| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998233
Identifier: 121998233
GI number: 121998233
Start: 1563625
End: 1564929
Strand: Reverse
Name: 121998233
Synonym: Hhal_1451
Alternate gene names: NA
Gene position: 1564929-1563625 (Counterclockwise)
Preceding gene: 121998235
Following gene: 121998232
Centisome position: 58.43
GC content: 70.19
Gene sequence:
>1305_bases ATGGCTGAGGGTCGCCCGAAATACTCGCCGGAACTTCGGCGCAAGCTGGTCGAACTGGTCGAGGCGGGACACACACCGCA GGAACTGGCGCGCACCTACGAGCCAGCGGCCAAGACGATCCGCCGCTGGTATCAGGAGGACCGACAAGAGGCCAGCGAGC GAGGCAGCGGAAGCGCCAGCACGGGCCGCGCCGGCAAGGCAGGGAAAAAGCGTGGAGGAGCCACAGGCGCCTCGGCGTCC TCGGGCCGTTCCGGGGAGCAGGGGGGCGCGGCGAAGACCCGGGGTAAGCCGGGGAGTAGCAAGGGGCGCCGGCTCGCGGG CAAGCGGGTCCTGGAGAGCCCGGCGCCGGAGGCCGATGCCGGAGGGGCGACAGCGGAGTCCATCGAGGCCGAACAACCTG AGGAGGCCCTCCCTTCGGTCACCGGCGAGGTGATCGTCGAACCCGAGCCCGAGGTCGTCGTCGATGAGCAGCGCGATCCC GCGGATGAAGCGGAGGGCGCAGCCGACGCGGAGATGGATCCGGAGGAGCTGCTCGAGATCGGCCTCGAGCGTGCCGACCG GGGAGACGCGGTGTACGACTCGGAGGGCCCCGAGGCGGCACTGCCGCTCTATCAGGAGGCGCTCGATCTCCTCGATGCGG CGATCAGTGCCGGGGTCGGAGGGGATGCTGCGCGGCGCGATTGGGGCATTACCCTGGAGCGCTTCGGTGATGCCATCTTC GAGGTCGACGGAGCGGGTGCCGCCCGGCCCTGCTACGAGGCGTGGTGCGATCTGGCCGAGGCCCTGGCCACCGAGCATGC CACGGCCCAGTCGCTGCGGGACTGGAGCGTGGCGCTCGGTCGGTACGGCCAGGTGGTGCTGGTCGAGAAAGGGCCCGAGG CGGCGCTACCCTACTATCAGCAGGTGGTTGAACTGCGTGAGGACATCGTCCGCGAGCGGCAGAGCGCGGACGCCTACCAG GACTGGGCGCTGGCCCTGGAGCGCTATGGCGCCGTGCAGGAGGCGGTGGAAGGGCTGGCCGAGACGGTTGAGACCTACCG CCATGCCCTCGAGGTCCGCGAGGCTCTCGCCGAGCAGCACGATACGCCGCAGGCCCGTCGGGCCCTAGGGGTGGCCCAGG AGCGCCTGGCGATGGCGGTACTTGCTGCCGACGGAGCCGAGGCCGCCCTGCCGTACTTCGAACAACTGGCGGAGCTCTTC ACCGAGCTGGCCGAGGAACTTGGTACCGAAGAGGCCGACGCCGAACGGCGGCAGGCCGATACGATGCTCGGCAAGGTGCA GATGGCGGCGCTGGACCTAGAGTGA
Upstream 100 bases:
>100_bases GCGTTATCATCTTAGGGTTCTTGACCCGTCCGGGAAAACGGGCTGGAGTAACCCCGTCGACGGACTCGCCGTATCCGCAT GATCCGGAGGAAAGCATTGC
Downstream 100 bases:
>100_bases TTCGGCCCGTGGCGGGTGACAGCCGAGCGGGTCCGGGAGCGCAGGAGGTGCGTTGGAGACGATAGAATCGATCGATTGCG ACCTGGTTGTCGTTGGCGGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 434; Mature: 433
Protein sequence:
>434_residues MAEGRPKYSPELRRKLVELVEAGHTPQELARTYEPAAKTIRRWYQEDRQEASERGSGSASTGRAGKAGKKRGGATGASAS SGRSGEQGGAAKTRGKPGSSKGRRLAGKRVLESPAPEADAGGATAESIEAEQPEEALPSVTGEVIVEPEPEVVVDEQRDP ADEAEGAADAEMDPEELLEIGLERADRGDAVYDSEGPEAALPLYQEALDLLDAAISAGVGGDAARRDWGITLERFGDAIF EVDGAGAARPCYEAWCDLAEALATEHATAQSLRDWSVALGRYGQVVLVEKGPEAALPYYQQVVELREDIVRERQSADAYQ DWALALERYGAVQEAVEGLAETVETYRHALEVREALAEQHDTPQARRALGVAQERLAMAVLAADGAEAALPYFEQLAELF TELAEELGTEEADAERRQADTMLGKVQMAALDLE
Sequences:
