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The map label for this gene is yddV [C]

Identifier: 121998647

GI number: 121998647

Start: 2042371

End: 2043276

Strand: Reverse

Name: yddV [C]

Synonym: Hhal_1868

Alternate gene names: 121998647

Gene position: 2043276-2042371 (Counterclockwise)

Preceding gene: 121998649

Following gene: 121998643

Centisome position: 76.29

GC content: 69.43

Gene sequence:

>906_bases
ATGCTGGGTGGGTTGTTGCTCGCCCTGATCTTCGGCGTGGTCTTCACGGCGGCGGGCACGTACCTCGGTCCCGACGTGCC
TGCCGCGGCGGGGGGGAGCATGTCGCCCACCTTGCTGACCGCCCATCCTTCGCTCGGCCACGTCCCGCAACTGCCTGAGA
CCGGATACCAGCGGAATCTACCCGGATCATCCCCCTATGTCGTTGCCTTCATCTCGGCTGGTACGGCGCTTGGTGTGGCG
GCGTTGTTCGGCCTGTGGCTGCGCCGTCAGCTGGTGGCTCCGTTGCACGAGGCGGCGGTGTCCATCGAGTCCGGGGGGCC
GGTGCGCCTGCGTGGTATTGCCGGAGCCGTGCGTGAGCTGCGGATGGTCGAGGAGCGCTACAACCGCGCCCGGGAAGCCA
TGGAGCAGCGGATCGTGGAGCTCGACCAGCAGCTGCATGTCGATTGGCTGACCGGTCTGACCAATCGGCGCGGTCTGGAG
CGGGCCCTGGAAGTAGAGCTGGAGCGGGCGCGGCGTTCGGCGGCGCCGGTCAGTCTGATCTTCCTCGATCTGGATGGTTT
CAAGGCCCTCAACGACGAGCGTGGCCACCAGGCCGGCGATGAGGCACTGCAGCAGGCGGCCGAGCTGCTCAAGTCCCGGG
TTCGGGAGACGGACGCCGTGGCGCGCTGGGGCGGGGATGAGTTCGTGATCCTCTGCCGCGACACCGACCAGGCGGGCGCC
GAGGTCGTTGCTCGCGCCTTGGCACTGCGTCTGGCCCAGTGCCCAGGGGTGCCCGGGGGGTGTCGGGCGAGTGTCGGGGT
GAGTGCCTGGCGAGCCGGGGATTGTGCCCGGGAGCTCATGGCCCGGGCCGACGGTGCCATGTACGACGCCAAGCGGCGAG
GGGGCGGCAGCATCTGCGTCAGGTGA

Upstream 100 bases:

>100_bases
TTCGGCCAGCTGGGATGCGGGCGGAGGGGCGTCTGTCCCCGGTGTGGAATGGATTTCCGAGGTGGCTCTTTTGCGAGGGA
TCCCGCTGTGTTCGCTGATC

Downstream 100 bases:

>100_bases
GTGCGCTGAACAGATCCTGTTCGCGCTGCTTCGGCTGCAGTCCCGACAGGCTGACGCCGAGCAACCGCACCGGCCGGGAG
CCGGCCTCGGTCTCGGCCAG

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MLGGLLLALIFGVVFTAAGTYLGPDVPAAAGGSMSPTLLTAHPSLGHVPQLPETGYQRNLPGSSPYVVAFISAGTALGVA
ALFGLWLRRQLVAPLHEAAVSIESGGPVRLRGIAGAVRELRMVEERYNRAREAMEQRIVELDQQLHVDWLTGLTNRRGLE
RALEVELERARRSAAPVSLIFLDLDGFKALNDERGHQAGDEALQQAAELLKSRVRETDAVARWGGDEFVILCRDTDQAGA
EVVARALALRLAQCPGVPGGCRASVGVSAWRAGDCARELMARADGAMYDAKRRGGGSICVR

Sequences:

>Translated_301_residues
MLGGLLLALIFGVVFTAAGTYLGPDVPAAAGGSMSPTLLTAHPSLGHVPQLPETGYQRNLPGSSPYVVAFISAGTALGVA
ALFGLWLRRQLVAPLHEAAVSIESGGPVRLRGIAGAVRELRMVEERYNRAREAMEQRIVELDQQLHVDWLTGLTNRRGLE
RALEVELERARRSAAPVSLIFLDLDGFKALNDERGHQAGDEALQQAAELLKSRVRETDAVARWGGDEFVILCRDTDQAGA
EVVARALALRLAQCPGVPGGCRASVGVSAWRAGDCARELMARADGAMYDAKRRGGGSICVR
>Mature_301_residues
MLGGLLLALIFGVVFTAAGTYLGPDVPAAAGGSMSPTLLTAHPSLGHVPQLPETGYQRNLPGSSPYVVAFISAGTALGVA
ALFGLWLRRQLVAPLHEAAVSIESGGPVRLRGIAGAVRELRMVEERYNRAREAMEQRIVELDQQLHVDWLTGLTNRRGLE
RALEVELERARRSAAPVSLIFLDLDGFKALNDERGHQAGDEALQQAAELLKSRVRETDAVARWGGDEFVILCRDTDQAGA
EVVARALALRLAQCPGVPGGCRASVGVSAWRAGDCARELMARADGAMYDAKRRGGGSICVR

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI145693134, Length=157, Percent_Identity=33.1210191082803, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1788381, Length=158, Percent_Identity=36.0759493670886, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87081881, Length=173, Percent_Identity=34.6820809248555, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1786584, Length=153, Percent_Identity=36.6013071895425, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787541, Length=161, Percent_Identity=32.2981366459627, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787262, Length=163, Percent_Identity=29.4478527607362, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI87081974, Length=151, Percent_Identity=33.7748344370861, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1788085, Length=200, Percent_Identity=27, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787816, Length=170, Percent_Identity=33.5294117647059, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI87082007, Length=158, Percent_Identity=35.4430379746835, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87081977, Length=95, Percent_Identity=36.8421052631579, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787802, Length=156, Percent_Identity=28.8461538461538, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 32127; Mature: 32127

Theoretical pI: Translated: 7.46; Mature: 7.46

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGGLLLALIFGVVFTAAGTYLGPDVPAAAGGSMSPTLLTAHPSLGHVPQLPETGYQRNL
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
PGSSPYVVAFISAGTALGVAALFGLWLRRQLVAPLHEAAVSIESGGPVRLRGIAGAVREL
CCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEEHHHHHHHHHH
RMVEERYNRAREAMEQRIVELDQQLHVDWLTGLTNRRGLERALEVELERARRSAAPVSLI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEE
FLDLDGFKALNDERGHQAGDEALQQAAELLKSRVRETDAVARWGGDEFVILCRDTDQAGA
EEECCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHH
EVVARALALRLAQCPGVPGGCRASVGVSAWRAGDCARELMARADGAMYDAKRRGGGSICV
HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCC
R
C
>Mature Secondary Structure
MLGGLLLALIFGVVFTAAGTYLGPDVPAAAGGSMSPTLLTAHPSLGHVPQLPETGYQRNL
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
PGSSPYVVAFISAGTALGVAALFGLWLRRQLVAPLHEAAVSIESGGPVRLRGIAGAVREL
CCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEEHHHHHHHHHH
RMVEERYNRAREAMEQRIVELDQQLHVDWLTGLTNRRGLERALEVELERARRSAAPVSLI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEE
FLDLDGFKALNDERGHQAGDEALQQAAELLKSRVRETDAVARWGGDEFVILCRDTDQAGA
EEECCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHH
EVVARALALRLAQCPGVPGGCRASVGVSAWRAGDCARELMARADGAMYDAKRRGGGSICV
HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCC
R
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]