRQFESQRVIVLAAPSVVEVLLDEESTSLAQLEEFIERPIELQVESLYVADQYDVI
PV
>Mature_481_residues
SQEILINLTPRETRVALVENGVLQEVHLERARRRGLVGNIYLGQVRRVLPGMQAAFVDAGLERTAFLHVSDLQRDSGGPP
PPIDRLLREQQALLVQVIKDPIGNKGARLTTQITVPSRYLVLTPHSCGVGVSARIEEEAERERLRGVAQGFDAERGEAGL
IFRTAAEGASGEALRADHDFLVRLWESIRRRAGEAQPGTLVHEDLPLLLRALRDLATRDLERVRVDSREGYLRLGDFCKD
LLPHIAERVELYAGERPIFDLYGVEEEIERALSRRVDLKSGGHLIIDQTEAMTTIDVNTGGFVGNRNVDETIFKTNLEAA
QAIARQLRLRNLGGIIIVDFIDMTDAEHRRQVLRALEKALERDHAKTQIGAVSSLGLVEMTRKRTRESLEQVTCEPCPTC
RGRGTVKSAETVVYEIFREILREVRQFESQRVIVLAAPSVVEVLLDEESTSLAQLEEFIERPIELQVESLYVADQYDVIP
V

Specific function: Involved in the processing of the 5'-end of 16S rRNA. Could be involved in chromosome segregation and cell division. It may be one of the components of the cytoplasmic axial filaments bundles or merely regulate the formation of this structure [H]

COG id: COG1530

COG function: function code J; Ribonucleases G and E

Gene ontology:

Cell location: Cytoplasm, cytoskeleton [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Escherichia coli, GI87082235, Length=489, Percent_Identity=55.4192229038855, Blast_Score=516, Evalue=1e-147,
Organism=Escherichia coli, GI1787325, Length=469, Percent_Identity=38.592750533049, Blast_Score=292, Evalue=4e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR019307
- InterPro:   IPR022967
- InterPro:   IPR004659 [H]

Pfam domain/function: PF10150 RNase_E_G; PF00575 S1 [H]

EC number: 3.1.4.- [C]

Molecular weight: Translated: 54061; Mature: 53929

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQEILINLTPRETRVALVENGVLQEVHLERARRRGLVGNIYLGQVRRVLPGMQAAFVDA
CCCCEEEEECCCHHEEHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHC
GLERTAFLHVSDLQRDSGGPPPPIDRLLREQQALLVQVIKDPIGNKGARLTTQITVPSRY
CCCCEEEEEHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEE
LVLTPHSCGVGVSARIEEEAERERLRGVAQGFDAERGEAGLIFRTAAEGASGEALRADHD
EEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCHH
FLVRLWESIRRRAGEAQPGTLVHEDLPLLLRALRDLATRDLERVRVDSREGYLRLGDFCK
HHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
DLLPHIAERVELYAGERPIFDLYGVEEEIERALSRRVDLKSGGHLIIDQTEAMTTIDVNT
HHHHHHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEECCC
GGFVGNRNVDETIFKTNLEAAQAIARQLRLRNLGGIIIVDFIDMTDAEHRRQVLRALEKA
CCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHH
LERDHAKTQIGAVSSLGLVEMTRKRTRESLEQVTCEPCPTCRGRGTVKSAETVVYEIFRE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
ILREVRQFESQRVIVLAAPSVVEVLLDEESTSLAQLEEFIERPIELQVESLYVADQYDVI
HHHHHHHHCCCCEEEEECCHHHHHHHCCCCCHHHHHHHHHCCCCEEEEEEEEEECCCCCC
PV
CC
>Mature Secondary Structure 
SQEILINLTPRETRVALVENGVLQEVHLERARRRGLVGNIYLGQVRRVLPGMQAAFVDA
CCCEEEEECCCHHEEHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHC
GLERTAFLHVSDLQRDSGGPPPPIDRLLREQQALLVQVIKDPIGNKGARLTTQITVPSRY
CCCCEEEEEHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEE
LVLTPHSCGVGVSARIEEEAERERLRGVAQGFDAERGEAGLIFRTAAEGASGEALRADHD
EEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCHH
FLVRLWESIRRRAGEAQPGTLVHEDLPLLLRALRDLATRDLERVRVDSREGYLRLGDFCK
HHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
DLLPHIAERVELYAGERPIFDLYGVEEEIERALSRRVDLKSGGHLIIDQTEAMTTIDVNT
HHHHHHHHHHHHHCCCCCCCHHCCCHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEECCC
GGFVGNRNVDETIFKTNLEAAQAIARQLRLRNLGGIIIVDFIDMTDAEHRRQVLRALEKA
CCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHH
LERDHAKTQIGAVSSLGLVEMTRKRTRESLEQVTCEPCPTCRGRGTVKSAETVVYEIFRE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
ILREVRQFESQRVIVLAAPSVVEVLLDEESTSLAQLEEFIERPIELQVESLYVADQYDVI
HHHHHHHHCCCCEEEEECCHHHHHHHCCCCCHHHHHHHHHCCCCEEEEEEEEEECCCCCC
PV
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]