>Translated_434_residues MAEGRPKYSPELRRKLVELVEAGHTPQELARTYEPAAKTIRRWYQEDRQEASERGSGSASTGRAGKAGKKRGGATGASAS SGRSGEQGGAAKTRGKPGSSKGRRLAGKRVLESPAPEADAGGATAESIEAEQPEEALPSVTGEVIVEPEPEVVVDEQRDP ADEAEGAADAEMDPEELLEIGLERADRGDAVYDSEGPEAALPLYQEALDLLDAAISAGVGGDAARRDWGITLERFGDAIF EVDGAGAARPCYEAWCDLAEALATEHATAQSLRDWSVALGRYGQVVLVEKGPEAALPYYQQVVELREDIVRERQSADAYQ DWALALERYGAVQEAVEGLAETVETYRHALEVREALAEQHDTPQARRALGVAQERLAMAVLAADGAEAALPYFEQLAELF TELAEELGTEEADAERRQADTMLGKVQMAALDLE >Mature_433_residues AEGRPKYSPELRRKLVELVEAGHTPQELARTYEPAAKTIRRWYQEDRQEASERGSGSASTGRAGKAGKKRGGATGASASS GRSGEQGGAAKTRGKPGSSKGRRLAGKRVLESPAPEADAGGATAESIEAEQPEEALPSVTGEVIVEPEPEVVVDEQRDPA DEAEGAADAEMDPEELLEIGLERADRGDAVYDSEGPEAALPLYQEALDLLDAAISAGVGGDAARRDWGITLERFGDAIFE VDGAGAARPCYEAWCDLAEALATEHATAQSLRDWSVALGRYGQVVLVEKGPEAALPYYQQVVELREDIVRERQSADAYQD WALALERYGAVQEAVEGLAETVETYRHALEVREALAEQHDTPQARRALGVAQERLAMAVLAADGAEAALPYFEQLAELFT ELAEELGTEEADAERRQADTMLGKVQMAALDLE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46530; Mature: 46398
Theoretical pI: Translated: 4.20; Mature: 4.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEGRPKYSPELRRKLVELVEAGHTPQELARTYEPAAKTIRRWYQEDRQEASERGSGSAS CCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC TGRAGKAGKKRGGATGASASSGRSGEQGGAAKTRGKPGSSKGRRLAGKRVLESPAPEADA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC GGATAESIEAEQPEEALPSVTGEVIVEPEPEVVVDEQRDPADEAEGAADAEMDPEELLEI CCCCHHHCCCCCCHHHHHCCCCCEEECCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHH GLERADRGDAVYDSEGPEAALPLYQEALDLLDAAISAGVGGDAARRDWGITLERFGDAIF HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHCCHHE EVDGAGAARPCYEAWCDLAEALATEHATAQSLRDWSVALGRYGQVVLVEKGPEAALPYYQ EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH QVVELREDIVRERQSADAYQDWALALERYGAVQEAVEGLAETVETYRHALEVREALAEQH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC DTPQARRALGVAQERLAMAVLAADGAEAALPYFEQLAELFTELAEELGTEEADAERRQAD CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH TMLGKVQMAALDLE HHHHHHHHHHHCCC >Mature Secondary Structure AEGRPKYSPELRRKLVELVEAGHTPQELARTYEPAAKTIRRWYQEDRQEASERGSGSAS CCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC TGRAGKAGKKRGGATGASASSGRSGEQGGAAKTRGKPGSSKGRRLAGKRVLESPAPEADA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC GGATAESIEAEQPEEALPSVTGEVIVEPEPEVVVDEQRDPADEAEGAADAEMDPEELLEI CCCCHHHCCCCCCHHHHHCCCCCEEECCCCCEEECCCCCCCHHHCCCCCCCCCHHHHHHH GLERADRGDAVYDSEGPEAALPLYQEALDLLDAAISAGVGGDAARRDWGITLERFGDAIF HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHCCHHE EVDGAGAARPCYEAWCDLAEALATEHATAQSLRDWSVALGRYGQVVLVEKGPEAALPYYQ EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH QVVELREDIVRERQSADAYQDWALALERYGAVQEAVEGLAETVETYRHALEVREALAEQH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC DTPQARRALGVAQERLAMAVLAADGAEAALPYFEQLAELFTELAEELGTEEADAERRQAD CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH TMLGKVQMAALDLE HHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA