| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998355
Identifier: 121998355
GI number: 121998355
Start: 1716842
End: 1717381
Strand: Reverse
Name: 121998355
Synonym: Hhal_1576
Alternate gene names: NA
Gene position: 1717381-1716842 (Counterclockwise)
Preceding gene: 121998356
Following gene: 121998354
Centisome position: 64.12
GC content: 67.41
Gene sequence:
>540_bases ATGGGCAACCGCTGCGCTTTGGTGACCGCGCTGACATTGCTCGGGGGGCTCGTGCCCGGGATGGCGCTGGCCCTGACCCC CGAGCGAGTCGAGCAGTGGCAGGAGGCCGTCGGCGCCCTGCATGACCACGCGGCGGAGCAGGGCATGGAAGATTGGCACC CGGCGAGTGAGCTGCGCGGTGTGGGCAAGAGCGAGACGGCTTTCCGAGAGGCAGCCAAGACGCTGGAAGATCCGGCGTCA GCGCTCGAACTATACGGCTATGAAGGGGCTGCGGCCTGGGCGGAAGAGGGCGCGCGGATCTACCGCGCGCTGATCGCTTT GGAGGCCGGCGACCCGCGGGAATTACAAGCCCAGTTGGAGGGGGCCATCGAGCAGATCGAGGAGAATCCGCATCTCGGCG ATGCCGCCAAGGGCGAAATCATTGCCGACATCAAGGCGCAGCGGGAGCGGGTGACGGACTTCCTCGCTTCGGTGCCCGAT GCCGATCGAGAAGCCGTGGCGACCCGGCAGGAGCGGCTGATGGAACTGCTCCGGCCTTGA
Upstream 100 bases:
>100_bases CGGGATGCGCTAAATCCATTGGCCCACACATGCTCCCGAGCGGCAGGCTGCGTAGGCTGATACCCTCCGGCCGAAACATG CAAATGACTGGAGTTTGCCT
Downstream 100 bases:
>100_bases TCGACCCCTGCGGCGGGGTATCGATCGGCGCGCCGCCGCCTTCAACGAACCAGCAGGTCAGAGCGCATGAGAAAGCTTGT CATCACGGTGCTGCTTCTCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 179; Mature: 178
Protein sequence:
>179_residues MGNRCALVTALTLLGGLVPGMALALTPERVEQWQEAVGALHDHAAEQGMEDWHPASELRGVGKSETAFREAAKTLEDPAS ALELYGYEGAAAWAEEGARIYRALIALEAGDPRELQAQLEGAIEQIEENPHLGDAAKGEIIADIKAQRERVTDFLASVPD ADREAVATRQERLMELLRP
Sequences:
>Translated_179_residues MGNRCALVTALTLLGGLVPGMALALTPERVEQWQEAVGALHDHAAEQGMEDWHPASELRGVGKSETAFREAAKTLEDPAS ALELYGYEGAAAWAEEGARIYRALIALEAGDPRELQAQLEGAIEQIEENPHLGDAAKGEIIADIKAQRERVTDFLASVPD ADREAVATRQERLMELLRP >Mature_178_residues GNRCALVTALTLLGGLVPGMALALTPERVEQWQEAVGALHDHAAEQGMEDWHPASELRGVGKSETAFREAAKTLEDPASA LELYGYEGAAAWAEEGARIYRALIALEAGDPRELQAQLEGAIEQIEENPHLGDAAKGEIIADIKAQRERVTDFLASVPDA DREAVATRQERLMELLRP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19393; Mature: 19262
Theoretical pI: Translated: 4.30; Mature: 4.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGNRCALVTALTLLGGLVPGMALALTPERVEQWQEAVGALHDHAAEQGMEDWHPASELRG CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCC VGKSETAFREAAKTLEDPASALELYGYEGAAAWAEEGARIYRALIALEAGDPRELQAQLE CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH GAIEQIEENPHLGDAAKGEIIADIKAQRERVTDFLASVPDADREAVATRQERLMELLRP HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure GNRCALVTALTLLGGLVPGMALALTPERVEQWQEAVGALHDHAAEQGMEDWHPASELRG CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCC VGKSETAFREAAKTLEDPASALELYGYEGAAAWAEEGARIYRALIALEAGDPRELQAQLE CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH GAIEQIEENPHLGDAAKGEIIADIKAQRERVTDFLASVPDADREAVATRQERLMELLRP HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA