| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998516
Identifier: 121998516
GI number: 121998516
Start: 1903828
End: 1905540
Strand: Reverse
Name: 121998516
Synonym: Hhal_1737
Alternate gene names: NA
Gene position: 1905540-1903828 (Counterclockwise)
Preceding gene: 121998517
Following gene: 121998515
Centisome position: 71.14
GC content: 70.46
Gene sequence:
>1713_bases GTGATCGCATCGGTATCCAGAGTCCTGGTGTTGGCCGCCTGGGGGGCCGTGCTGGTACTGGCGGGGGGCGCGGCGGTCGC TTCCAAACCGTGCGCCTCAGCGGAGACCACCGCGGTCCATGAACTGGCCGGGCAGGGTGTGGGGCGCCAGGCCCCGGAGG ATCCGGTCCGGGTGAACGGGGTGGTCACCGCCGCCTTCCTCGGAGCGGAGGGGCTGGATGGCTTCTTCATCCAGGGTACC GGGCCGGCGCCGGATGGCAAGCCCGCCGGGCTGTTCGTCTACGCCCCGGAGCTGACCGCCGAGCAGCGCGAGCGGATCGA GCCTGGTCGTCAGCTCCTGCTCACCGGGCGCGCCGGTGAGCACCGGGGGCGACCGCAGCTCGAGTGGCTGGAGGCCGTTC AGGACTGCGGTGCCAAGCAGGTCACCCCGTATCCGCTGGACTGGCCGGCGGCCGCCCCCGAGCGCCTGGAGGGCGTGCTG GTGCGTATCCGGCAGCCGATGGTGGTCAGCGGTACCTACGAGCTGCCGCGCTACGGCACCCTGAAGCTCACCCCAGAGCG GCGCGCCTTTCGGCCGACCAATTTTCTGCCGGGCGACGGCCCCGAGGATCCGACCCTGTCTGGAGCCCGGCTGCGGCTGG ATGATGGCAGCTACCGGGGGCGGCCCGATCCCATTCCCTACCTCGACGACGACGGAACCCGTCGGGTGGGGAGCCGCGTG GCGGACCTGACCGGCGTGCTGACCCACGCCTTCGGCGCCTGGCGGCTGCACCCGACCGAGCCGCCGGATTTCGAAGCCTC CAACCCGCGGCCGGAAGCGTTGCCGCCACCGGAGGCGGGGACGGTGCGCGTGGCCGCCTTCAACGTTGAGAACTACTTCC TGACCCTCGGCGAGCGAGGTGCGGCCAGCGAGGTGGAACTGGAGCGCCAGCGGGCCAAGCTGCTCGCTGCTGCCGAGTCC CTGCACGCTGACGTGCTGGTATTGGTCGAGATGGAGAATCGCCAGGACGCCCCGGAAGACTTTGTGGAGCGCCTAGCGGC GAGCACCGGCCACCCCTGGCGGTTGGCCCGCGGGGGTGAAACCGGGAGCGACGCCATCAAGGTCTCTCTGGCCTACCGCG AGGACCGCGTGCAGCCGGTGACCGAGACGGTGCGCGATGCCCGGCGGGTCCATCATCGTCCGCCGCCGCTGGTCGGTTTT CGTCCGCAGGGTGGCGGGGAGCCTTTCGCTGTGGCCGGGATCCACTTCAAGTCGAAGACGCGGTGTCCGGATGCCGGGGA TGTCGATCGTGGCCAGGGGTGCTGGAACCACCGTCGCACCGAACAGGCCGAGGCCCTGGCCGAGTTCCTCGGCCGCTGGC GTGCGGAGCGCAGCGAGGCGTTACCGGTGCTCATCGCCGGTGATCTCAACGCCTACGGTGGCGAGGATCCGGCCCGCGCC CTCGCCGCAGCGGGCAAGGTGGATCTGCTCGCCGAACACCTCGCCTGGCCCGACCGGTATACCTACGTCTTTCGGGGCGA GTCGGGCTATCTCGATCACCTTCAGGCCCACCCGGCGCTGGCGGAGCGGGTGGCCGCGGTCCACCGGCACCCCATCAATG CCGACGAGCCCCGTTTCCTGGAGTTCGACGGTGATCCCGGTCGCGTTCGGGAGGATGCCTATCGCTCTTCGGACCACGAT CCCATTGCCGTGGACCTGGAAAAGACGGACTAG
Upstream 100 bases:
>100_bases TATACCACGCCGGTCAACGTGGTCGGAGCCGAATTGGAGCGCCTGGAGCACGCCTCGGGTCCGCCTCGAGGCAGGGTCTG AACTCAGGGAGGAGTCTGCC
Downstream 100 bases:
>100_bases CCGCTCGGGTGCCGTCCCGGCCCTGTGACACCGATCGTGCACCGGGCACGTGATCACCGGCGGGGTTTCCCTGTATCTTG TCGTGATGGACCGCGAAGAG
Product: endonuclease/exonuclease/phosphatase
Products: NA
Alternate protein names: Extracellular Nuclease; Nuclease; 5-Nucleotidase Domain Protein; Endonuclease/Exonuclease/Phosphatase Family Protein; 5-Nucleotidase Domain-Containing Protein; Extracellular Ribonuclease/Nuclease Fusion Protein; Extracellular Nuclease-Like Protein; 5-Nucleotidase; PKD Domain-Containing Protein; Exported Nuclease; Outer Membrane Adhesin Like Proteiin; LPXTG-Motif Cell Wall Anchor Domain Protein; Endonuclease/Exonuclease/Phosphatase Family; Calcineurin-Like Phosphoesterase; Endonuclease I; Extracellular Nuclease-Like; Glutamate-Cysteine Ligase/Putative Amino Acid Ligase; Extracellular Nuclease/Phosphatase; 5-Nucleotidase Family Protein
Number of amino acids: Translated: 570; Mature: 570
Protein sequence:
>570_residues MIASVSRVLVLAAWGAVLVLAGGAAVASKPCASAETTAVHELAGQGVGRQAPEDPVRVNGVVTAAFLGAEGLDGFFIQGT GPAPDGKPAGLFVYAPELTAEQRERIEPGRQLLLTGRAGEHRGRPQLEWLEAVQDCGAKQVTPYPLDWPAAAPERLEGVL VRIRQPMVVSGTYELPRYGTLKLTPERRAFRPTNFLPGDGPEDPTLSGARLRLDDGSYRGRPDPIPYLDDDGTRRVGSRV ADLTGVLTHAFGAWRLHPTEPPDFEASNPRPEALPPPEAGTVRVAAFNVENYFLTLGERGAASEVELERQRAKLLAAAES LHADVLVLVEMENRQDAPEDFVERLAASTGHPWRLARGGETGSDAIKVSLAYREDRVQPVTETVRDARRVHHRPPPLVGF RPQGGGEPFAVAGIHFKSKTRCPDAGDVDRGQGCWNHRRTEQAEALAEFLGRWRAERSEALPVLIAGDLNAYGGEDPARA LAAAGKVDLLAEHLAWPDRYTYVFRGESGYLDHLQAHPALAERVAAVHRHPINADEPRFLEFDGDPGRVREDAYRSSDHD PIAVDLEKTD
Sequences:
>Translated_570_residues MIASVSRVLVLAAWGAVLVLAGGAAVASKPCASAETTAVHELAGQGVGRQAPEDPVRVNGVVTAAFLGAEGLDGFFIQGT GPAPDGKPAGLFVYAPELTAEQRERIEPGRQLLLTGRAGEHRGRPQLEWLEAVQDCGAKQVTPYPLDWPAAAPERLEGVL VRIRQPMVVSGTYELPRYGTLKLTPERRAFRPTNFLPGDGPEDPTLSGARLRLDDGSYRGRPDPIPYLDDDGTRRVGSRV ADLTGVLTHAFGAWRLHPTEPPDFEASNPRPEALPPPEAGTVRVAAFNVENYFLTLGERGAASEVELERQRAKLLAAAES LHADVLVLVEMENRQDAPEDFVERLAASTGHPWRLARGGETGSDAIKVSLAYREDRVQPVTETVRDARRVHHRPPPLVGF RPQGGGEPFAVAGIHFKSKTRCPDAGDVDRGQGCWNHRRTEQAEALAEFLGRWRAERSEALPVLIAGDLNAYGGEDPARA LAAAGKVDLLAEHLAWPDRYTYVFRGESGYLDHLQAHPALAERVAAVHRHPINADEPRFLEFDGDPGRVREDAYRSSDHD PIAVDLEKTD >Mature_570_residues MIASVSRVLVLAAWGAVLVLAGGAAVASKPCASAETTAVHELAGQGVGRQAPEDPVRVNGVVTAAFLGAEGLDGFFIQGT GPAPDGKPAGLFVYAPELTAEQRERIEPGRQLLLTGRAGEHRGRPQLEWLEAVQDCGAKQVTPYPLDWPAAAPERLEGVL VRIRQPMVVSGTYELPRYGTLKLTPERRAFRPTNFLPGDGPEDPTLSGARLRLDDGSYRGRPDPIPYLDDDGTRRVGSRV ADLTGVLTHAFGAWRLHPTEPPDFEASNPRPEALPPPEAGTVRVAAFNVENYFLTLGERGAASEVELERQRAKLLAAAES LHADVLVLVEMENRQDAPEDFVERLAASTGHPWRLARGGETGSDAIKVSLAYREDRVQPVTETVRDARRVHHRPPPLVGF RPQGGGEPFAVAGIHFKSKTRCPDAGDVDRGQGCWNHRRTEQAEALAEFLGRWRAERSEALPVLIAGDLNAYGGEDPARA LAAAGKVDLLAEHLAWPDRYTYVFRGESGYLDHLQAHPALAERVAAVHRHPINADEPRFLEFDGDPGRVREDAYRSSDHD PIAVDLEKTD
Specific function: Unknown
COG id: COG2374
COG function: function code R; Predicted extracellular nuclease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 61941; Mature: 61941
Theoretical pI: Translated: 5.42; Mature: 5.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIASVSRVLVLAAWGAVLVLAGGAAVASKPCASAETTAVHELAGQGVGRQAPEDPVRVNG CCCCHHHHHHHHHHHHHHEEECCHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEECE VVTAAFLGAEGLDGFFIQGTGPAPDGKPAGLFVYAPELTAEQRERIEPGRQLLLTGRAGE EEEEEEECCCCCCCEEEECCCCCCCCCCCEEEEECCCCCHHHHHHCCCCCEEEEECCCCC HRGRPQLEWLEAVQDCGAKQVTPYPLDWPAAAPERLEGVLVRIRQPMVVSGTYELPRYGT CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCE LKLTPERRAFRPTNFLPGDGPEDPTLSGARLRLDDGSYRGRPDPIPYLDDDGTRRVGSRV EEECCCHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHH ADLTGVLTHAFGAWRLHPTEPPDFEASNPRPEALPPPEAGTVRVAAFNVENYFLTLGERG HHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECEEEEEECCCC AASEVELERQRAKLLAAAESLHADVLVLVEMENRQDAPEDFVERLAASTGHPWRLARGGE CCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCEEEECCCC TGSDAIKVSLAYREDRVQPVTETVRDARRVHHRPPPLVGFRPQGGGEPFAVAGIHFKSKT CCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEEECCCC RCPDAGDVDRGQGCWNHRRTEQAEALAEFLGRWRAERSEALPVLIAGDLNAYGGEDPARA CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHH LAAAGKVDLLAEHLAWPDRYTYVFRGESGYLDHLQAHPALAERVAAVHRHPINADEPRFL HHHCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHCCHHHHHHHHHHHCCCCCCCCCCEE EFDGDPGRVREDAYRSSDHDPIAVDLEKTD EECCCCCCHHHHHHCCCCCCCEEEEEECCC >Mature Secondary Structure MIASVSRVLVLAAWGAVLVLAGGAAVASKPCASAETTAVHELAGQGVGRQAPEDPVRVNG CCCCHHHHHHHHHHHHHHEEECCHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEECE VVTAAFLGAEGLDGFFIQGTGPAPDGKPAGLFVYAPELTAEQRERIEPGRQLLLTGRAGE EEEEEEECCCCCCCEEEECCCCCCCCCCCEEEEECCCCCHHHHHHCCCCCEEEEECCCCC HRGRPQLEWLEAVQDCGAKQVTPYPLDWPAAAPERLEGVLVRIRQPMVVSGTYELPRYGT CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCE LKLTPERRAFRPTNFLPGDGPEDPTLSGARLRLDDGSYRGRPDPIPYLDDDGTRRVGSRV EEECCCHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHH ADLTGVLTHAFGAWRLHPTEPPDFEASNPRPEALPPPEAGTVRVAAFNVENYFLTLGERG HHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECEEEEEECCCC AASEVELERQRAKLLAAAESLHADVLVLVEMENRQDAPEDFVERLAASTGHPWRLARGGE CCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCEEEECCCC TGSDAIKVSLAYREDRVQPVTETVRDARRVHHRPPPLVGFRPQGGGEPFAVAGIHFKSKT CCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEEECCCC RCPDAGDVDRGQGCWNHRRTEQAEALAEFLGRWRAERSEALPVLIAGDLNAYGGEDPARA CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHH LAAAGKVDLLAEHLAWPDRYTYVFRGESGYLDHLQAHPALAERVAAVHRHPINADEPRFL HHHCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHCCHHHHHHHHHHHCCCCCCCCCCEE EFDGDPGRVREDAYRSSDHDPIAVDLEKTD EECCCCCCHHHHHHCCCCCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA