Definition Halorhodospira halophila SL1 chromosome, complete genome.
Accession NC_008789
Length 2,678,452

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The map label for this gene is 121998516

Identifier: 121998516

GI number: 121998516

Start: 1903828

End: 1905540

Strand: Reverse

Name: 121998516

Synonym: Hhal_1737

Alternate gene names: NA

Gene position: 1905540-1903828 (Counterclockwise)

Preceding gene: 121998517

Following gene: 121998515

Centisome position: 71.14

GC content: 70.46

Gene sequence:

>1713_bases
GTGATCGCATCGGTATCCAGAGTCCTGGTGTTGGCCGCCTGGGGGGCCGTGCTGGTACTGGCGGGGGGCGCGGCGGTCGC
TTCCAAACCGTGCGCCTCAGCGGAGACCACCGCGGTCCATGAACTGGCCGGGCAGGGTGTGGGGCGCCAGGCCCCGGAGG
ATCCGGTCCGGGTGAACGGGGTGGTCACCGCCGCCTTCCTCGGAGCGGAGGGGCTGGATGGCTTCTTCATCCAGGGTACC
GGGCCGGCGCCGGATGGCAAGCCCGCCGGGCTGTTCGTCTACGCCCCGGAGCTGACCGCCGAGCAGCGCGAGCGGATCGA
GCCTGGTCGTCAGCTCCTGCTCACCGGGCGCGCCGGTGAGCACCGGGGGCGACCGCAGCTCGAGTGGCTGGAGGCCGTTC
AGGACTGCGGTGCCAAGCAGGTCACCCCGTATCCGCTGGACTGGCCGGCGGCCGCCCCCGAGCGCCTGGAGGGCGTGCTG
GTGCGTATCCGGCAGCCGATGGTGGTCAGCGGTACCTACGAGCTGCCGCGCTACGGCACCCTGAAGCTCACCCCAGAGCG
GCGCGCCTTTCGGCCGACCAATTTTCTGCCGGGCGACGGCCCCGAGGATCCGACCCTGTCTGGAGCCCGGCTGCGGCTGG
ATGATGGCAGCTACCGGGGGCGGCCCGATCCCATTCCCTACCTCGACGACGACGGAACCCGTCGGGTGGGGAGCCGCGTG
GCGGACCTGACCGGCGTGCTGACCCACGCCTTCGGCGCCTGGCGGCTGCACCCGACCGAGCCGCCGGATTTCGAAGCCTC
CAACCCGCGGCCGGAAGCGTTGCCGCCACCGGAGGCGGGGACGGTGCGCGTGGCCGCCTTCAACGTTGAGAACTACTTCC
TGACCCTCGGCGAGCGAGGTGCGGCCAGCGAGGTGGAACTGGAGCGCCAGCGGGCCAAGCTGCTCGCTGCTGCCGAGTCC
CTGCACGCTGACGTGCTGGTATTGGTCGAGATGGAGAATCGCCAGGACGCCCCGGAAGACTTTGTGGAGCGCCTAGCGGC
GAGCACCGGCCACCCCTGGCGGTTGGCCCGCGGGGGTGAAACCGGGAGCGACGCCATCAAGGTCTCTCTGGCCTACCGCG
AGGACCGCGTGCAGCCGGTGACCGAGACGGTGCGCGATGCCCGGCGGGTCCATCATCGTCCGCCGCCGCTGGTCGGTTTT
CGTCCGCAGGGTGGCGGGGAGCCTTTCGCTGTGGCCGGGATCCACTTCAAGTCGAAGACGCGGTGTCCGGATGCCGGGGA
TGTCGATCGTGGCCAGGGGTGCTGGAACCACCGTCGCACCGAACAGGCCGAGGCCCTGGCCGAGTTCCTCGGCCGCTGGC
GTGCGGAGCGCAGCGAGGCGTTACCGGTGCTCATCGCCGGTGATCTCAACGCCTACGGTGGCGAGGATCCGGCCCGCGCC
CTCGCCGCAGCGGGCAAGGTGGATCTGCTCGCCGAACACCTCGCCTGGCCCGACCGGTATACCTACGTCTTTCGGGGCGA
GTCGGGCTATCTCGATCACCTTCAGGCCCACCCGGCGCTGGCGGAGCGGGTGGCCGCGGTCCACCGGCACCCCATCAATG
CCGACGAGCCCCGTTTCCTGGAGTTCGACGGTGATCCCGGTCGCGTTCGGGAGGATGCCTATCGCTCTTCGGACCACGAT
CCCATTGCCGTGGACCTGGAAAAGACGGACTAG

Upstream 100 bases:

>100_bases
TATACCACGCCGGTCAACGTGGTCGGAGCCGAATTGGAGCGCCTGGAGCACGCCTCGGGTCCGCCTCGAGGCAGGGTCTG
AACTCAGGGAGGAGTCTGCC

Downstream 100 bases:

>100_bases
CCGCTCGGGTGCCGTCCCGGCCCTGTGACACCGATCGTGCACCGGGCACGTGATCACCGGCGGGGTTTCCCTGTATCTTG
TCGTGATGGACCGCGAAGAG

Product: endonuclease/exonuclease/phosphatase

Products: NA

Alternate protein names: Extracellular Nuclease; Nuclease; 5-Nucleotidase Domain Protein; Endonuclease/Exonuclease/Phosphatase Family Protein; 5-Nucleotidase Domain-Containing Protein; Extracellular Ribonuclease/Nuclease Fusion Protein; Extracellular Nuclease-Like Protein; 5-Nucleotidase; PKD Domain-Containing Protein; Exported Nuclease; Outer Membrane Adhesin Like Proteiin; LPXTG-Motif Cell Wall Anchor Domain Protein; Endonuclease/Exonuclease/Phosphatase Family; Calcineurin-Like Phosphoesterase; Endonuclease I; Extracellular Nuclease-Like; Glutamate-Cysteine Ligase/Putative Amino Acid Ligase; Extracellular Nuclease/Phosphatase; 5-Nucleotidase Family Protein

Number of amino acids: Translated: 570; Mature: 570

Protein sequence:

>570_residues
MIASVSRVLVLAAWGAVLVLAGGAAVASKPCASAETTAVHELAGQGVGRQAPEDPVRVNGVVTAAFLGAEGLDGFFIQGT
GPAPDGKPAGLFVYAPELTAEQRERIEPGRQLLLTGRAGEHRGRPQLEWLEAVQDCGAKQVTPYPLDWPAAAPERLEGVL
VRIRQPMVVSGTYELPRYGTLKLTPERRAFRPTNFLPGDGPEDPTLSGARLRLDDGSYRGRPDPIPYLDDDGTRRVGSRV
ADLTGVLTHAFGAWRLHPTEPPDFEASNPRPEALPPPEAGTVRVAAFNVENYFLTLGERGAASEVELERQRAKLLAAAES
LHADVLVLVEMENRQDAPEDFVERLAASTGHPWRLARGGETGSDAIKVSLAYREDRVQPVTETVRDARRVHHRPPPLVGF
RPQGGGEPFAVAGIHFKSKTRCPDAGDVDRGQGCWNHRRTEQAEALAEFLGRWRAERSEALPVLIAGDLNAYGGEDPARA
LAAAGKVDLLAEHLAWPDRYTYVFRGESGYLDHLQAHPALAERVAAVHRHPINADEPRFLEFDGDPGRVREDAYRSSDHD
PIAVDLEKTD

Sequences:

>Translated_570_residues
MIASVSRVLVLAAWGAVLVLAGGAAVASKPCASAETTAVHELAGQGVGRQAPEDPVRVNGVVTAAFLGAEGLDGFFIQGT
GPAPDGKPAGLFVYAPELTAEQRERIEPGRQLLLTGRAGEHRGRPQLEWLEAVQDCGAKQVTPYPLDWPAAAPERLEGVL
VRIRQPMVVSGTYELPRYGTLKLTPERRAFRPTNFLPGDGPEDPTLSGARLRLDDGSYRGRPDPIPYLDDDGTRRVGSRV
ADLTGVLTHAFGAWRLHPTEPPDFEASNPRPEALPPPEAGTVRVAAFNVENYFLTLGERGAASEVELERQRAKLLAAAES
LHADVLVLVEMENRQDAPEDFVERLAASTGHPWRLARGGETGSDAIKVSLAYREDRVQPVTETVRDARRVHHRPPPLVGF
RPQGGGEPFAVAGIHFKSKTRCPDAGDVDRGQGCWNHRRTEQAEALAEFLGRWRAERSEALPVLIAGDLNAYGGEDPARA
LAAAGKVDLLAEHLAWPDRYTYVFRGESGYLDHLQAHPALAERVAAVHRHPINADEPRFLEFDGDPGRVREDAYRSSDHD
PIAVDLEKTD
>Mature_570_residues
MIASVSRVLVLAAWGAVLVLAGGAAVASKPCASAETTAVHELAGQGVGRQAPEDPVRVNGVVTAAFLGAEGLDGFFIQGT
GPAPDGKPAGLFVYAPELTAEQRERIEPGRQLLLTGRAGEHRGRPQLEWLEAVQDCGAKQVTPYPLDWPAAAPERLEGVL
VRIRQPMVVSGTYELPRYGTLKLTPERRAFRPTNFLPGDGPEDPTLSGARLRLDDGSYRGRPDPIPYLDDDGTRRVGSRV
ADLTGVLTHAFGAWRLHPTEPPDFEASNPRPEALPPPEAGTVRVAAFNVENYFLTLGERGAASEVELERQRAKLLAAAES
LHADVLVLVEMENRQDAPEDFVERLAASTGHPWRLARGGETGSDAIKVSLAYREDRVQPVTETVRDARRVHHRPPPLVGF
RPQGGGEPFAVAGIHFKSKTRCPDAGDVDRGQGCWNHRRTEQAEALAEFLGRWRAERSEALPVLIAGDLNAYGGEDPARA
LAAAGKVDLLAEHLAWPDRYTYVFRGESGYLDHLQAHPALAERVAAVHRHPINADEPRFLEFDGDPGRVREDAYRSSDHD
PIAVDLEKTD

Specific function: Unknown

COG id: COG2374

COG function: function code R; Predicted extracellular nuclease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 61941; Mature: 61941

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIASVSRVLVLAAWGAVLVLAGGAAVASKPCASAETTAVHELAGQGVGRQAPEDPVRVNG
CCCCHHHHHHHHHHHHHHEEECCHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEECE
VVTAAFLGAEGLDGFFIQGTGPAPDGKPAGLFVYAPELTAEQRERIEPGRQLLLTGRAGE
EEEEEEECCCCCCCEEEECCCCCCCCCCCEEEEECCCCCHHHHHHCCCCCEEEEECCCCC
HRGRPQLEWLEAVQDCGAKQVTPYPLDWPAAAPERLEGVLVRIRQPMVVSGTYELPRYGT
CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCE
LKLTPERRAFRPTNFLPGDGPEDPTLSGARLRLDDGSYRGRPDPIPYLDDDGTRRVGSRV
EEECCCHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHH
ADLTGVLTHAFGAWRLHPTEPPDFEASNPRPEALPPPEAGTVRVAAFNVENYFLTLGERG
HHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECEEEEEECCCC
AASEVELERQRAKLLAAAESLHADVLVLVEMENRQDAPEDFVERLAASTGHPWRLARGGE
CCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCEEEECCCC
TGSDAIKVSLAYREDRVQPVTETVRDARRVHHRPPPLVGFRPQGGGEPFAVAGIHFKSKT
CCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEEECCCC
RCPDAGDVDRGQGCWNHRRTEQAEALAEFLGRWRAERSEALPVLIAGDLNAYGGEDPARA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHH
LAAAGKVDLLAEHLAWPDRYTYVFRGESGYLDHLQAHPALAERVAAVHRHPINADEPRFL
HHHCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHCCHHHHHHHHHHHCCCCCCCCCCEE
EFDGDPGRVREDAYRSSDHDPIAVDLEKTD
EECCCCCCHHHHHHCCCCCCCEEEEEECCC
>Mature Secondary Structure
MIASVSRVLVLAAWGAVLVLAGGAAVASKPCASAETTAVHELAGQGVGRQAPEDPVRVNG
CCCCHHHHHHHHHHHHHHEEECCHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEECE
VVTAAFLGAEGLDGFFIQGTGPAPDGKPAGLFVYAPELTAEQRERIEPGRQLLLTGRAGE
EEEEEEECCCCCCCEEEECCCCCCCCCCCEEEEECCCCCHHHHHHCCCCCEEEEECCCCC
HRGRPQLEWLEAVQDCGAKQVTPYPLDWPAAAPERLEGVLVRIRQPMVVSGTYELPRYGT
CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCE
LKLTPERRAFRPTNFLPGDGPEDPTLSGARLRLDDGSYRGRPDPIPYLDDDGTRRVGSRV
EEECCCHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHH
ADLTGVLTHAFGAWRLHPTEPPDFEASNPRPEALPPPEAGTVRVAAFNVENYFLTLGERG
HHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECEEEEEECCCC
AASEVELERQRAKLLAAAESLHADVLVLVEMENRQDAPEDFVERLAASTGHPWRLARGGE
CCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCEEEECCCC
TGSDAIKVSLAYREDRVQPVTETVRDARRVHHRPPPLVGFRPQGGGEPFAVAGIHFKSKT
CCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEEECCCC
RCPDAGDVDRGQGCWNHRRTEQAEALAEFLGRWRAERSEALPVLIAGDLNAYGGEDPARA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHH
LAAAGKVDLLAEHLAWPDRYTYVFRGESGYLDHLQAHPALAERVAAVHRHPINADEPRFL
HHHCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHCCHHHHHHHHHHHCCCCCCCCCCEE
EFDGDPGRVREDAYRSSDHDPIAVDLEKTD
EECCCCCCHHHHHHCCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA