| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998328
Identifier: 121998328
GI number: 121998328
Start: 1680008
End: 1681399
Strand: Reverse
Name: 121998328
Synonym: Hhal_1546
Alternate gene names: NA
Gene position: 1681399-1680008 (Counterclockwise)
Preceding gene: 121998329
Following gene: 121998325
Centisome position: 62.78
GC content: 64.8
Gene sequence:
>1392_bases ATGCACGAGGTGGGTATGACCCCGGCCAAGCCAATCGAATCCAGGAGGCGTCCGGCCAGCGGCCCCTCATCTCGTTCCCT TGCGCGGGCCGGTGCCAGCGCCGGAATCGCCTTTGCATTGATCCTGTTGTCCGGCTCAGTAGCAGCCGACTCCAACGTGG TTGGCGATGCTCTCCCAGCGGCAGGGCGGACCGTCGAGGTGGATCCCGGCAACTACCGGGAGGCTGTCCGCGGTCTGCGC CCGGGTGATCGGTTGGAGCTGGCTCCGGGGGTGTATCGAGGCGGCTTGGACCTACGCGGTATCCAGGGCACCGAAAAGCA GCCGATTGTCATCGCCGGGCCACGGGGCGAAGCGGGTTCCGCGACCTTTGTGGGGCAGGATGGTCGCAACACGGTGCGTT TTGAGGACTCGGCCCACATTGAGCTGCGACGCCTGGAGCTGGACGGGCGCAGCGCCAACGCCAATGGGATCGTGGCGGAG GCGGAGGGCACGTTCACGCACAACATCACGCTCGCCAACCTGCGCATCCGCAACTACGACATCAGCCAGGGCAGCACGGC TGTAACCACACGCTCCGCCGCCTGGGACTGGACCATCCGCGACAACGAGATCCGTGGTGTTGGCACCGGCTTGTACCTCG GGCAACCAGACGGTGAGGCGCCCTTTATTGGCGGAGTCATCGAGGGCAATCACATCGCGGAGACCCTCGGCTACAACGCC CAGATCAAGCACCAGAACGAGAGAGCGATGGTTGAAGGCATGCCGACCAATCGGCGGGACACCGTGATTCGGGACAACAC CTTCAGCAAGGCGGAGGGTGGCAATAGCGGTGATGGCGCCCGACCGAACCTGCTGGTGGGCCATTGGCCGGAGCGCGGTC CGGGCGCCAACGACCGCTACCTGATCTACGGCAACCTCTTCTACGAGAACCCGCACGAGCGATTGTTCCAGGGCGAGGGT CATGTCGCCCTCTATAACAATGCCTTCGTGAACCGCGATGGAGATGGGGTCGTCCTTGGGCCGCATAACGACGTGCCTAA GGAAATCCGGATCTTGCGCAATACGGTGGTCGCCCGCGGCTTCGGTATCCGCCTGCGGGGTGCGGATCGAGGCTACCAGC AGGTTGTCTCTGGCAACGCGGTCTTCGCCGACCCGCCGCTGGACCTCGAGGCCACCGAGGATGACGATAACTTCACCGCC GGATTCGCTGAGGCGCCCGATCGGTTACGCGCTCCGGATGCTGGTCTGGACGATCTGGATCTGAGGCCGCAGGGCGACGC CTTGCGCAAGGATCGCCCCTTGGCCTTGCCGGAGGATCCCCCCGGTCTAGGCCATGACCGGAATGGGCAACTGCGTACAG AGCCGTTCTGGGGCGCCTATCAGCCGGAGTAG
Upstream 100 bases:
>100_bases CGCAGCGGGCGCCGTGCCCCGATTGGGCAACCGTAGACCATCCGCCGGGGTTCAGTCGGCAATCCCGGGCGGTGAGGCAA GCGCATCACATCCAGCCGGA
Downstream 100 bases:
>100_bases TTGGGGGGTGGACCGTGATGGCCGGTGCTGTTCCCTTGGGGCGGCTCCAGCTGAAGAAGGGTGGGCGGTTGGAGAAGAGT AGCTCCAGTGGGCCGATTTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 463; Mature: 463
Protein sequence:
>463_residues MHEVGMTPAKPIESRRRPASGPSSRSLARAGASAGIAFALILLSGSVAADSNVVGDALPAAGRTVEVDPGNYREAVRGLR PGDRLELAPGVYRGGLDLRGIQGTEKQPIVIAGPRGEAGSATFVGQDGRNTVRFEDSAHIELRRLELDGRSANANGIVAE AEGTFTHNITLANLRIRNYDISQGSTAVTTRSAAWDWTIRDNEIRGVGTGLYLGQPDGEAPFIGGVIEGNHIAETLGYNA QIKHQNERAMVEGMPTNRRDTVIRDNTFSKAEGGNSGDGARPNLLVGHWPERGPGANDRYLIYGNLFYENPHERLFQGEG HVALYNNAFVNRDGDGVVLGPHNDVPKEIRILRNTVVARGFGIRLRGADRGYQQVVSGNAVFADPPLDLEATEDDDNFTA GFAEAPDRLRAPDAGLDDLDLRPQGDALRKDRPLALPEDPPGLGHDRNGQLRTEPFWGAYQPE
Sequences:
>Translated_463_residues MHEVGMTPAKPIESRRRPASGPSSRSLARAGASAGIAFALILLSGSVAADSNVVGDALPAAGRTVEVDPGNYREAVRGLR PGDRLELAPGVYRGGLDLRGIQGTEKQPIVIAGPRGEAGSATFVGQDGRNTVRFEDSAHIELRRLELDGRSANANGIVAE AEGTFTHNITLANLRIRNYDISQGSTAVTTRSAAWDWTIRDNEIRGVGTGLYLGQPDGEAPFIGGVIEGNHIAETLGYNA QIKHQNERAMVEGMPTNRRDTVIRDNTFSKAEGGNSGDGARPNLLVGHWPERGPGANDRYLIYGNLFYENPHERLFQGEG HVALYNNAFVNRDGDGVVLGPHNDVPKEIRILRNTVVARGFGIRLRGADRGYQQVVSGNAVFADPPLDLEATEDDDNFTA GFAEAPDRLRAPDAGLDDLDLRPQGDALRKDRPLALPEDPPGLGHDRNGQLRTEPFWGAYQPE >Mature_463_residues MHEVGMTPAKPIESRRRPASGPSSRSLARAGASAGIAFALILLSGSVAADSNVVGDALPAAGRTVEVDPGNYREAVRGLR PGDRLELAPGVYRGGLDLRGIQGTEKQPIVIAGPRGEAGSATFVGQDGRNTVRFEDSAHIELRRLELDGRSANANGIVAE AEGTFTHNITLANLRIRNYDISQGSTAVTTRSAAWDWTIRDNEIRGVGTGLYLGQPDGEAPFIGGVIEGNHIAETLGYNA QIKHQNERAMVEGMPTNRRDTVIRDNTFSKAEGGNSGDGARPNLLVGHWPERGPGANDRYLIYGNLFYENPHERLFQGEG HVALYNNAFVNRDGDGVVLGPHNDVPKEIRILRNTVVARGFGIRLRGADRGYQQVVSGNAVFADPPLDLEATEDDDNFTA GFAEAPDRLRAPDAGLDDLDLRPQGDALRKDRPLALPEDPPGLGHDRNGQLRTEPFWGAYQPE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49864; Mature: 49864
Theoretical pI: Translated: 5.24; Mature: 5.24
Prosite motif: PS00217 SUGAR_TRANSPORT_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHEVGMTPAKPIESRRRPASGPSSRSLARAGASAGIAFALILLSGSVAADSNVVGDALPA CCCCCCCCCCCHHHHCCCCCCCCHHHHHHCCCCHHHHHEEEHHCCCCCCCCCCCCCCCCC AGRTVEVDPGNYREAVRGLRPGDRLELAPGVYRGGLDLRGIQGTEKQPIVIAGPRGEAGS CCCEEEECCCCHHHHHHCCCCCCCEEECCCEEECCCEEECCCCCCCCCEEEECCCCCCCC ATFVGQDGRNTVRFEDSAHIELRRLELDGRSANANGIVAEAEGTFTHNITLANLRIRNYD EEEEECCCCCEEEECCCCCEEEEEEEECCCCCCCCEEEEECCCCEEEEEEEEEEEEEEEE ISQGSTAVTTRSAAWDWTIRDNEIRGVGTGLYLGQPDGEAPFIGGVIEGNHIAETLGYNA CCCCCEEEEECCCEEEEEEECCCEEEEECEEEEECCCCCCCEEEEEEECCHHHHHHCCCE QIKHQNERAMVEGMPTNRRDTVIRDNTFSKAEGGNSGDGARPNLLVGHWPERGPGANDRY EEEECCCCEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCE LIYGNLFYENPHERLFQGEGHVALYNNAFVNRDGDGVVLGPHNDVPKEIRILRNTVVARG EEEEEEEECCHHHHHHCCCCCEEEECCEEEECCCCEEEECCCCCCHHHHHHHHHHHHHCC FGIRLRGADRGYQQVVSGNAVFADPPLDLEATEDDDNFTAGFAEAPDRLRAPDAGLDDLD CEEEEECCCCCHHHHHCCCEEEECCCCCCEECCCCCCEEECHHCCCHHHCCCCCCCCCCC LRPQGDALRKDRPLALPEDPPGLGHDRNGQLRTEPFWGAYQPE CCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCC >Mature Secondary Structure MHEVGMTPAKPIESRRRPASGPSSRSLARAGASAGIAFALILLSGSVAADSNVVGDALPA CCCCCCCCCCCHHHHCCCCCCCCHHHHHHCCCCHHHHHEEEHHCCCCCCCCCCCCCCCCC AGRTVEVDPGNYREAVRGLRPGDRLELAPGVYRGGLDLRGIQGTEKQPIVIAGPRGEAGS CCCEEEECCCCHHHHHHCCCCCCCEEECCCEEECCCEEECCCCCCCCCEEEECCCCCCCC ATFVGQDGRNTVRFEDSAHIELRRLELDGRSANANGIVAEAEGTFTHNITLANLRIRNYD EEEEECCCCCEEEECCCCCEEEEEEEECCCCCCCCEEEEECCCCEEEEEEEEEEEEEEEE ISQGSTAVTTRSAAWDWTIRDNEIRGVGTGLYLGQPDGEAPFIGGVIEGNHIAETLGYNA CCCCCEEEEECCCEEEEEEECCCEEEEECEEEEECCCCCCCEEEEEEECCHHHHHHCCCE QIKHQNERAMVEGMPTNRRDTVIRDNTFSKAEGGNSGDGARPNLLVGHWPERGPGANDRY EEEECCCCEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCE LIYGNLFYENPHERLFQGEGHVALYNNAFVNRDGDGVVLGPHNDVPKEIRILRNTVVARG EEEEEEEECCHHHHHHCCCCCEEEECCEEEECCCCEEEECCCCCCHHHHHHHHHHHHHCC FGIRLRGADRGYQQVVSGNAVFADPPLDLEATEDDDNFTAGFAEAPDRLRAPDAGLDDLD CEEEEECCCCCHHHHHCCCEEEECCCCCCEECCCCCCEEECHHCCCHHHCCCCCCCCCCC LRPQGDALRKDRPLALPEDPPGLGHDRNGQLRTEPFWGAYQPE CCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA