| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998269
Identifier: 121998269
GI number: 121998269
Start: 1606473
End: 1607003
Strand: Reverse
Name: 121998269
Synonym: Hhal_1487
Alternate gene names: NA
Gene position: 1607003-1606473 (Counterclockwise)
Preceding gene: 121998270
Following gene: 121998268
Centisome position: 60.0
GC content: 67.8
Gene sequence:
>531_bases ATGCCAGTTCGACGCCGCTTCGATCCCATGACCCTCGTTTTCCTGCTCCTGGCACTGCTTGCCGGCACCGCCGTTTACGT CCTCCACGGGCCGGCGGTCTGGGCGGAGGCACTGGCTCGGGCCGCCGAGCTGATGCTTCAGGTAGCGCCGATCATCCTGG CGGCGGTGCTCATGTCCGGGTATGTTCAGACCCTGATTCCCCGCCACGCGATCGAGCGTTGGCTGGGCCGGCGCAGTGGT GCCCGGGGGCTGGTGCTGGCTACCGCTGCCGGTGCGCTCACCCCGGGGGGGCCGTTCGCCGCATTCCCGCTGGTTGTGGC GTTGTTGCGCACCGGGGCCGCCTTCGAGGTGTGCGTGGCCTACCTGACAGCCTGGTCGGTGCTTGGCCTCAATCGGGCGC TGGTCTGGGAAGTGCCGTTCTTCGGCCTGGACTTCGTGGCGCTGAAGATGCTGGTTTCCTTGCCGCTGCCCTTCCTCGCT GCCTTGCTGGTTCGTCCTCTGGCCCGTCGTCTGATGCCGACGCCATGCTGA
Upstream 100 bases:
>100_bases CCAAGACTGCGCCGCCCGATCCCTCCGCAGAGGGACCAGGTGGCGCACGGTTCGTTTGGCCCCTGCTCGGGTCCAGAAAG GGACGTTCCCCTGAGTCGCT
Downstream 100 bases:
>100_bases CTGCCTTTCTGATCATCCTGGCCCTGCTGGCGGCTTCCGTGCTGCTGGCCCACTTTCTGCCCCATGCAAGCCATCGTGCC GCGGTGCAGGAGGGGGGACG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 176; Mature: 175
Protein sequence:
>176_residues MPVRRRFDPMTLVFLLLALLAGTAVYVLHGPAVWAEALARAAELMLQVAPIILAAVLMSGYVQTLIPRHAIERWLGRRSG ARGLVLATAAGALTPGGPFAAFPLVVALLRTGAAFEVCVAYLTAWSVLGLNRALVWEVPFFGLDFVALKMLVSLPLPFLA ALLVRPLARRLMPTPC
Sequences:
>Translated_176_residues MPVRRRFDPMTLVFLLLALLAGTAVYVLHGPAVWAEALARAAELMLQVAPIILAAVLMSGYVQTLIPRHAIERWLGRRSG ARGLVLATAAGALTPGGPFAAFPLVVALLRTGAAFEVCVAYLTAWSVLGLNRALVWEVPFFGLDFVALKMLVSLPLPFLA ALLVRPLARRLMPTPC >Mature_175_residues PVRRRFDPMTLVFLLLALLAGTAVYVLHGPAVWAEALARAAELMLQVAPIILAAVLMSGYVQTLIPRHAIERWLGRRSGA RGLVLATAAGALTPGGPFAAFPLVVALLRTGAAFEVCVAYLTAWSVLGLNRALVWEVPFFGLDFVALKMLVSLPLPFLAA LLVRPLARRLMPTPC
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18923; Mature: 18792
Theoretical pI: Translated: 11.50; Mature: 11.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVRRRFDPMTLVFLLLALLAGTAVYVLHGPAVWAEALARAAELMLQVAPIILAAVLMSG CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YVQTLIPRHAIERWLGRRSGARGLVLATAAGALTPGGPFAAFPLVVALLRTGAAFEVCVA HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHH YLTAWSVLGLNRALVWEVPFFGLDFVALKMLVSLPLPFLAALLVRPLARRLMPTPC HHHHHHHHHCCHHHHEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure PVRRRFDPMTLVFLLLALLAGTAVYVLHGPAVWAEALARAAELMLQVAPIILAAVLMSG CCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YVQTLIPRHAIERWLGRRSGARGLVLATAAGALTPGGPFAAFPLVVALLRTGAAFEVCVA HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHH YLTAWSVLGLNRALVWEVPFFGLDFVALKMLVSLPLPFLAALLVRPLARRLMPTPC HHHHHHHHHCCHHHHEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA