| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998844
Identifier: 121998844
GI number: 121998844
Start: 2269167
End: 2270441
Strand: Reverse
Name: 121998844
Synonym: Hhal_2065
Alternate gene names: NA
Gene position: 2270441-2269167 (Counterclockwise)
Preceding gene: 121998845
Following gene: 121998843
Centisome position: 84.77
GC content: 69.73
Gene sequence:
>1275_bases ATGCTGGGACTGTCGGTATCGATGGAAGGATGGGAACGAGAGCCACGCCGAGTGGGCTGGCAGGCCGGTCTGGTCGGGGT CTTGCTGGCGTTGCCGGTGGCGACGGCCGCTTTGGAGTATCGGAGTGGCGGAGTGCTGGAGGACGGCGCCACCGAGCACC GCTTCGGGGTCGAGCGGTTCAGCTGGGCAGAGCCGCCTGGCAACGACGCGGAGTCGCGGGACGACGTTCTGCGTCTGTCG CCGTCAGCCCGCTTCGGGCTTGCCGCGGGTTACGATCTTCGCGTGGGGCTCCCTGTCCAGCAGGAGGATGATCGGCGCGA TCTGCACGGTGTGGAGCTGGAACTCGGCCTGCCGCTGCGTGAGGGTGACGCAGGCCCCGACGTGACCCTGGCGGTCCACG GTCGGTTGCTCCCGGCGGATCCACCCCTCGGCAGTGGCAGCGATGGGCTGGGCGTGGCCGTTCACCTGAGTGACCGACTG GGTGAACGGGGCATCCGGCTGGACGGCTACCTCGGCCTGGAGCGGGGCGACGCGGCCCTGCGCGATGGCCCCGGCTACGA GGCCGTCAACCGCCTGCATTACGCCAATCGCATCGAATACCCCTTAGGCGCAGGCTGGGGCGTCGGTGCCGATGTGCGCA CCGTGATCGGCCTCAGTGGCGAAGAGGTGCAGAACCAATTCGCCTTCGTGATCCGTCCCGGTCTCAGTTATCGACCGACC GCGAACACCACCCTGCGCGCCGCTGCAGGGCGCGAGCTGGCCGACCGTGGCGTCGAGCCGGAGTCCACAGTACAGCTCTC ATTGACCCATCGGCCGCAGGCCCCGGCGCCGCGCCGTGAGCTGCAGGCGCGCCTGGCCGAGCTAGAGGATCGCCACGAGC GGATGACCCAGGAGCAGACGGGGATCGCCCAGCGTCAGGCCCGGCAGGCGGGACGGCTCTCCGAGCACGGCGAGGTGATC GACCTGGTCAAGCGCCGCGCCGGAACCCTGGAGGTCGAGGTAGTGAACCGCTCCGGTGAACGCCAGCACGCCAGTGAGGC AGTGGCCCGCCTGGAGCGCCTTGGGCACCACGTGGTCCGGCGCATGGAGCGTCCGGAGGCATCGATGCGCGACGCCAGCG TCGTCCAGTACCGCGAGGCCTACGAAGAGGCCGCGGTGGAACTCGGTGAGGCACTGCCGGGTGTCCAGGAGGTGTACCGG GCCGATCCGCCGATCGGGCCCGGGGCCGACGTGCGCTTGATTGTTGGCGCCGACTTCGGCAGCGATGGGGAGTAA
Upstream 100 bases:
>100_bases ATCGACGCCGCGGTGAGCCCCGGCGACGTGGATCACGACGGCTCATCGGCCCCGCGGCTCAATAATCTGCCAGGCCGGCC GCTAAGCCGGGAAAGGATGG
Downstream 100 bases:
>100_bases CGCCATGGTGATCCTGCCAAGCGCATCCCGCCGCCTGATGGCTCTGGTTGTGGCCGGGTCGGCCTCGGCTGCCGCGCCCC TGGCGCTGGCGACGCCGGTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 424; Mature: 424
Protein sequence:
>424_residues MLGLSVSMEGWEREPRRVGWQAGLVGVLLALPVATAALEYRSGGVLEDGATEHRFGVERFSWAEPPGNDAESRDDVLRLS PSARFGLAAGYDLRVGLPVQQEDDRRDLHGVELELGLPLREGDAGPDVTLAVHGRLLPADPPLGSGSDGLGVAVHLSDRL GERGIRLDGYLGLERGDAALRDGPGYEAVNRLHYANRIEYPLGAGWGVGADVRTVIGLSGEEVQNQFAFVIRPGLSYRPT ANTTLRAAAGRELADRGVEPESTVQLSLTHRPQAPAPRRELQARLAELEDRHERMTQEQTGIAQRQARQAGRLSEHGEVI DLVKRRAGTLEVEVVNRSGERQHASEAVARLERLGHHVVRRMERPEASMRDASVVQYREAYEEAAVELGEALPGVQEVYR ADPPIGPGADVRLIVGADFGSDGE
Sequences:
>Translated_424_residues MLGLSVSMEGWEREPRRVGWQAGLVGVLLALPVATAALEYRSGGVLEDGATEHRFGVERFSWAEPPGNDAESRDDVLRLS PSARFGLAAGYDLRVGLPVQQEDDRRDLHGVELELGLPLREGDAGPDVTLAVHGRLLPADPPLGSGSDGLGVAVHLSDRL GERGIRLDGYLGLERGDAALRDGPGYEAVNRLHYANRIEYPLGAGWGVGADVRTVIGLSGEEVQNQFAFVIRPGLSYRPT ANTTLRAAAGRELADRGVEPESTVQLSLTHRPQAPAPRRELQARLAELEDRHERMTQEQTGIAQRQARQAGRLSEHGEVI DLVKRRAGTLEVEVVNRSGERQHASEAVARLERLGHHVVRRMERPEASMRDASVVQYREAYEEAAVELGEALPGVQEVYR ADPPIGPGADVRLIVGADFGSDGE >Mature_424_residues MLGLSVSMEGWEREPRRVGWQAGLVGVLLALPVATAALEYRSGGVLEDGATEHRFGVERFSWAEPPGNDAESRDDVLRLS PSARFGLAAGYDLRVGLPVQQEDDRRDLHGVELELGLPLREGDAGPDVTLAVHGRLLPADPPLGSGSDGLGVAVHLSDRL GERGIRLDGYLGLERGDAALRDGPGYEAVNRLHYANRIEYPLGAGWGVGADVRTVIGLSGEEVQNQFAFVIRPGLSYRPT ANTTLRAAAGRELADRGVEPESTVQLSLTHRPQAPAPRRELQARLAELEDRHERMTQEQTGIAQRQARQAGRLSEHGEVI DLVKRRAGTLEVEVVNRSGERQHASEAVARLERLGHHVVRRMERPEASMRDASVVQYREAYEEAAVELGEALPGVQEVYR ADPPIGPGADVRLIVGADFGSDGE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46028; Mature: 46028
Theoretical pI: Translated: 4.96; Mature: 4.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLGLSVSMEGWEREPRRVGWQAGLVGVLLALPVATAALEYRSGGVLEDGATEHRFGVERF CCCCEECCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCHHH SWAEPPGNDAESRDDVLRLSPSARFGLAAGYDLRVGLPVQQEDDRRDLHGVELELGLPLR CCCCCCCCCCCCCCCEEEECCCCCCCEECCCEEEECCCCCCCCCCCCCCCEEEEECCCCC EGDAGPDVTLAVHGRLLPADPPLGSGSDGLGVAVHLSDRLGERGIRLDGYLGLERGDAAL CCCCCCCEEEEEECEEECCCCCCCCCCCCCEEEEEEHHHHCCCCCEECCEECCCCCCCCC RDGPGYEAVNRLHYANRIEYPLGAGWGVGADVRTVIGLSGEEVQNQFAFVIRPGLSYRPT CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCHHHHCCEEEEEECCCCCCCC ANTTLRAAAGRELADRGVEPESTVQLSLTHRPQAPAPRRELQARLAELEDRHERMTQEQT CCCEEHHHCCHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH GIAQRQARQAGRLSEHGEVIDLVKRRAGTLEVEVVNRSGERQHASEAVARLERLGHHVVR HHHHHHHHHHCCCHHCCHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH RMERPEASMRDASVVQYREAYEEAAVELGEALPGVQEVYRADPPIGPGADVRLIVGADFG HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEEEEECCCC SDGE CCCC >Mature Secondary Structure MLGLSVSMEGWEREPRRVGWQAGLVGVLLALPVATAALEYRSGGVLEDGATEHRFGVERF CCCCEECCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCHHH SWAEPPGNDAESRDDVLRLSPSARFGLAAGYDLRVGLPVQQEDDRRDLHGVELELGLPLR CCCCCCCCCCCCCCCEEEECCCCCCCEECCCEEEECCCCCCCCCCCCCCCEEEEECCCCC EGDAGPDVTLAVHGRLLPADPPLGSGSDGLGVAVHLSDRLGERGIRLDGYLGLERGDAAL CCCCCCCEEEEEECEEECCCCCCCCCCCCCEEEEEEHHHHCCCCCEECCEECCCCCCCCC RDGPGYEAVNRLHYANRIEYPLGAGWGVGADVRTVIGLSGEEVQNQFAFVIRPGLSYRPT CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCHHHHCCEEEEEECCCCCCCC ANTTLRAAAGRELADRGVEPESTVQLSLTHRPQAPAPRRELQARLAELEDRHERMTQEQT CCCEEHHHCCHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH GIAQRQARQAGRLSEHGEVIDLVKRRAGTLEVEVVNRSGERQHASEAVARLERLGHHVVR HHHHHHHHHHCCCHHCCHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH RMERPEASMRDASVVQYREAYEEAAVELGEALPGVQEVYRADPPIGPGADVRLIVGADFG HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEEEEECCCC SDGE CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA