| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
Click here to switch to the map view.
The map label for this gene is 121998409
Identifier: 121998409
GI number: 121998409
Start: 1777860
End: 1778498
Strand: Reverse
Name: 121998409
Synonym: Hhal_1630
Alternate gene names: NA
Gene position: 1778498-1777860 (Counterclockwise)
Preceding gene: 121998410
Following gene: 121998408
Centisome position: 66.4
GC content: 66.51
Gene sequence:
>639_bases TTGAGGACGCACGAGTTCGAACCCATCCCGGGGCTCCCTGAGGAGCTCCCGGATGGGGAAGAGATCCTGTGGCAGGGTAA GCCCGCTTGGTGGACGCTCGCCAAGCGGGCGCTTCACGTCCGCAAGGTCGGCGCTTATTTCGTCATCGTTGGCGCCTGGT TCGCTACCGATGCCCTAATCCAGGGGGAAGGGGTGCTGGCCGCGGGCGGCTACGCCGTGAACCAACTACTGATCGGTGCG GTGGCGGTAGGGCTGCTGATGGCGCTGGCCCGATGGATGGCTACCACCACACTCTACTCGATCACCAATCGCCGAGTGGT CATGCGCATCGGAGCGTCGCTGCCGACGACGGTCAACCTGCCCTTTGACCGGATCGAGGCGGCGAATCTCGCCAGGCACC GGGATGGCACCAGTGACGTCTCTGTGCGGCTTGAAGAGGGCGAGAAGGTCCGTTTTCTGCTATTTTGGCCCCACGTTCGG CCCTGGCGGCTGAGCCCCCCCGAGCCGACGCTCCGGGTTGTACCGGATGGCGACGAGGCGGCGCGGATCCTGGCCGAGGC GCTGGAGGCCCACCGGGCACGGGAGAAGGGCACGCAGACCGCTTCCGGGGTTGATCAGGAAGCCGCCGCGCACTCCTGA
Upstream 100 bases:
>100_bases GCGAGTCGGATCGCATCTCGCCGCAGGAAGAGGACTTCATCACCGGTTACTACGGTGGCGGTGTCCTGTACGCGGTGCCT GGCCGCACGGAGCCGTTCCT
Downstream 100 bases:
>100_bases GCGTGGCGGCGTTGACCTATGCCGGAGAGACGATCTGACCATGGCATCTTCCGAAAAAGACGAGCATCTCAAGGCGGGAC CGATCTCCAAGGTCATCATG
Product: hypothetical protein
Products: NA
Alternate protein names: ORF214; Protein F3981 [H]
Number of amino acids: Translated: 212; Mature: 212
Protein sequence:
>212_residues MRTHEFEPIPGLPEELPDGEEILWQGKPAWWTLAKRALHVRKVGAYFVIVGAWFATDALIQGEGVLAAGGYAVNQLLIGA VAVGLLMALARWMATTTLYSITNRRVVMRIGASLPTTVNLPFDRIEAANLARHRDGTSDVSVRLEEGEKVRFLLFWPHVR PWRLSPPEPTLRVVPDGDEAARILAEALEAHRAREKGTQTASGVDQEAAAHS
Sequences:
>Translated_212_residues MRTHEFEPIPGLPEELPDGEEILWQGKPAWWTLAKRALHVRKVGAYFVIVGAWFATDALIQGEGVLAAGGYAVNQLLIGA VAVGLLMALARWMATTTLYSITNRRVVMRIGASLPTTVNLPFDRIEAANLARHRDGTSDVSVRLEEGEKVRFLLFWPHVR PWRLSPPEPTLRVVPDGDEAARILAEALEAHRAREKGTQTASGVDQEAAAHS >Mature_212_residues MRTHEFEPIPGLPEELPDGEEILWQGKPAWWTLAKRALHVRKVGAYFVIVGAWFATDALIQGEGVLAAGGYAVNQLLIGA VAVGLLMALARWMATTTLYSITNRRVVMRIGASLPTTVNLPFDRIEAANLARHRDGTSDVSVRLEEGEKVRFLLFWPHVR PWRLSPPEPTLRVVPDGDEAARILAEALEAHRAREKGTQTASGVDQEAAAHS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23330; Mature: 23330
Theoretical pI: Translated: 6.81; Mature: 6.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTHEFEPIPGLPEELPDGEEILWQGKPAWWTLAKRALHVRKVGAYFVIVGAWFATDALI CCCCCCCCCCCCHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHCEEEEEEEHHHHHHHEE QGEGVLAAGGYAVNQLLIGAVAVGLLMALARWMATTTLYSITNRRVVMRIGASLPTTVNL CCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEECC PFDRIEAANLARHRDGTSDVSVRLEEGEKVRFLLFWPHVRPWRLSPPEPTLRVVPDGDEA CHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCEEEECCCHHH ARILAEALEAHRAREKGTQTASGVDQEAAAHS HHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCC >Mature Secondary Structure MRTHEFEPIPGLPEELPDGEEILWQGKPAWWTLAKRALHVRKVGAYFVIVGAWFATDALI CCCCCCCCCCCCHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHCEEEEEEEHHHHHHHEE QGEGVLAAGGYAVNQLLIGAVAVGLLMALARWMATTTLYSITNRRVVMRIGASLPTTVNL CCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEECC PFDRIEAANLARHRDGTSDVSVRLEEGEKVRFLLFWPHVRPWRLSPPEPTLRVVPDGDEA CHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCEEEECCCHHH ARILAEALEAHRAREKGTQTASGVDQEAAAHS HHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 6744416 [H]