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The map label for this gene is yvrB [H]

Identifier: 121998701

GI number: 121998701

Start: 2117299

End: 2118360

Strand: Reverse

Name: yvrB [H]

Synonym: Hhal_1922

Alternate gene names: 121998701

Gene position: 2118360-2117299 (Counterclockwise)

Preceding gene: 121998702

Following gene: 121998700

Centisome position: 79.09

GC content: 74.76

Gene sequence:

>1062_bases
ATGGGGGTTGAGCGCACAGCCGATCAGCGGGCGCGCGCCGGCGCGGTGAGTGAGGAGGGCGGCGCTTTGGCCCAGCCGAG
TCGCATCGGGTCGCCGGTGCGCTTCCTGGTGCCGCTGGCCGTGCTGGCCGGGGCGGCGCTGCTGGCGGTGGCCACTGCGG
TGGCTATCGGCAGCGTGCCGCTGACCCCGGGGGAGGTGCTGGCGGTCTTCACCGGTGGCGGGGAGCCCCTGCACCGCACC
CTGGTCCTCGAGCTGCGCCTCCCCCGTGCACTGGCCGCCTTCGCCGTCGGCGGCCTGCTGGCGGTGGCCGGGGCGCTGAT
GCAGGTGCTGCTGCGCAATCCGCTCGCCGATCCCTATGTGCTGGGGCTCTCCGGCGGTGCCGCCGTGGGGGCCCTGGCGG
CGATGCTCGCCGGCCTGGGGATGGCGCTGGTCTCCGGGGCCGCCTTTGTCGGGGCGCTCTTCTCAACCCTGCTGGTCTTC
GGCCTGGCCCACGGCACCGGCAGCTGGACGCCGACCCGGCTGCTGCTCACCGGGGTGGTGGTGGCCTCCGGCTGGGGGGC
GCTGGTGACCTTCATGCTCGCCGTCGGCCCCACCGAGCAGCTGCCCGGGATGCTCTACTGGCTCATGGGGGATCTGGCCT
ACGCGCGCAGCCCGTGGCTGGCCCTGGCGGCGCTGGCGGTGGCCGTGGCGGTGGCGGTCCCCCTGGGGCGCAGCCTCAAC
GTCCTCGCCCGCGGGCCGCTCCAGGCGGCGGCCCTCGGTGTGGCCGTGAGGCCCCTGGAGTGGGGGGTCTACGTGGCGGC
GAGCGTGCTGACCGCGGTGGCGGTGACCACCGCGGGGAGCATCGGGTTTGTCGGTCTGGTGGTGCCGCACATGCTCCGCC
TGGTACTGGGCAACGACCAGCGGCTGATCCTGCCCGCCGCGGCGTTGGCCGGCGGCGCGCTGTTGGCGCTGGCGGACGTC
TTCGCGCGCACCCTGATCGCCCCGGAGCAGTTGCCGGTGGGCGTGATCACGGCGATGCTCGGCGTCCCGCTGTTCCTCTA
TCTGCTGCACCGGAGTCGGTAG

Upstream 100 bases:

>100_bases
TTTTTGTCGAGCCGTCCACGATCCAGCGCCCGACGCCACGCATCCTGGAGGGGACGCGGGTGCTGTGTGACAAGCTCCAG
CAGGCCCGGCGCAATCGCTG

Downstream 100 bases:

>100_bases
GTCGCGTCATGCTGCAGGCCCAGGATCTGATCATCGATATCCCCGAGCGGACGGACGGCTACCCGCTCAACTTCGCCATC
GAGCCCGGGGAGGTGTGGGG

Product: transport system permease

Products: ADP; phosphate; iron dicitrate [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 353; Mature: 352

Protein sequence:

>353_residues
MGVERTADQRARAGAVSEEGGALAQPSRIGSPVRFLVPLAVLAGAALLAVATAVAIGSVPLTPGEVLAVFTGGGEPLHRT
LVLELRLPRALAAFAVGGLLAVAGALMQVLLRNPLADPYVLGLSGGAAVGALAAMLAGLGMALVSGAAFVGALFSTLLVF
GLAHGTGSWTPTRLLLTGVVVASGWGALVTFMLAVGPTEQLPGMLYWLMGDLAYARSPWLALAALAVAVAVAVPLGRSLN
VLARGPLQAAALGVAVRPLEWGVYVAASVLTAVAVTTAGSIGFVGLVVPHMLRLVLGNDQRLILPAAALAGGALLALADV
FARTLIAPEQLPVGVITAMLGVPLFLYLLHRSR

Sequences:

>Translated_353_residues
MGVERTADQRARAGAVSEEGGALAQPSRIGSPVRFLVPLAVLAGAALLAVATAVAIGSVPLTPGEVLAVFTGGGEPLHRT
LVLELRLPRALAAFAVGGLLAVAGALMQVLLRNPLADPYVLGLSGGAAVGALAAMLAGLGMALVSGAAFVGALFSTLLVF
GLAHGTGSWTPTRLLLTGVVVASGWGALVTFMLAVGPTEQLPGMLYWLMGDLAYARSPWLALAALAVAVAVAVPLGRSLN
VLARGPLQAAALGVAVRPLEWGVYVAASVLTAVAVTTAGSIGFVGLVVPHMLRLVLGNDQRLILPAAALAGGALLALADV
FARTLIAPEQLPVGVITAMLGVPLFLYLLHRSR
>Mature_352_residues
GVERTADQRARAGAVSEEGGALAQPSRIGSPVRFLVPLAVLAGAALLAVATAVAIGSVPLTPGEVLAVFTGGGEPLHRTL
VLELRLPRALAAFAVGGLLAVAGALMQVLLRNPLADPYVLGLSGGAAVGALAAMLAGLGMALVSGAAFVGALFSTLLVFG
LAHGTGSWTPTRLLLTGVVVASGWGALVTFMLAVGPTEQLPGMLYWLMGDLAYARSPWLALAALAVAVAVAVPLGRSLNV
LARGPLQAAALGVAVRPLEWGVYVAASVLTAVAVTTAGSIGFVGLVVPHMLRLVLGNDQRLILPAAALAGGALLALADVF
ARTLIAPEQLPVGVITAMLGVPLFLYLLHRSR

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0609

COG function: function code P; ABC-type Fe3+-siderophore transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790740, Length=318, Percent_Identity=36.1635220125786, Blast_Score=145, Evalue=5e-36,
Organism=Escherichia coli, GI1788004, Length=302, Percent_Identity=40.3973509933775, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1786805, Length=302, Percent_Identity=38.4105960264901, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1790741, Length=298, Percent_Identity=35.5704697986577, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1786347, Length=276, Percent_Identity=34.4202898550725, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1786804, Length=329, Percent_Identity=35.8662613981763, Blast_Score=98, Evalue=7e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000522 [H]

Pfam domain/function: PF01032 FecCD [H]

EC number: NA

Molecular weight: Translated: 35542; Mature: 35411

Theoretical pI: Translated: 10.59; Mature: 10.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVERTADQRARAGAVSEEGGALAQPSRIGSPVRFLVPLAVLAGAALLAVATAVAIGSVP
CCCCCCHHHHHHCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LTPGEVLAVFTGGGEPLHRTLVLELRLPRALAAFAVGGLLAVAGALMQVLLRNPLADPYV
CCCCCEEEEEECCCCHHHHHEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
LGLSGGAAVGALAAMLAGLGMALVSGAAFVGALFSTLLVFGLAHGTGSWTPTRLLLTGVV
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
VASGWGALVTFMLAVGPTEQLPGMLYWLMGDLAYARSPWLALAALAVAVAVAVPLGRSLN
HHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCC
VLARGPLQAAALGVAVRPLEWGVYVAASVLTAVAVTTAGSIGFVGLVVPHMLRLVLGNDQ
HHCCCCHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
RLILPAAALAGGALLALADVFARTLIAPEQLPVGVITAMLGVPLFLYLLHRSR
EEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GVERTADQRARAGAVSEEGGALAQPSRIGSPVRFLVPLAVLAGAALLAVATAVAIGSVP
CCCCCHHHHHHCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LTPGEVLAVFTGGGEPLHRTLVLELRLPRALAAFAVGGLLAVAGALMQVLLRNPLADPYV
CCCCCEEEEEECCCCHHHHHEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
LGLSGGAAVGALAAMLAGLGMALVSGAAFVGALFSTLLVFGLAHGTGSWTPTRLLLTGVV
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
VASGWGALVTFMLAVGPTEQLPGMLYWLMGDLAYARSPWLALAALAVAVAVAVPLGRSLN
HHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCC
VLARGPLQAAALGVAVRPLEWGVYVAASVLTAVAVTTAGSIGFVGLVVPHMLRLVLGNDQ
HHCCCCHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
RLILPAAALAGGALLALADVFARTLIAPEQLPVGVITAMLGVPLFLYLLHRSR
EEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; iron dicitrate [Periplasm]; H2O [C]

Specific reaction: ATP + iron dicitrate [Periplasm] + H2O = ADP + phosphate + iron dicitrate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]